Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 1.6e-73 279.3 133 100.0
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 1.2e-57 226.5 132 80.3
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 3.0e-56 221.9 133 75.2
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 3.0e-56 221.9 133 75.2
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 3.9e-56 221.5 133 75.2
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 1.1e-55 219.9 133 75.2
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 1.5e-55 219.5 133 75.2
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.5e-55 219.5 134 74.6
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 3.3e-55 218.4 133 75.2
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 4.3e-55 218.0 122 82.8
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 4.3e-55 218.0 133 72.9
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 4.8e-54 214.5 133 71.4
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 4.8e-54 214.5 133 73.7
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 8.2e-54 213.8 133 70.7
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 2.4e-53 212.2 133 75.2
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 3.1e-53 211.8 132 76.5
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 3.1e-53 211.8 131 74.8
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 4.1e-53 211.5 133 75.9
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 6.9e-53 210.7 133 71.4
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 6.9e-53 210.7 133 70.7
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 1.2e-52 209.9 133 71.4
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 2.0e-52 209.1 133 74.4
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 2.0e-52 209.1 133 72.9
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 3.4e-52 208.4 133 69.9
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 4.5e-52 208.0 133 69.9
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 5.9e-52 207.6 133 75.9
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 7.7e-52 207.2 133 73.7
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 1.0e-51 206.8 133 71.4
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.3e-51 206.5 133 73.7
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 1.7e-51 206.1 133 74.4
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.2e-51 205.7 133 71.4
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.2e-51 205.7 133 73.7
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 2.9e-51 205.3 134 72.4
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 6.5e-51 204.1 130 70.8
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 6.5e-51 204.1 133 70.7
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 6.5e-51 204.1 137 73.7
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 6.5e-51 204.1 133 70.7
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 1.1e-50 203.4 133 72.9
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 2.5e-50 202.2 133 72.2
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 2.5e-50 202.2 133 72.9
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 2.5e-50 202.2 133 70.7
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 5.5e-50 201.1 133 69.9
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 7.2e-50 200.7 133 69.2
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 9.4e-50 200.3 135 73.3
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 1.2e-49 199.9 135 71.9
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.2e-49 199.9 133 69.9
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 1.6e-49 199.5 134 72.4
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.6e-49 199.5 136 69.9
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 2.1e-49 199.1 133 64.7
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 2.7e-49 198.7 134 69.4
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 3.6e-49 198.4 135 69.6
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 6.1e-49 197.6 132 65.9
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 7.9e-49 197.2 135 71.9
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.0e-48 196.8 113 77.9
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.0e-48 196.8 134 70.1
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 1.4e-48 196.4 133 68.4
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 1.8e-48 196.1 133 68.4
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 2.3e-48 195.7 133 68.4
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 3.0e-48 195.3 135 68.1
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.0e-48 195.3 135 68.1
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.0e-48 195.3 135 68.1
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 6.7e-48 194.1 128 71.1
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 6.7e-48 194.1 133 67.7
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 8.8e-48 193.7 132 68.2
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 8.8e-48 193.7 132 68.2
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 8.8e-48 193.7 135 70.4
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.1e-47 193.4 133 66.2
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 1.5e-47 193.0 133 68.4
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 1.5e-47 193.0 133 68.4
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 2.6e-47 192.2 133 68.4
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 2.6e-47 192.2 133 67.7
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 5.7e-47 191.0 131 66.4
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 7.4e-47 190.7 135 66.7
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 2.2e-46 189.1 134 66.4
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 3.7e-46 188.3 133 65.4
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 3.7e-46 188.3 133 65.4
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.1e-45 186.8 127 68.5
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 1.4e-45 186.4 130 64.6
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.8e-45 186.0 118 72.9
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 7.0e-45 184.1 134 66.4
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 7.0e-45 184.1 129 63.6
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 9.1e-45 183.7 130 65.4
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 1.5e-44 183.0 112 75.9
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 2.0e-44 182.6 134 61.9
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 4.5e-44 181.4 143 57.3
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 5.9e-44 181.0 134 64.9
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 1.7e-43 179.5 145 57.9
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 2.2e-43 179.1 134 60.4
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 2.2e-43 179.1 130 65.4
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 2.9e-43 178.7 128 64.1
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.0e-43 177.9 133 63.9
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.4e-42 176.4 112 73.2
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 4.2e-42 174.9 132 57.6
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 9.4e-42 173.7 112 71.4
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.6e-41 172.9 131 60.3
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 8.0e-41 170.6 130 58.5
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 8.0e-41 170.6 130 61.5
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.4e-40 169.9 128 60.9
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 2.3e-40 169.1 134 57.5
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 3.0e-40 168.7 136 59.6
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 3.9e-40 168.3 128 61.7
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 3.9e-40 168.3 145 57.9
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 2.6e-39 165.6 134 60.4
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 7.4e-39 164.1 114 64.9
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 1.7e-38 162.9 128 57.8
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 2.2e-38 162.5 136 54.4
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 4.8e-38 161.4 112 70.5
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.1e-37 160.2 114 67.5
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 4.5e-36 154.8 133 57.1
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 4.5e-36 154.8 113 66.4
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 1.7e-35 152.9 136 52.9
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 2.2e-35 152.5 113 62.8
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.2e-35 152.5 109 65.1
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 8.5e-35 150.6 127 58.3
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 1.9e-34 149.4 112 58.0
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 4.2e-34 148.3 98 71.4
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.1e-33 144.4 122 56.6
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.0e-33 144.1 122 56.6
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.0e-32 143.7 122 56.6
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.3e-32 142.5 143 52.4
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.3e-32 142.5 122 56.6
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.0e-32 142.1 122 56.6
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.2e-31 140.2 122 55.7
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-28 129.0 116 53.4
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.5e-28 128.6 87 67.8
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 3.2e-26 122.1 133 47.4
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 8.8e-24 114.0 74 64.9
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.7e-22 109.8 73 65.8
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 2.4e-21 105.9 134 42.5
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.4e-21 105.9 122 45.9
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 9.1e-21 104.0 117 47.9
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 1.0e-19 100.5 135 40.0
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 2.4e-13 79.3 136 33.8
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 1.6e-12 76.6 42 76.2
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 9.5e-10 67.4 102 40.2
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.4e-07 58.9 85 37.6


User provided reference genes

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