Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8P202T39 Lonicera japonica HOM05D000110 ORTHO05D000024 1.6e-61 239.2 115 100.0
Lj2P159T36 Lonicera japonica HOM05D000110 ORTHO05D000024 1.9e-22 109.4 124 59.7
CSS0045248 Camellia sinensis var. sinensis HOM05D000110 ORTHO05D000024 4.2e-22 108.2 139 52.5
Ciclev10021521m.g Citrus clementina HOM05D000110 ORTHO05D000024 1.6e-21 106.3 139 54.0
Thecc.03G224400 Theobroma cacao HOM05D000110 ORTHO05D000024 3.5e-21 105.1 109 63.3
CiPaw.11G114900 Carya illinoinensis HOM05D000110 ORTHO05D000024 4.6e-21 104.8 109 58.7
Lsat_1_v5_gn_3_12101 Lactuca sativa HOM05D000110 ORTHO05D000024 1.3e-20 103.2 143 49.0
Sabra01G0062600 Salix brachista HOM05D000110 ORTHO05D000024 1.8e-20 102.8 116 62.1
Duzib205G0691 Durio zibethinus HOM05D000110 ORTHO05D000024 3.9e-20 101.7 121 56.2
QL02p028847 Quercus lobata HOM05D000110 ORTHO05D000024 5.1e-20 101.3 115 56.5
Duzib068G0928 Durio zibethinus HOM05D000110 ORTHO05D000024 8.7e-20 100.5 109 59.6
Duzib084G0390 Durio zibethinus HOM05D000110 ORTHO05D000024 1.9e-19 99.4 109 59.6
Potri.001G086400 Populus trichocarpa HOM05D000110 ORTHO05D000024 4.3e-19 98.2 109 60.6
Haze_09136 Corylus avellana HOM05D000110 ORTHO05D000024 5.7e-19 97.8 110 58.2
Manes.02G005000 Manihot esculenta HOM05D000110 ORTHO05D000024 5.7e-19 97.8 108 63.0
Cfa011949 Carpinus fangiana HOM05D000110 ORTHO05D000024 1.6e-18 96.3 110 57.3
COL.COLO4_10766 Corchorus olitorius HOM05D000110 ORTHO05D000024 2.2e-18 95.9 109 63.3
Sabra03G0105100 Salix brachista HOM05D000110 ORTHO05D000024 2.2e-18 95.9 108 57.4
TAR375G0474 Trochodendron aralioides HOM05D000110 ORTHO05D000024 2.2e-18 95.9 110 60.0
TAR636G0241 Trochodendron aralioides HOM05D000110 ORTHO05D000024 2.2e-18 95.9 120 57.5
Potri.003G144500 Populus trichocarpa HOM05D000110 ORTHO05D000024 2.8e-18 95.5 108 58.3
CSS0039005 Camellia sinensis var. sinensis HOM05D000110 ORTHO05D000024 4.8e-18 94.7 123 52.0
Gohir.A12G238600 Gossypium hirsutum HOM05D000110 ORTHO05D000024 4.8e-18 94.7 110 57.3
Gohir.D12G239700 Gossypium hirsutum HOM05D000110 ORTHO05D000024 4.8e-18 94.7 110 57.3
Gorai.008G256800 Gossypium raimondii HOM05D000110 ORTHO05D000024 3.1e-17 92.0 108 57.4
Cpa.g.sc15.30 Carica papaya HOM05D000110 ORTHO05D000024 9.0e-17 90.5 109 56.0
CiPaw.12G079500 Carya illinoinensis HOM05D000110 ORTHO05D000024 9.0e-17 90.5 109 55.0
Lsat_1_v5_gn_6_82461 Lactuca sativa HOM05D000110 ORTHO05D000024 9.0e-17 90.5 114 48.2
Prupe.5G126800 Prunus persica HOM05D000110 ORTHO05D000024 9.0e-17 90.5 117 55.6
HanXRQChr06g0166661 Helianthus annuus HOM05D000110 ORTHO05D000024 1.2e-16 90.1 139 44.6
VMungo1309G1990 Vigna mungo HOM05D000110 ORTHO05D000024 1.2e-16 90.1 111 54.1
RcHm_v2.0_Chr1g0360381 Rosa chinensis HOM05D000110 ORTHO05D000024 1.5e-16 89.7 116 52.6
SalBow2G2659 Salvia bowleyana HOM05D000110 ORTHO05D000024 1.5e-16 89.7 111 52.3
Dinv29250 Davidia involucrata HOM05D000110 ORTHO05D000024 2.0e-16 89.4 125 50.4
ECA246G4921 Erigeron canadensis HOM05D000110 ORTHO05D000024 2.0e-16 89.4 121 47.9
MD07G1295200 Malus domestica HOM05D000110 ORTHO05D000024 2.0e-16 89.4 127 47.2
Gorai.003G076400 Gossypium raimondii HOM05D000110 ORTHO05D000024 2.6e-16 89.0 91 58.2
Nn1g00336 Nelumbo nucifera HOM05D000110 ORTHO05D000024 3.4e-16 88.6 136 47.1
Phvul.009G047500 Phaseolus vulgaris HOM05D000110 ORTHO05D000024 3.4e-16 88.6 111 53.2
Actinidia04161 Actinidia chinensis HOM05D000110 ORTHO05D000024 5.9e-16 87.8 131 51.1
CiPaw.06G044400 Carya illinoinensis HOM05D000110 ORTHO05D000024 5.9e-16 87.8 125 47.2
Haze_00247 Corylus avellana HOM05D000110 ORTHO05D000024 5.9e-16 87.8 118 47.5
Haze_00253 Corylus avellana HOM05D000110 ORTHO05D000024 5.9e-16 87.8 118 47.5
Gohir.A02G097100 Gossypium hirsutum HOM05D000110 ORTHO05D000024 5.9e-16 87.8 92 57.6
Gohir.D03G085800 Gossypium hirsutum HOM05D000110 ORTHO05D000024 7.7e-16 87.4 91 58.2
Oeu022049.1 Olea europaea HOM05D000110 ORTHO05D000024 7.7e-16 87.4 121 47.1
Atru.chr9.1917 Acer truncatum HOM05D000110 ORTHO05D000024 1.0e-15 87.0 138 50.0
Cc08_g16560 Coffea canephora HOM05D000110 ORTHO05D000024 1.0e-15 87.0 140 48.6
Glyma.20G216600 Glycine max HOM05D000110 ORTHO05D000024 1.3e-15 86.7 116 52.6
Lalb_Chr06g0168651 Lupinus albus HOM05D000110 ORTHO05D000024 1.3e-15 86.7 138 46.4
TAR629G3403 Trochodendron aralioides HOM05D000110 ORTHO05D000024 1.3e-15 86.7 128 49.2
Oeu022050.2 Olea europaea HOM05D000110 ORTHO05D000024 1.7e-15 86.3 121 47.9
Dinv09791 Davidia involucrata HOM05D000110 ORTHO05D000024 2.2e-15 85.9 127 47.2
TWI60G1582 Tripterygium wilfordii HOM05D000110 ORTHO05D000024 2.9e-15 85.5 127 48.8
Cfa016203 Carpinus fangiana HOM05D000110 ORTHO05D000024 3.8e-15 85.1 117 46.2
QL09p007759 Quercus lobata HOM05D000110 ORTHO05D000024 3.8e-15 85.1 111 52.3
Hma1.2p1_0440F.1_g153670 Hydrangea macrophylla HOM05D000110 ORTHO05D000024 5.0e-15 84.7 130 48.5
Oeu038532.1 Olea europaea HOM05D000110 ORTHO05D000024 5.0e-15 84.7 139 50.4
Aqoxy7G00044 Aquilegia oxysepala HOM05D000110 ORTHO05D000024 6.5e-15 84.3 114 50.9
Phvul.L006101 Phaseolus vulgaris HOM05D000110 ORTHO05D000024 1.4e-14 83.2 109 53.2
TWI15G0482 Tripterygium wilfordii HOM05D000110 ORTHO05D000024 1.9e-14 82.8 128 48.4
Nn3g18919 Nelumbo nucifera HOM05D000110 ORTHO05D000024 2.5e-14 82.4 110 52.7
Eucgr.D01698 Eucalyptus grandis HOM05D000110 ORTHO05D000024 3.2e-14 82.0 114 50.9
MBI04_g32677_MAGBIO Magnolia biondii HOM05D000110 ORTHO05D000024 3.2e-14 82.0 138 44.9
Prupe.2G314800 Prunus persica HOM05D000110 ORTHO05D000024 3.2e-14 82.0 124 49.2
FvH4_7g17000 Fragaria vesca HOM05D000110 ORTHO05D000024 4.2e-14 81.6 115 47.8
FAN01G0100 Fragaria x ananassa HOM05D000110 ORTHO05D000024 4.2e-14 81.6 115 47.8
FAN03G0550 Fragaria x ananassa HOM05D000110 ORTHO05D000024 4.2e-14 81.6 115 47.8
FAN06G4093 Fragaria x ananassa HOM05D000110 ORTHO05D000024 4.2e-14 81.6 115 47.8
FAN06G4576 Fragaria x ananassa HOM05D000110 ORTHO05D000024 4.2e-14 81.6 115 47.8
FAN10G3374 Fragaria x ananassa HOM05D000110 ORTHO05D000024 4.2e-14 81.6 115 47.8
FAN10G4276 Fragaria x ananassa HOM05D000110 ORTHO05D000024 4.2e-14 81.6 115 47.8
Dinv35358 Davidia involucrata HOM05D000110 ORTHO05D000024 5.5e-14 81.3 102 53.9
Glyma.10G173700 Glycine max HOM05D000110 ORTHO05D000024 5.5e-14 81.3 112 50.9
HanXRQChr13g0415521 Helianthus annuus HOM05D000110 ORTHO05D000024 5.5e-14 81.3 136 44.1
Hma1.2p1_0456F.1_g156460 Hydrangea macrophylla HOM05D000110 ORTHO05D000024 7.2e-14 80.9 113 51.3
Lj3g0007699 Lotus japonicus HOM05D000110 ORTHO05D000024 7.2e-14 80.9 114 46.5
Sc01g0010510 Simmondsia chinensis HOM05D000110 ORTHO05D000024 9.4e-14 80.5 130 48.5
Duzib205G0450 Durio zibethinus HOM05D000110 ORTHO05D000024 1.6e-13 79.7 120 45.0
Rhsim02G0249900 Rhododendron simsii HOM05D000110 ORTHO05D000024 1.6e-13 79.7 146 43.8
Gorai.006G206100 Gossypium raimondii HOM05D000110 ORTHO05D000024 2.7e-13 79.0 107 48.6
MD06G1114000 Malus domestica HOM05D000110 ORTHO05D000024 4.6e-13 78.2 119 50.4
HanXRQChr17g0534381 Helianthus annuus HOM05D000110 ORTHO05D000024 6.1e-13 77.8 108 46.3
Thecc.03G203000 Theobroma cacao HOM05D000110 ORTHO05D000024 6.1e-13 77.8 107 51.4
Manes.01G244000 Manihot esculenta HOM05D000110 ORTHO05D000024 7.9e-13 77.4 109 48.6
Gohir.A09G188900 Gossypium hirsutum HOM05D000110 ORTHO05D000024 1.0e-12 77.0 107 48.6
Gohir.D08G114000 Gossypium hirsutum HOM05D000110 ORTHO05D000024 1.0e-12 77.0 115 47.8
Gorai.004G122800 Gossypium raimondii HOM05D000110 ORTHO05D000024 1.0e-12 77.0 115 47.8
CSS0030557 Camellia sinensis var. sinensis HOM05D000110 ORTHO05D000024 1.4e-12 76.6 128 44.5
Lj1g0002512 Lotus japonicus HOM05D000110 ORTHO05D000024 1.8e-12 76.3 121 47.9
MD01G1224500 Malus domestica HOM05D000110 ORTHO05D000024 1.8e-12 76.3 125 44.8
MD14G1135300 Malus domestica HOM05D000110 ORTHO05D000024 1.8e-12 76.3 120 49.2
TPR.G15915 Trifolium pratense HOM05D000110 ORTHO05D000024 1.8e-12 76.3 129 42.6
Gohir.D09G183800 Gossypium hirsutum HOM05D000110 ORTHO05D000024 2.3e-12 75.9 107 48.6
HanXRQChr03g0083101 Helianthus annuus HOM05D000110 ORTHO05D000024 2.3e-12 75.9 132 42.4
Lj5g0006200 Lotus japonicus HOM05D000110 ORTHO05D000024 2.3e-12 75.9 122 44.3
Potri.002G174300 Populus trichocarpa HOM05D000110 ORTHO05D000024 2.3e-12 75.9 110 48.2
GSVIVG01038591001 Vitis vinifera HOM05D000110 ORTHO05D000024 2.3e-12 75.9 119 47.9
Glyma.04G233300 Glycine max HOM05D000110 ORTHO05D000024 3.0e-12 75.5 120 46.7
Gohir.A08G101900 Gossypium hirsutum HOM05D000110 ORTHO05D000024 3.0e-12 75.5 127 44.9
Potri.015G009300 Populus trichocarpa HOM05D000110 ORTHO05D000024 3.9e-12 75.1 116 44.8
Hma1.2p1_0415F.1_g147990 Hydrangea macrophylla HOM05D000110 ORTHO05D000024 6.7e-12 74.3 90 48.9
RcHm_v2.0_Chr7g0186471 Rosa chinensis HOM05D000110 ORTHO05D000024 8.8e-12 73.9 148 43.2
Ah.07g197780 Amaranthus hybridus HOM05D000110 ORTHO05D000024 1.1e-11 73.6 132 47.0
Medtr1g077600 Medicago truncatula HOM05D000110 ORTHO05D000024 1.1e-11 73.6 115 45.2
MBI12_g21750_MAGBIO Magnolia biondii HOM05D000110 ORTHO05D000024 1.5e-11 73.2 112 50.9
RcHm_v2.0_Chr1g0381791 Rosa chinensis HOM05D000110 ORTHO05D000024 1.5e-11 73.2 130 47.7
Sabra15G0007300 Salix brachista HOM05D000110 ORTHO05D000024 1.5e-11 73.2 114 42.1
VMungo0331G1490 Vigna mungo HOM05D000110 ORTHO05D000024 1.5e-11 73.2 114 40.4
EL10Ac5g12466 Beta vulgaris HOM05D000110 ORTHO05D000024 2.0e-11 72.8 128 46.9
Ca_23513_v3 Cicer arietinum L. HOM05D000110 ORTHO05D000024 2.0e-11 72.8 127 40.9
Ca_30405_v3 Cicer arietinum L. HOM05D000110 ORTHO05D000024 2.0e-11 72.8 127 40.9
Phvul.010G115600 Phaseolus vulgaris HOM05D000110 ORTHO05D000024 2.0e-11 72.8 113 40.7
COL.COLO4_16810 Corchorus olitorius HOM05D000110 ORTHO05D000024 2.5e-11 72.4 92 52.2
Glyma.03G258800 Glycine max HOM05D000110 ORTHO05D000024 2.5e-11 72.4 110 44.5
Ah.12g053010 Amaranthus hybridus HOM05D000110 ORTHO05D000024 3.3e-11 72.0 134 44.8
CSS0025258 Camellia sinensis var. sinensis HOM05D000110 ORTHO05D000024 3.3e-11 72.0 108 45.4
MSTRG.13726 Avicennia marina HOM05D000110 ORTHO05D000024 4.3e-11 71.6 134 44.0
FvH4_5g11410 Fragaria vesca HOM05D000110 ORTHO05D000024 4.3e-11 71.6 88 53.4
FAN08G1183 Fragaria x ananassa HOM05D000110 ORTHO05D000024 4.3e-11 71.6 114 44.7
FAN13G1155 Fragaria x ananassa HOM05D000110 ORTHO05D000024 4.3e-11 71.6 114 44.7
FAN18G0081 Fragaria x ananassa HOM05D000110 ORTHO05D000024 4.3e-11 71.6 114 44.7
Potri.014G100900 Populus trichocarpa HOM05D000110 ORTHO05D000024 5.7e-11 71.2 110 47.3
Duzib084G0832 Durio zibethinus HOM05D000110 ORTHO05D000024 9.7e-11 70.5 109 46.8
FvH4_7g32170 Fragaria vesca HOM05D000110 ORTHO05D000024 9.7e-11 70.5 130 46.9
FAN06G4965 Fragaria x ananassa HOM05D000110 ORTHO05D000024 9.7e-11 70.5 130 46.9
FAN10G1766 Fragaria x ananassa HOM05D000110 ORTHO05D000024 9.7e-11 70.5 130 46.9
FAN10G1787 Fragaria x ananassa HOM05D000110 ORTHO05D000024 9.7e-11 70.5 130 46.9
Thecc.01G339100 Theobroma cacao HOM05D000110 ORTHO05D000024 1.3e-10 70.1 120 40.8
Manes.05G192300 Manihot esculenta HOM05D000110 ORTHO05D000024 1.7e-10 69.7 109 47.7
FAN04G0978 Fragaria x ananassa HOM05D000110 ORTHO05D000024 2.2e-10 69.3 114 43.9
CAN.G481.45 Capsicum annuum HOM05D000110 ORTHO05D000024 2.8e-10 68.9 107 42.1
ECA240G2481 Erigeron canadensis HOM05D000110 ORTHO05D000024 2.8e-10 68.9 134 41.8
Lalb_Chr04g0254351 Lupinus albus HOM05D000110 ORTHO05D000024 3.7e-10 68.6 110 40.9
Sabra02G0139100 Salix brachista HOM05D000110 ORTHO05D000024 8.2e-10 67.4 108 45.4
VMungo0720G0484 Vigna mungo HOM05D000110 ORTHO05D000024 8.2e-10 67.4 109 49.5
CANSAT21G0082 Cannabis sativa HOM05D000110 ORTHO05D000024 1.1e-09 67.0 129 44.2
Hma1.2p1_2584F.1_g324876 Hydrangea macrophylla HOM05D000110 ORTHO05D000024 1.1e-09 67.0 105 42.9
Hma1.2p1_0101F.1_g049140 Hydrangea macrophylla HOM05D000110 ORTHO05D000024 1.4e-09 66.6 105 42.9
Oeu037045.1 Olea europaea HOM05D000110 ORTHO05D000024 1.4e-09 66.6 92 47.8
Oeu061005.1 Olea europaea HOM05D000110 ORTHO05D000024 1.4e-09 66.6 91 47.3
Phvul.001G062100 Phaseolus vulgaris HOM05D000110 ORTHO05D000024 1.4e-09 66.6 119 42.0
TPR.G8875 Trifolium pratense HOM05D000110 ORTHO05D000024 1.4e-09 66.6 119 41.2
CiPaw.01G078400 Carya illinoinensis HOM05D000110 ORTHO05D000024 1.8e-09 66.2 108 44.4
Potri.012G018700 Populus trichocarpa HOM05D000110 ORTHO05D000024 1.8e-09 66.2 93 49.5
Glyma.19G257500 Glycine max HOM05D000110 ORTHO05D000024 2.4e-09 65.9 113 40.7
SalBow7G0128 Salvia bowleyana HOM05D011574 ORTHO05D000024 2.4e-09 65.9 85 52.9
COL.COLO4_06238 Corchorus olitorius HOM05D000110 ORTHO05D000024 3.1e-09 65.5 111 38.7
Phvul.006G114900 Phaseolus vulgaris HOM05D000110 ORTHO05D000024 3.1e-09 65.5 99 40.4
TWI14G0951 Tripterygium wilfordii HOM05D000110 ORTHO05D000024 4.1e-09 65.1 88 44.3
FAN03G0718 Fragaria x ananassa HOM05D000110 ORTHO05D000024 5.3e-09 64.7 130 44.6
PSO384G0787 Papaver somniferum HOM05D000110 ORTHO05D000024 5.3e-09 64.7 139 38.1
Hund14200 Selenicereus undatus HOM05D000110 ORTHO05D000024 5.3e-09 64.7 123 46.3
Glyma.16G022900 Glycine max HOM05D000110 ORTHO05D000024 6.9e-09 64.3 126 40.5
PSO135G0026 Papaver somniferum HOM05D000110 ORTHO05D000024 6.9e-09 64.3 139 38.1
Gorai.001G153300 Gossypium raimondii HOM05D000110 ORTHO05D000024 9.1e-09 63.9 118 38.1
MD07G1153300 Malus domestica HOM05D000110 ORTHO05D000024 9.1e-09 63.9 120 40.0
Duzib133G1568 Durio zibethinus HOM05D000110 ORTHO05D000024 1.2e-08 63.5 110 39.1
Medtr8g027295 Medicago truncatula HOM05D000110 ORTHO05D000024 1.2e-08 63.5 129 38.8
Manes.01G036500 Manihot esculenta HOM05D000110 ORTHO05D000024 1.5e-08 63.2 111 44.1
Prupe.2G192300 Prunus persica HOM05D000110 ORTHO05D000024 1.5e-08 63.2 112 45.5
Sabra12G0014000 Salix brachista HOM05D000110 ORTHO05D000024 1.5e-08 63.2 84 46.4
Duzib138G1651 Durio zibethinus HOM05D000110 ORTHO05D000024 2.0e-08 62.8 114 37.7
vmacro10136 Vaccinium macrocarpon HOM05D000110 ORTHO05D000024 2.0e-08 62.8 94 41.5
Gohir.A07G136300 Gossypium hirsutum HOM05D000110 ORTHO05D000024 2.6e-08 62.4 117 35.0
Gohir.D07G141500 Gossypium hirsutum HOM05D000110 ORTHO05D000024 2.6e-08 62.4 118 37.3
MD01G1084700 Malus domestica HOM05D000110 ORTHO05D000024 2.6e-08 62.4 124 36.3
VMungo0540G2411 Vigna mungo HOM05D000110 ORTHO05D000024 2.6e-08 62.4 92 41.3
Dinv34226 Davidia involucrata HOM05D000110 ORTHO05D000024 5.9e-08 61.2 118 40.7
Glyma.07G053900 Glycine max HOM05D000110 ORTHO05D000024 7.7e-08 60.8 106 43.4
CDE04G0707 Ceratophyllum demersum HOM05D000110 ORTHO05D000024 1.0e-07 60.5 114 40.4
TWI23G1091 Tripterygium wilfordii HOM05D000110 ORTHO05D000024 1.0e-07 60.5 106 38.7
Actinidia18667 Actinidia chinensis HOM05D000110 ORTHO05D000024 1.3e-07 60.1 77 50.6
Nitab4.5_0000673g0090 Nicotiana tabacum HOM05D000110 ORTHO05D000024 1.3e-07 60.1 96 44.8
CDE12G0889 Ceratophyllum demersum HOM05D000110 ORTHO05D000024 1.7e-07 59.7 98 44.9
arahy.Tifrunner.gnm1.ann1.MKQQ3C Arachis hypogaea HOM05D000110 ORTHO05D000024 2.9e-07 58.9 131 40.5
SHI06934 Sapria himalayana HOM05D000110 ORTHO05D000024 3.8e-07 58.5 120 40.8
Migut.E00731 Erythranthe guttata HOM05D000110 ORTHO05D000024 8.5e-07 57.4 110 39.1
A01p15330 Brassica napus HOM05D000110 ORTHO05D000024 1.9e-06 56.2 80 43.8
C01p19280 Brassica napus HOM05D000110 ORTHO05D000024 1.9e-06 56.2 80 43.8
BolC1t01854H Brassica oleracea HOM05D000110 ORTHO05D000024 1.9e-06 56.2 80 43.8
BraA01t01477Z Brassica rapa HOM05D000110 ORTHO05D000024 1.9e-06 56.2 80 43.8
BcaNung01111 Brassica carinata HOM05D000110 ORTHO05D000024 2.5e-06 55.8 80 42.5
PGR031G3891 Punica granatum HOM05D000110 ORTHO05D000024 7.2e-06 54.3 109 39.4
PGSC0003DMG400000120 Solanum tuberosum HOM05D000110 ORTHO05D000024 7.2e-06 54.3 116 38.8
GSVIVG01027184001 Vitis vinifera HOM05D000110 ORTHO05D000024 7.2e-06 54.3 100 39.0


User provided reference genes

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