Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 7.1e-18 92.8 45 100.0
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 2.5e-15 84.3 45 88.9
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 3.3e-15 84.0 42 92.9
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 5.7e-15 83.2 44 86.4
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 5.7e-15 83.2 43 90.7
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 9.6e-15 82.4 44 86.4
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 9.6e-15 82.4 42 90.5
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 9.6e-15 82.4 43 88.4
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 1.3e-14 82.0 43 90.7
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 1.6e-14 81.6 43 88.4
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 1.6e-14 81.6 42 90.5
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 2.1e-14 81.3 43 86.0
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.1e-14 81.3 43 88.4
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.1e-14 81.3 43 88.4
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.8e-14 80.9 42 88.1
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 2.8e-14 80.9 43 86.0
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 2.8e-14 80.9 43 88.4
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 3.7e-14 80.5 42 88.1
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 3.7e-14 80.5 45 84.4
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 3.7e-14 80.5 45 84.4
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 3.7e-14 80.5 40 92.5
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 3.7e-14 80.5 43 88.4
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 3.7e-14 80.5 43 86.0
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 4.8e-14 80.1 42 88.1
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 4.8e-14 80.1 43 86.0
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 4.8e-14 80.1 43 88.4
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 4.8e-14 80.1 43 83.7
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 6.2e-14 79.7 40 92.5
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 6.2e-14 79.7 43 83.7
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 8.2e-14 79.3 45 82.2
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 8.2e-14 79.3 42 85.7
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 8.2e-14 79.3 39 92.3
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 8.2e-14 79.3 43 86.0
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 8.2e-14 79.3 43 88.4
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 8.2e-14 79.3 43 83.7
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 8.2e-14 79.3 43 88.4
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 1.1e-13 79.0 43 86.0
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 1.1e-13 79.0 43 83.7
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 1.4e-13 78.6 43 83.7
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.4e-13 78.6 41 85.4
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 1.4e-13 78.6 43 83.7
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 1.4e-13 78.6 43 83.7
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 1.4e-13 78.6 42 83.3
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 1.8e-13 78.2 45 82.2
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 1.8e-13 78.2 45 82.2
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 1.8e-13 78.2 45 82.2
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 1.8e-13 78.2 43 86.0
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 1.8e-13 78.2 43 83.7
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 1.8e-13 78.2 40 90.0
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 1.8e-13 78.2 40 90.0
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 1.8e-13 78.2 38 94.7
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 1.8e-13 78.2 43 83.7
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 2.4e-13 77.8 42 85.7
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 2.4e-13 77.8 40 90.0
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 2.4e-13 77.8 43 83.7
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 2.4e-13 77.8 43 83.7
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 2.4e-13 77.8 43 83.7
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 2.4e-13 77.8 40 90.0
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 2.4e-13 77.8 42 83.3
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 2.4e-13 77.8 40 90.0
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 3.1e-13 77.4 43 83.7
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 3.1e-13 77.4 43 83.7
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 3.1e-13 77.4 42 85.7
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 3.1e-13 77.4 43 83.7
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.1e-13 77.4 43 83.7
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.1e-13 77.4 43 83.7
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.1e-13 77.4 43 83.7
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.1e-13 77.4 43 83.7
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 3.1e-13 77.4 40 87.5
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 3.1e-13 77.4 43 81.4
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 3.1e-13 77.4 43 83.7
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 3.1e-13 77.4 39 89.7
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 4.1e-13 77.0 45 80.0
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 4.1e-13 77.0 45 80.0
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 4.1e-13 77.0 45 80.0
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 4.1e-13 77.0 45 80.0
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 4.1e-13 77.0 45 80.0
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 4.1e-13 77.0 45 80.0
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 4.1e-13 77.0 45 80.0
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 4.1e-13 77.0 42 81.0
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 4.1e-13 77.0 40 90.0
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 5.3e-13 76.6 42 81.0
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 5.3e-13 76.6 41 85.4
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 5.3e-13 76.6 43 83.7
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 5.3e-13 76.6 40 87.5
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 5.3e-13 76.6 40 87.5
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 5.3e-13 76.6 42 81.0
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 6.9e-13 76.3 43 79.1
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 6.9e-13 76.3 38 92.1
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 6.9e-13 76.3 38 92.1
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 6.9e-13 76.3 42 81.0
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 6.9e-13 76.3 43 81.4
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 6.9e-13 76.3 40 87.5
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 6.9e-13 76.3 40 87.5
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 9.0e-13 75.9 40 87.5
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 9.0e-13 75.9 43 81.4
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 9.0e-13 75.9 40 87.5
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 9.0e-13 75.9 42 81.0
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 1.2e-12 75.5 44 79.5
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 1.5e-12 75.1 38 92.1
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 1.5e-12 75.1 38 92.1
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 1.5e-12 75.1 40 87.5
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.5e-12 75.1 40 87.5
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 2.0e-12 74.7 44 79.5
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 2.6e-12 74.3 40 85.0
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 2.6e-12 74.3 44 75.0
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 3.4e-12 73.9 42 78.6
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 4.5e-12 73.6 40 85.0
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 4.5e-12 73.6 43 79.1
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 4.5e-12 73.6 42 83.3
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.0e-11 72.4 43 74.4
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.0e-11 72.4 40 82.5
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.3e-11 72.0 41 80.5
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.2e-11 71.2 38 81.6
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 2.2e-11 71.2 38 84.2
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 2.9e-11 70.9 37 86.5
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 2.9e-11 70.9 37 86.5
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 6.5e-11 69.7 38 84.2
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 1.4e-10 68.6 37 81.1
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 1.9e-10 68.2 39 79.5
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 7.1e-10 66.2 34 88.2
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 1.6e-09 65.1 38 76.3
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 2.1e-09 64.7 43 74.4
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 3.5e-09 63.9 38 76.3
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 3.5e-09 63.9 32 90.6
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 7.9e-09 62.8 38 73.7
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 7.9e-09 62.8 39 79.5
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 1.8e-08 61.6 36 77.8
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 3.0e-08 60.8 38 71.1
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 3.9e-08 60.5 38 71.1
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 5.1e-08 60.1 38 71.1
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 6.7e-08 59.7 36 75.0
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 8.7e-08 59.3 35 74.3
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 2.5e-07 57.8 35 71.4
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 5.7e-07 56.6 26 92.3
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 5.7e-07 56.6 36 75.0
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 7.4e-07 56.2 28 85.7
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.3e-06 55.5 37 70.3
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.3e-06 55.5 38 65.8
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.3e-06 55.5 38 65.8
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.3e-06 55.5 38 65.8
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.3e-06 55.5 38 65.8
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.3e-06 55.5 38 65.8
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 2.2e-06 54.7 41 61.0
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 2.8e-06 54.3 35 68.6
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 3.7e-06 53.9 36 66.7


User provided reference genes

Program Settings