Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 3.2e-130 468.4 229 100.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 8.2e-86 320.9 230 70.9
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 1.8e-85 319.7 230 70.4
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.1e-85 318.9 226 69.5
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.6e-84 315.8 227 70.9
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.6e-84 315.8 227 69.2
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.6e-84 315.8 224 69.2
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 2.2e-83 312.8 229 66.4
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 5.0e-83 311.6 208 72.6
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 6.5e-83 311.2 230 69.6
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.4e-82 310.1 237 69.2
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.4e-82 310.1 237 69.2
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.9e-82 309.7 237 69.2
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.9e-82 309.7 237 69.2
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 3.2e-82 308.9 235 67.2
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.2e-82 308.5 237 69.2
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 4.2e-82 308.5 235 66.8
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 5.5e-82 308.1 230 68.3
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 5.5e-82 308.1 235 66.8
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 5.5e-82 308.1 236 68.6
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 5.5e-82 308.1 229 68.1
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 7.2e-82 307.8 229 67.7
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 9.4e-82 307.4 233 67.0
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 1.6e-81 306.6 237 66.2
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.1e-81 306.2 230 67.8
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 2.7e-81 305.8 213 71.8
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 2.7e-81 305.8 216 69.0
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 6.1e-81 304.7 212 70.8
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 1.0e-80 303.9 235 65.5
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.0e-80 303.9 225 68.9
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 1.4e-80 303.5 235 66.8
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 1.4e-80 303.5 229 68.6
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.8e-80 303.1 225 68.4
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.8e-80 303.1 225 68.4
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 8.8e-80 300.8 216 68.5
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 8.8e-80 300.8 212 69.8
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.5e-79 300.1 233 66.5
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 1.5e-79 300.1 218 67.9
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.5e-79 300.1 228 67.5
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.0e-79 299.7 214 69.2
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 2.6e-79 299.3 219 68.9
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 2.6e-79 299.3 229 66.8
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 2.6e-79 299.3 204 69.6
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 4.4e-79 298.5 239 64.4
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 7.4e-79 297.7 213 69.0
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 9.7e-79 297.4 232 65.9
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.7e-78 296.6 228 65.8
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.7e-78 296.6 235 65.5
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 2.8e-78 295.8 232 66.4
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 2.8e-78 295.8 213 68.5
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 6.3e-78 294.7 217 68.7
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 6.3e-78 294.7 228 64.9
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 8.2e-78 294.3 235 64.3
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 8.2e-78 294.3 235 64.3
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 8.2e-78 294.3 216 67.6
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.1e-77 293.9 226 65.9
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.8e-77 293.1 231 65.8
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.8e-77 293.1 210 67.6
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 2.4e-77 292.7 232 65.1
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 3.1e-77 292.4 235 63.4
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 9.1e-77 290.8 228 64.5
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 1.2e-76 290.4 206 71.8
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 1.2e-76 290.4 231 67.1
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.6e-76 289.3 207 67.6
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 4.5e-76 288.5 205 68.3
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.3e-75 287.0 208 68.8
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.3e-75 287.0 214 67.8
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 2.2e-75 286.2 214 68.2
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 2.2e-75 286.2 216 64.8
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 2.9e-75 285.8 207 67.1
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 2.9e-75 285.8 214 68.2
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 3.8e-75 285.4 212 68.4
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 3.8e-75 285.4 212 68.4
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 5.0e-75 285.0 229 63.3
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 6.5e-75 284.6 203 68.5
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 6.5e-75 284.6 194 70.1
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 8.5e-75 284.3 229 64.6
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 5.5e-74 281.6 212 64.2
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.7e-73 278.5 229 65.9
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.0e-72 277.3 215 65.1
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.4e-72 276.9 197 67.5
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 1.8e-72 276.6 236 61.4
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.1e-71 273.9 232 62.1
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.0e-71 273.1 231 59.3
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 3.3e-71 272.3 234 60.3
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 5.7e-71 271.6 233 61.8
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 7.4e-71 271.2 229 60.7
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.7e-70 270.0 215 62.3
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 3.7e-70 268.9 220 60.9
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 3.7e-70 268.9 233 61.8
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 4.1e-69 265.4 235 62.1
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 5.3e-69 265.0 220 63.2
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 2.0e-68 263.1 220 62.7
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 2.9e-67 259.2 211 63.0
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 8.5e-67 257.7 231 59.7
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.1e-66 257.3 224 62.9
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 1.9e-66 256.5 231 59.3
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.5e-66 256.1 222 57.7
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.5e-66 256.1 229 62.0
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 5.5e-66 255.0 204 62.7
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 2.1e-65 253.1 208 63.5
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 3.6e-65 252.3 208 63.5
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 3.6e-65 252.3 200 61.5
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 6.1e-65 251.5 225 59.6
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 8.0e-65 251.1 225 59.6
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 1.0e-64 250.8 225 59.6
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 1.0e-64 250.8 225 59.6
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 1.0e-64 250.8 225 59.6
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.4e-64 250.4 233 59.7
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 1.4e-64 250.4 208 62.5
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 6.8e-64 248.1 209 61.7
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 1.5e-63 246.9 235 59.1
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 3.4e-63 245.7 235 58.3
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 4.4e-63 245.4 235 58.3
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 4.4e-63 245.4 235 57.9
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 4.4e-63 245.4 235 57.9
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 5.7e-63 245.0 207 61.8
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 5.7e-63 245.0 218 59.2
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 5.7e-63 245.0 209 61.7
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 7.5e-63 244.6 235 57.9
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 2.2e-62 243.0 236 58.1
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 1.6e-60 236.9 215 60.0
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.6e-60 236.9 142 74.6
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 7.2e-58 228.0 218 59.6
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 8.8e-56 221.1 230 56.1
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 3.4e-55 219.2 229 54.6
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.4e-53 213.0 212 52.4
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 3.8e-51 205.7 201 57.2
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 3.8e-51 205.7 168 64.9
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 4.2e-50 202.2 166 61.4
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 2.7e-44 183.0 120 67.5
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 2.3e-43 179.9 120 71.7
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 6.6e-43 178.3 220 47.7
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.2e-41 174.1 210 50.0
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 1.2e-39 167.5 108 66.7
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 4.1e-37 159.1 101 69.3
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 2.0e-36 156.8 130 65.4
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 3.3e-34 149.4 104 64.4
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 3.5e-20 102.8 62 77.4
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 8.9e-16 88.2 60 66.7


User provided reference genes

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