Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8P136T22 Lonicera japonica HOM05D005849 ORTHO05D004704 6.3e-115 417.5 223 100.0
Dinv26604 Davidia involucrata HOM05D005849 ORTHO05D004704 2.4e-50 203.0 235 55.3
QL04p068477 Quercus lobata HOM05D005849 ORTHO05D004704 1.2e-44 184.1 234 56.4
Prupe.3G197400 Prunus persica HOM05D005849 ORTHO05D004704 7.6e-44 181.4 240 50.8
Duzib133G0645 Durio zibethinus HOM05D005849 ORTHO05D004704 1.6e-41 173.7 239 53.1
Duzib138G1177 Durio zibethinus HOM05D005849 ORTHO05D004704 1.1e-39 167.5 243 50.2
Sabra14G0127500 Salix brachista HOM05D005849 ORTHO05D004704 2.5e-39 166.4 230 50.0
Thecc.01G196200 Theobroma cacao HOM05D005849 ORTHO05D004704 1.4e-37 160.6 239 49.8
MD09G1126800 Malus domestica HOM05D005849 ORTHO05D004704 1.5e-36 157.1 231 47.6
Manes.13G061900 Manihot esculenta HOM05D005849 ORTHO05D004704 5.8e-36 155.2 245 47.8
COL.COLO4_19617 Corchorus olitorius HOM05D005849 ORTHO05D004704 7.6e-36 154.8 260 50.8
Potri.014G167700 Populus trichocarpa HOM05D005849 ORTHO05D004704 2.9e-35 152.9 256 46.1
RcHm_v2.0_Chr2g0155981 Rosa chinensis HOM05D005849 ORTHO05D004704 4.2e-34 149.1 237 47.3
TAR629G2911 Trochodendron aralioides HOM05D005849 ORTHO05D004704 3.0e-32 142.9 230 48.7
FvH4_6g40610 Fragaria vesca HOM05D005849 ORTHO05D004704 3.9e-32 142.5 237 46.4
FAN05G2424 Fragaria x ananassa HOM05D005849 ORTHO05D004704 3.9e-32 142.5 237 46.8
FAN14G3262 Fragaria x ananassa HOM05D005849 ORTHO05D004704 3.9e-32 142.5 237 46.4
Manes.12G064702 Manihot esculenta HOM05D005849 ORTHO05D004704 3.9e-32 142.5 233 47.6
Cfa014225 Carpinus fangiana HOM05D005849 ORTHO05D004704 5.1e-32 142.1 225 48.0
Dinv21298 Davidia involucrata HOM05D005849 ORTHO05D004704 5.1e-32 142.1 227 45.8
Gohir.A07G169800 Gossypium hirsutum HOM05D005849 ORTHO05D004704 6.6e-32 141.7 222 50.9
Gorai.001G191400 Gossypium raimondii HOM05D005849 ORTHO05D004704 1.1e-31 141.0 222 50.9
FAN09G2506 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.9e-31 140.2 237 45.6
Haze_12628 Corylus avellana HOM05D005849 ORTHO05D004704 3.3e-31 139.4 225 47.6
FAN02G2959 Fragaria x ananassa HOM05D005849 ORTHO05D004704 3.3e-31 139.4 237 46.0
Gohir.D07G171100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.1e-30 136.7 223 50.2
CiPaw.04G197000 Carya illinoinensis HOM05D005849 ORTHO05D004704 2.8e-30 136.3 243 47.3
TAR629G2787 Trochodendron aralioides HOM05D005849 ORTHO05D004704 2.8e-30 136.3 140 62.9
CiPaw.03G281900 Carya illinoinensis HOM05D005849 ORTHO05D004704 3.6e-30 136.0 240 44.2
Nn1g03187 Nelumbo nucifera HOM05D005849 ORTHO05D004704 6.2e-30 135.2 236 45.3
Rhsim06G0176600 Rhododendron simsii HOM05D005849 ORTHO05D004704 1.8e-29 133.7 228 47.8
Gohir.A07G192100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 3.1e-29 132.9 223 47.5
Cc03_g07410 Coffea canephora HOM05D005849 ORTHO05D004704 6.9e-29 131.7 296 39.9
Nitab4.5_0000006g0660 Nicotiana tabacum HOM05D005849 ORTHO05D004704 1.2e-28 131.0 255 44.3
Cpa.g.sc136.30 Carica papaya HOM05D005849 ORTHO05D004704 2.0e-28 130.2 249 47.8
Gorai.001G222200 Gossypium raimondii HOM05D005849 ORTHO05D004704 3.4e-28 129.4 224 46.9
TWI36G1699 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 3.4e-28 129.4 251 42.2
Gohir.D07G198400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 4.5e-28 129.0 224 46.9
MD17G1117100 Malus domestica HOM05D005849 ORTHO05D004704 1.3e-27 127.5 185 47.0
Actinidia07866 Actinidia chinensis HOM05D005849 ORTHO05D004704 2.7e-25 119.8 208 45.7
EL10Ac9g22679 Beta vulgaris HOM05D005849 ORTHO05D004704 1.0e-24 117.9 264 40.5
Aqoxy4G02338 Aquilegia oxysepala HOM05D005849 ORTHO05D004704 1.3e-24 117.5 243 43.2
Sc20g0004000 Simmondsia chinensis HOM05D005849 ORTHO05D004704 2.3e-24 116.7 233 40.8
Oeu064351.1 Olea europaea HOM05D005849 ORTHO05D004704 3.0e-24 116.3 124 61.3
PGR083G2364 Punica granatum HOM05D005849 ORTHO05D004704 5.1e-24 115.5 237 42.6
Actinidia35203 Actinidia chinensis HOM05D005849 ORTHO05D004704 1.1e-23 114.4 225 40.9
TWI18G0644 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 2.5e-23 113.2 255 41.6
Glyma.13G006500 Glycine max HOM05D005849 ORTHO05D004704 4.3e-23 112.5 251 42.6
Sed0012118 Sechium edule HOM05D005849 ORTHO05D004704 4.3e-23 112.5 236 41.1
AUR62015005 Chenopodium quinoa HOM05D005849 ORTHO05D004704 5.6e-23 112.1 237 40.9
PSO541G2883 Papaver somniferum HOM05D005849 ORTHO05D004704 7.4e-23 111.7 254 38.6
Nn1g07503 Nelumbo nucifera HOM05D005849 ORTHO05D004704 1.3e-22 110.9 124 56.5
Duzib213G0789 Durio zibethinus HOM05D005849 ORTHO05D004704 2.1e-22 110.2 226 44.2
Psat5g104280 Pisum sativum HOM05D005849 ORTHO05D004704 2.1e-22 110.2 222 39.2
DCAR_019680 Daucus carota HOM05D005849 ORTHO05D004704 6.2e-22 108.6 233 46.4
PSO675G3647 Papaver somniferum HOM05D005849 ORTHO05D004704 6.2e-22 108.6 253 37.5
CsaV3_6G009640 Cucumis sativus L. HOM05D005849 ORTHO05D004704 3.1e-21 106.3 235 42.6
DCAR_012893 Daucus carota HOM05D005849 ORTHO05D004704 5.3e-21 105.5 147 53.7
Lj1P796T11 Lonicera japonica HOM05D005849 ORTHO05D004704 9.0e-21 104.8 129 58.9
Lsat_1_v5_gn_9_103781 Lactuca sativa HOM05D005849 ORTHO05D004704 1.5e-20 104.0 199 43.7
Ciclev10018021m.g Citrus clementina HOM05D005849 ORTHO05D004704 2.6e-20 103.2 209 45.5
CiPaw.11G203200 Carya illinoinensis HOM05D005849 ORTHO05D004704 3.4e-20 102.8 248 38.3
Medtr5g098480 Medicago truncatula HOM05D005849 ORTHO05D004704 4.5e-20 102.4 220 40.5
Solyc07g045450.1 Solanum lycopersicum HOM05D005849 ORTHO05D004704 4.5e-20 102.4 125 56.0
Sopen07g023990 Solanum pennellii HOM05D005849 ORTHO05D004704 4.5e-20 102.4 125 56.0
MBI19_g14891_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 5.8e-20 102.1 119 51.3
TPR.G35904 Trifolium pratense HOM05D005849 ORTHO05D004704 5.8e-20 102.1 220 43.2
Thecc.07G014700 Theobroma cacao HOM05D005849 ORTHO05D004704 1.7e-19 100.5 231 39.4
Ca_06483_v3 Cicer arietinum L. HOM05D005849 ORTHO05D004704 2.9e-19 99.8 197 45.2
LjContig00081g0015024 Lotus japonicus HOM05D005849 ORTHO05D004704 3.8e-19 99.4 242 38.4
Sed0027972 Sechium edule HOM05D005849 ORTHO05D004704 4.9e-19 99.0 220 40.0
Actinidia18832 Actinidia chinensis HOM05D005849 ORTHO05D004704 8.4e-19 98.2 117 54.7
Glyma.20G062100 Glycine max HOM05D005849 ORTHO05D004704 1.9e-18 97.1 262 37.0
MSTRG.12249 Avicennia marina HOM05D005849 ORTHO05D004704 3.2e-18 96.3 241 38.2
MELO3C025957.2 Cucumis melo HOM05D005849 ORTHO05D004704 3.2e-18 96.3 133 54.1
Medtr3g082780 Medicago truncatula HOM05D005849 ORTHO05D004704 3.2e-18 96.3 82 62.2
Nitab4.5_0004125g0020 Nicotiana tabacum HOM05D005849 ORTHO05D004704 4.2e-18 95.9 169 45.6
Nitab4.5_0001701g0180 Nicotiana tabacum HOM05D005849 ORTHO05D004704 1.2e-17 94.4 179 43.0
MBI16_g22138_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 1.6e-17 94.0 207 40.6
Peaxi162Scf00802g00130 Petunia axillaris HOM05D005849 ORTHO05D004704 3.5e-17 92.8 233 37.3
VMungo0540G2501 Vigna mungo HOM05D005849 ORTHO05D004704 4.6e-17 92.4 191 44.0
TPR.G11064 Trifolium pratense HOM05D005849 ORTHO05D004704 7.9e-17 91.7 232 37.5
Lalb_Chr10g0107651 Lupinus albus HOM05D005849 ORTHO05D004704 1.0e-16 91.3 229 41.5
AUR62029117 Chenopodium quinoa HOM05D005849 ORTHO05D004704 2.3e-16 90.1 205 41.0
Phvul.007G121090 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 2.3e-16 90.1 245 38.4
Gohir.A01G091100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 5.1e-16 89.0 224 39.3
Ah.01g002540 Amaranthus hybridus HOM05D005849 ORTHO05D004704 1.5e-15 87.4 235 37.4
Ciclev10009298m.g Citrus clementina HOM05D005849 ORTHO05D004704 1.5e-15 87.4 234 37.6
Gorai.002G099600 Gossypium raimondii HOM05D005849 ORTHO05D004704 4.3e-15 85.9 225 38.7
Sabra16G0240400 Salix brachista HOM05D005849 ORTHO05D004704 1.3e-14 84.3 227 38.3
Psat2g002880 Pisum sativum HOM05D005849 ORTHO05D004704 2.1e-14 83.6 221 39.4
Potri.001G367100 Populus trichocarpa HOM05D005849 ORTHO05D004704 1.1e-13 81.3 233 37.8
TWI38G0138 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 1.4e-13 80.9 216 36.6
Prupe.4G242400 Prunus persica HOM05D005849 ORTHO05D004704 2.4e-13 80.1 169 41.4
ECA240G3450 Erigeron canadensis HOM05D005849 ORTHO05D004704 5.3e-13 79.0 123 47.2
AT2G04480 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 2.6e-12 76.6 223 32.7
Gohir.D01G076400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.6e-12 76.6 166 40.4
THA.LOC104808845 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 2.6e-12 76.6 204 34.8
Lj6g0007370 Lotus japonicus HOM05D005849 ORTHO05D004704 3.4e-12 76.3 76 56.6
VMungo0540G1302 Vigna mungo HOM05D005849 ORTHO05D004704 4.5e-12 75.9 88 52.3
ClCG02G009210 Citrullus lanatus HOM05D005849 ORTHO05D004704 1.0e-11 74.7 128 47.7
AL3G42130 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 1.3e-11 74.3 224 32.1
CANSAT11G2057 Cannabis sativa HOM05D005849 ORTHO05D004704 2.9e-11 73.2 239 36.0
Manes.03G140566 Manihot esculenta HOM05D005849 ORTHO05D004704 2.9e-11 73.2 230 33.9
Manes.03G140700 Manihot esculenta HOM05D005849 ORTHO05D004704 3.8e-11 72.8 228 33.8
Manes.15G060700 Manihot esculenta HOM05D005849 ORTHO05D004704 3.8e-11 72.8 233 32.2
QL08p004345 Quercus lobata HOM05D005849 ORTHO05D004704 4.9e-11 72.4 226 36.3
QL11p054311 Quercus lobata HOM05D005849 ORTHO05D004704 4.9e-11 72.4 226 36.3
BcaC06g35871 Brassica carinata HOM05D009495 ORTHO05D004704 6.5e-11 72.0 82 53.7
BolC7t41473H Brassica oleracea HOM05D009495 ORTHO05D004704 6.5e-11 72.0 82 53.7
Glyma.08G329000 Glycine max HOM05D005849 ORTHO05D004704 6.5e-11 72.0 76 50.0
Phvul.006G056700 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 6.5e-11 72.0 97 47.4
Nn1g04368 Nelumbo nucifera HOM05D005849 ORTHO05D004704 1.1e-10 71.2 105 48.6
arahy.Tifrunner.gnm1.ann1.S46AGL Arachis hypogaea HOM05D005849 ORTHO05D004704 1.9e-10 70.5 245 34.7
BraA07t28463Z Brassica rapa HOM05D009495 ORTHO05D004704 1.9e-10 70.5 223 31.8
Thhalv10002998m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 1.9e-10 70.5 224 32.1
C07p10220 Brassica napus HOM05D009495 ORTHO05D004704 2.5e-10 70.1 224 32.1
THA.LOC104815364 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 2.5e-10 70.1 81 51.9
CiPaw.12G137700 Carya illinoinensis HOM05D005849 ORTHO05D004704 4.2e-10 69.3 232 36.2
Sp3g23270 Schrenkiella parvula HOM05D009495 ORTHO05D004704 5.5e-10 68.9 223 30.9
Dinv10326 Davidia involucrata HOM05D005849 ORTHO05D004704 9.3e-10 68.2 217 34.6
A07p06700 Brassica napus HOM05D009495 ORTHO05D004704 1.6e-09 67.4 223 30.5
Lj8P178T38 Lonicera japonica HOM05D005849 ORTHO05D004704 1.6e-09 67.4 105 53.3
arahy.Tifrunner.gnm1.ann1.8Y07GA Arachis hypogaea HOM05D005849 ORTHO05D004704 3.5e-09 66.2 233 35.2
C09p26070 Brassica napus HOM05D009495 ORTHO05D004704 3.5e-09 66.2 151 35.8
BolC9t55510H Brassica oleracea HOM05D009495 ORTHO05D004704 3.5e-09 66.2 151 35.8
AL7G44750 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 6.0e-09 65.5 223 30.9
CARHR102390 Cardamine hirsuta HOM05D009495 ORTHO05D004704 6.0e-09 65.5 223 30.9
Glyma.18G077800 Glycine max HOM05D014115 ORTHO05D004704 6.0e-09 65.5 73 53.4
AT5G35870 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 7.9e-09 65.1 210 32.4
ATR0827G126 Amborella trichopoda HOM05D005849 ORTHO05D004704 1.0e-08 64.7 78 51.3
Cpa.g.sc12.153 Carica papaya HOM05D005849 ORTHO05D004704 1.0e-08 64.7 258 36.4
Sp7g06260 Schrenkiella parvula HOM05D009495 ORTHO05D004704 1.0e-08 64.7 121 41.3
arahy.Tifrunner.gnm1.ann1.UTL0P7 Arachis hypogaea HOM05D005849 ORTHO05D004704 1.3e-08 64.3 74 47.3
Thhalv10005712m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 1.3e-08 64.3 210 31.9
CARHR216740 Cardamine hirsuta HOM05D009495 ORTHO05D004704 3.0e-08 63.2 215 30.7
BcaB06g26787 Brassica carinata HOM05D009495 ORTHO05D004704 3.9e-08 62.8 222 29.7
Os12g0498900 Oryza sativa ssp. japonica HOM05D005849 ORTHO05D004704 3.9e-08 62.8 140 35.7
Actinidia09789 Actinidia chinensis HOM05D005849 ORTHO05D004704 6.7e-08 62.0 129 45.7
Eucgr.H00876 Eucalyptus grandis HOM05D005849 ORTHO05D004704 8.7e-08 61.6 216 33.8
Medtr5g095710 Medicago truncatula HOM05D014115 ORTHO05D004704 1.1e-07 61.2 74 48.6
A09p20650 Brassica napus HOM05D009495 ORTHO05D004704 3.3e-07 59.7 143 37.8
BraA09t37669Z Brassica rapa HOM05D009495 ORTHO05D004704 3.3e-07 59.7 143 37.8
BcaB02g08048 Brassica carinata HOM05D009495 ORTHO05D004704 5.7e-07 58.9 211 32.7
Atru.chr2.3682 Acer truncatum HOM05D005849 ORTHO05D004704 9.6e-07 58.2 77 48.1
arahy.Tifrunner.gnm1.ann1.715EVP Arachis hypogaea HOM05D005849 ORTHO05D004704 9.6e-07 58.2 194 31.4
Carub.0007s3167 Capsella rubella HOM05D009495 ORTHO05D004704 9.6e-07 58.2 217 34.6
Aa31sc203G20 Aethionema arabicum HOM05D009495 ORTHO05D004704 1.3e-06 57.8 127 37.0
BcaC04g21895 Brassica carinata HOM05D009495 ORTHO05D004704 1.3e-06 57.8 194 34.5
A04p10030 Brassica napus HOM05D009495 ORTHO05D004704 1.6e-06 57.4 215 30.2
BraA04t16665Z Brassica rapa HOM05D009495 ORTHO05D004704 1.6e-06 57.4 215 30.2
COL.COLO4_09821 Corchorus olitorius HOM05D005849 ORTHO05D004704 1.6e-06 57.4 181 37.6
Carub.0003s2613 Capsella rubella HOM05D009495 ORTHO05D004704 3.7e-06 56.2 223 29.1
Psat5g169040 Pisum sativum HOM05D014115 ORTHO05D004704 3.7e-06 56.2 69 44.9
BcaC02g09504 Brassica carinata HOM05D009495 ORTHO05D004704 4.8e-06 55.8 88 43.2
Glyma.02G300100 Glycine max HOM05D014115 ORTHO05D004704 6.3e-06 55.5 238 29.4


User provided reference genes

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