Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 1.9e-26 121.7 61 100.0
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 2.2e-17 91.7 57 80.7
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 1.8e-16 88.6 54 77.8
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 5.9e-15 83.6 57 70.2
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 7.7e-15 83.2 55 78.2
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 7.7e-15 83.2 55 80.0
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 1.0e-14 82.8 54 75.9
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.3e-14 82.4 44 88.6
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.7e-14 82.0 49 79.6
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 1.7e-14 82.0 57 75.4
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 2.2e-14 81.6 57 73.7
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 2.9e-14 81.3 57 71.9
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 2.9e-14 81.3 44 86.4
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 2.9e-14 81.3 57 73.7
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 3.8e-14 80.9 44 84.1
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 3.8e-14 80.9 56 76.8
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 5.0e-14 80.5 44 81.8
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 5.0e-14 80.5 44 84.1
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 5.0e-14 80.5 44 84.1
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 5.0e-14 80.5 63 68.3
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 6.5e-14 80.1 57 71.9
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 6.5e-14 80.1 48 77.1
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 8.5e-14 79.7 44 84.1
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 8.5e-14 79.7 58 74.1
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.1e-13 79.3 45 82.2
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.1e-13 79.3 45 82.2
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.1e-13 79.3 44 84.1
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 1.4e-13 79.0 55 69.1
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.9e-13 78.6 54 72.2
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.9e-13 78.6 45 80.0
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.9e-13 78.6 44 81.8
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 1.9e-13 78.6 44 79.5
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.5e-13 78.2 44 81.8
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 2.5e-13 78.2 44 81.8
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.2e-13 77.8 49 73.5
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.2e-13 77.8 44 81.8
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 4.2e-13 77.4 54 70.4
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 5.5e-13 77.0 49 75.5
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 5.5e-13 77.0 49 75.5
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 5.5e-13 77.0 51 72.5
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 5.5e-13 77.0 44 81.8
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 5.5e-13 77.0 54 70.4
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 5.5e-13 77.0 51 72.5
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 7.2e-13 76.6 44 81.8
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 9.4e-13 76.3 49 77.6
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 3.6e-12 74.3 49 73.5
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 4.6e-12 73.9 49 69.4
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 4.6e-12 73.9 44 79.5
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 4.6e-12 73.9 54 68.5
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 4.6e-12 73.9 44 79.5
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 7.9e-12 73.2 57 61.4
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 7.9e-12 73.2 52 65.4
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 7.9e-12 73.2 54 66.7
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.0e-11 72.8 45 75.6
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 1.0e-11 72.8 49 69.4
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 1.0e-11 72.8 49 67.3
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 1.4e-11 72.4 56 66.1
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 1.4e-11 72.4 51 68.6
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.8e-11 72.0 52 63.5
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.8e-11 72.0 50 70.0
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 2.3e-11 71.6 57 66.7
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 3.0e-11 71.2 49 67.3
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 3.0e-11 71.2 45 73.3
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 3.0e-11 71.2 45 73.3
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 3.0e-11 71.2 49 67.3
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.9e-11 70.9 44 77.3
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 3.9e-11 70.9 50 70.0
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 3.9e-11 70.9 44 75.0
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 3.9e-11 70.9 58 62.1
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.1e-11 70.5 44 77.3
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 5.1e-11 70.5 49 69.4
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 5.1e-11 70.5 44 77.3
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 5.1e-11 70.5 49 67.3
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.7e-11 70.1 44 77.3
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 6.7e-11 70.1 58 62.1
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.5e-10 68.9 44 77.3
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 2.0e-10 68.6 52 65.4
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 2.0e-10 68.6 52 65.4
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 2.6e-10 68.2 49 67.3
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 2.6e-10 68.2 54 63.0
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 2.6e-10 68.2 49 69.4
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 2.6e-10 68.2 44 72.7
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.3e-10 67.8 49 69.4
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 3.3e-10 67.8 49 65.3
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 5.7e-10 67.0 44 77.3
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 5.7e-10 67.0 58 58.6
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 5.7e-10 67.0 49 67.3
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 5.7e-10 67.0 49 67.3
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 5.7e-10 67.0 48 64.6
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 7.4e-10 66.6 49 71.4
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 7.4e-10 66.6 49 67.3
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 7.4e-10 66.6 49 67.3
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 7.4e-10 66.6 54 59.3
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 7.4e-10 66.6 47 68.1
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 7.4e-10 66.6 52 61.5
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 7.4e-10 66.6 44 72.7
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 9.7e-10 66.2 55 65.5
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 1.3e-09 65.9 44 72.7
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 2.2e-09 65.1 50 66.0
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.8e-09 64.7 40 77.5
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 3.7e-09 64.3 44 68.2
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 4.8e-09 63.9 55 58.2
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 4.8e-09 63.9 44 68.2
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 6.3e-09 63.5 53 58.5
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 8.2e-09 63.2 44 68.2
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 1.4e-08 62.4 44 68.2
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.4e-08 62.4 35 77.1
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.8e-08 62.0 44 65.9
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 1.8e-08 62.0 44 68.2
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 1.8e-08 62.0 47 59.6
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 2.4e-08 61.6 51 58.8
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 3.1e-08 61.2 54 57.4
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 4.1e-08 60.8 49 61.2
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 5.9e-07 57.0 48 58.3
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.0e-06 56.2 51 58.8
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 2.2e-06 55.1 50 58.0
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 2.9e-06 54.7 45 57.8
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 3.8e-06 54.3 34 76.5


User provided reference genes

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