Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 4.3e-104 382.1 328 100.0
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.0e-33 148.3 178 69.1
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 2.6e-24 117.1 68 77.9
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 3.5e-21 106.7 69 73.9
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 6.6e-20 102.4 68 72.1
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.9e-19 100.9 130 44.6
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 7.3e-19 99.0 55 83.6
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 1.2e-18 98.2 55 83.6
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 2.1e-18 97.4 55 81.8
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 6.1e-18 95.9 55 81.8
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 1.4e-17 94.7 55 80.0
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 5.2e-17 92.8 55 80.0
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 6.8e-17 92.4 55 78.2
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 1.2e-16 91.7 55 78.2
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.5e-16 91.3 55 76.4
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 2.0e-16 90.9 55 78.2
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 3.4e-16 90.1 55 78.2
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 3.4e-16 90.1 54 75.9
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 7.5e-16 89.0 54 75.9
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 7.5e-16 89.0 54 74.1
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.5e-16 89.0 54 74.1
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.5e-16 89.0 54 74.1
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.5e-16 89.0 54 74.1
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 7.5e-16 89.0 55 74.5
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.9e-15 87.0 54 72.2
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 4.1e-14 83.2 55 70.9
PGR044G0901 Punica granatum HOM05D004463 ORTHO05D004724 5.4e-14 82.8 55 70.9
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 9.2e-14 82.0 55 74.5
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 2.3e-12 77.4 57 64.9
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 5.0e-12 76.3 63 61.9
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 6.6e-12 75.9 42 76.2
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 6.6e-12 75.9 67 53.7
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 8.6e-12 75.5 62 64.5
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 8.6e-12 75.5 62 64.5
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 1.1e-11 75.1 65 60.0
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 2.1e-10 70.9 59 57.6
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 3.6e-10 70.1 59 55.9
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 4.7e-10 69.7 59 61.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 4.7e-10 69.7 59 61.0
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 1.4e-09 68.2 57 61.4
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 5.2e-09 66.2 59 61.0
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 6.8e-09 65.9 56 62.5
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 6.8e-09 65.9 53 64.2
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 6.8e-09 65.9 43 72.1
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 8.9e-09 65.5 59 57.6
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.5e-08 64.7 72 54.2
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 2.0e-08 64.3 53 62.3
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 2.0e-08 64.3 53 62.3
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.0e-08 64.3 43 69.8
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 2.0e-08 64.3 59 57.6
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 2.0e-08 64.3 57 61.4
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 2.6e-08 63.9 44 68.2
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 3.4e-08 63.5 51 64.7
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 4.4e-08 63.2 43 69.8
EL10Ac7g16555 Beta vulgaris HOM05D031029 ORTHO05D004724 5.8e-08 62.8 45 60.0
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 5.8e-08 62.8 43 67.4
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 5.8e-08 62.8 43 67.4
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 5.8e-08 62.8 43 67.4
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 5.8e-08 62.8 51 64.7
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 5.8e-08 62.8 51 62.7
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 5.8e-08 62.8 51 62.7
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 5.8e-08 62.8 63 58.7
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 5.8e-08 62.8 43 67.4
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 7.5e-08 62.4 52 61.5
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 7.5e-08 62.4 51 60.8
Sc19g0006390 Simmondsia chinensis HOM05D004463 ORTHO05D004724 7.5e-08 62.4 34 76.5
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 7.5e-08 62.4 51 62.7
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 9.8e-08 62.0 53 62.3
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 9.8e-08 62.0 63 57.1
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 9.8e-08 62.0 59 55.9
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.3e-07 61.6 51 60.8
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.3e-07 61.6 51 60.8
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 1.3e-07 61.6 61 57.4
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 1.3e-07 61.6 61 57.4
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 1.3e-07 61.6 51 60.8
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 1.3e-07 61.6 51 60.8
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 1.3e-07 61.6 51 62.7
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 1.3e-07 61.6 51 60.8
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 1.3e-07 61.6 51 60.8
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.7e-07 61.2 56 58.9
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 1.7e-07 61.2 51 58.8
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.7e-07 61.2 52 59.6
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 1.7e-07 61.2 51 60.8
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.7e-07 61.2 55 60.0
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 2.2e-07 60.8 40 62.5
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 2.2e-07 60.8 57 57.9
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.2e-07 60.8 51 62.7
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 2.9e-07 60.5 51 58.8
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 2.9e-07 60.5 51 60.8
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 2.9e-07 60.5 48 68.8
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 2.9e-07 60.5 51 60.8
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 3.7e-07 60.1 51 60.8
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 3.7e-07 60.1 51 58.8
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 4.9e-07 59.7 60 55.0
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 4.9e-07 59.7 43 65.1
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 4.9e-07 59.7 65 52.3
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 4.9e-07 59.7 51 60.8
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 6.4e-07 59.3 44 63.6
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 6.4e-07 59.3 62 58.1
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 1.1e-06 58.5 61 55.7
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.1e-06 58.5 43 60.5
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 1.4e-06 58.2 51 60.8
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 1.4e-06 58.2 43 62.8
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.4e-06 58.2 41 61.0
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 1.9e-06 57.8 51 54.9
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 2.4e-06 57.4 54 57.4
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.4e-06 57.4 54 55.6
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.4e-06 57.4 54 57.4
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.4e-06 57.4 54 57.4
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.4e-06 57.4 54 57.4
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 3.2e-06 57.0 50 62.0
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 3.2e-06 57.0 44 61.4
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 3.2e-06 57.0 50 62.0
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 3.2e-06 57.0 61 55.7
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 4.1e-06 56.6 52 59.6
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 4.1e-06 56.6 51 60.8
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.1e-06 56.6 51 54.9
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.1e-06 56.6 51 54.9
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 4.1e-06 56.6 43 60.5
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 4.1e-06 56.6 51 58.8
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 5.4e-06 56.2 51 54.9
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 5.4e-06 56.2 51 56.9
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 5.4e-06 56.2 57 56.1
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.4e-06 56.2 60 56.7
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 5.4e-06 56.2 51 54.9
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 7.0e-06 55.8 41 65.9
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 7.0e-06 55.8 61 52.5
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 9.2e-06 55.5 44 59.1
Gorai.011G136500 Gossypium raimondii HOM05D007704 ORTHO05D004724 9.2e-06 55.5 93 72.0
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 9.2e-06 55.5 48 62.5


User provided reference genes

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