Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C706G6 Lonicera japonica HOM05D001732 ORTHO05D003164 5.8e-62 240.7 123 100.0
Lj7A724G57 Lonicera japonica HOM05D001732 ORTHO05D003164 6.3e-24 114.4 90 64.4
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 4.5e-22 108.2 100 59.0
Nitab4.5_0003634g0010 Nicotiana tabacum HOM05D001732 ORTHO05D003164 8.5e-21 104.0 96 60.4
Cc08_g00540 Coffea canephora HOM05D001732 ORTHO05D003164 7.2e-20 100.9 75 61.3
Hma1.2p1_0243F.1_g100870 Hydrangea macrophylla HOM05D001732 ORTHO05D003164 1.8e-18 96.3 92 56.5
DCAR_001530 Daucus carota HOM05D001732 ORTHO05D003164 3.9e-18 95.1 81 59.3
Haze_21509 Corylus avellana HOM05D001732 ORTHO05D003164 5.1e-18 94.7 95 56.8
Peaxi162Scf00643g00113 Petunia axillaris HOM05D001732 ORTHO05D003164 6.7e-18 94.4 88 58.0
Dinv08636 Davidia involucrata HOM05D002754 ORTHO05D003271 8.8e-18 94.0 87 60.9
RcHm_v2.0_Chr6g0297801 Rosa chinensis HOM05D001732 ORTHO05D003164 1.9e-17 92.8 87 60.9
Prupe.1G481900 Prunus persica HOM05D001732 ORTHO05D003164 4.3e-17 91.7 72 68.1
TWI34G0604 Tripterygium wilfordii HOM05D001732 ORTHO05D003164 1.7e-16 89.7 83 57.8
CAN.G1230.4 Capsicum annuum HOM05D001732 ORTHO05D003164 2.8e-16 89.0 96 51.0
FAN20G3220 Fragaria x ananassa HOM05D002754 ORTHO05D003271 3.7e-16 88.6 79 63.3
Actinidia13227 Actinidia chinensis HOM05D001732 ORTHO05D003164 6.3e-16 87.8 75 60.0
FAN24G0193 Fragaria x ananassa HOM05D002754 ORTHO05D003271 6.3e-16 87.8 86 57.0
CiPaw.08G010600 Carya illinoinensis HOM05D001732 ORTHO05D003164 1.4e-15 86.7 84 58.3
DCAR_006213 Daucus carota HOM05D001732 ORTHO05D003164 1.4e-15 86.7 68 60.3
MD08G1155200 Malus domestica HOM05D001732 ORTHO05D003164 2.4e-15 85.9 73 64.4
SGA_v2.0_scaffold64G21950 Striga asiatica HOM05D001732 ORTHO05D003164 3.1e-15 85.5 86 57.0
TWI32G1257 Tripterygium wilfordii HOM05D001732 ORTHO05D003164 6.9e-15 84.3 62 64.5
Oeu057297.1 Olea europaea HOM05D001732 ORTHO05D003164 9.1e-15 84.0 59 69.5
PGR044G0721 Punica granatum HOM05D001732 ORTHO05D003164 9.1e-15 84.0 72 58.3
EL10Ac2g04206 Beta vulgaris HOM05D001732 ORTHO05D003164 1.2e-14 83.6 82 54.9
Solyc06g066010.3 Solanum lycopersicum HOM05D001732 ORTHO05D003164 1.2e-14 83.6 95 49.5
Migut.A00036 Erythranthe guttata HOM05D001732 ORTHO05D003164 1.5e-14 83.2 70 61.4
Thhalv10026098m.g Eutrema salsugineum HOM05D001732 ORTHO05D003164 1.5e-14 83.2 61 68.9
MD15G1126000 Malus domestica HOM05D001732 ORTHO05D003164 1.5e-14 83.2 63 63.5
Oeu042704.1 Olea europaea HOM05D001732 ORTHO05D003164 1.5e-14 83.2 90 51.1
Thecc.09G023600 Theobroma cacao HOM05D001732 ORTHO05D003164 1.5e-14 83.2 87 51.7
Sp7g30010 Schrenkiella parvula HOM05D001732 ORTHO05D003164 2.0e-14 82.8 60 70.0
SGA_v2.0_scaffold20G09113 Striga asiatica HOM05D001732 ORTHO05D003164 2.0e-14 82.8 69 56.5
Sopen06g024490 Solanum pennellii HOM05D001732 ORTHO05D003164 2.6e-14 82.4 95 48.4
CANSAT25G2751 Cannabis sativa HOM05D001732 ORTHO05D003164 3.4e-14 82.0 63 65.1
Lsat_1_v5_gn_5_30260 Lactuca sativa HOM05D001732 ORTHO05D003164 4.5e-14 81.6 58 72.4
Nitab4.5_0004887g0010 Nicotiana tabacum HOM05D001732 ORTHO05D003164 4.5e-14 81.6 98 52.0
BolC1t00668H Brassica oleracea HOM05D001732 ORTHO05D003164 5.9e-14 81.3 60 68.3
Cpa.g.sc217.7 Carica papaya HOM05D001732 ORTHO05D003164 1.0e-13 80.5 83 57.8
Nitab4.5_0002042g0100 Nicotiana tabacum HOM05D001732 ORTHO05D003164 1.0e-13 80.5 98 52.0
AL7G19600 Arabidopsis lyrata HOM05D001732 ORTHO05D003164 1.3e-13 80.1 60 66.7
AT4G32270 Arabidopsis thaliana HOM05D001732 ORTHO05D003164 1.3e-13 80.1 60 66.7
A01p06130 Brassica napus HOM05D001732 ORTHO05D003164 1.3e-13 80.1 60 66.7
BraA01t00576Z Brassica rapa HOM05D001732 ORTHO05D003164 1.3e-13 80.1 60 66.7
Carub.0007s0833 Capsella rubella HOM05D001732 ORTHO05D003164 1.3e-13 80.1 60 66.7
BcaC09g52007 Brassica carinata HOM05D001732 ORTHO05D003164 2.2e-13 79.3 60 66.7
CARHR240150 Cardamine hirsuta HOM05D001732 ORTHO05D003164 2.2e-13 79.3 60 65.0
HanXRQChr16g0510791 Helianthus annuus HOM05D001732 ORTHO05D003164 2.2e-13 79.3 58 67.2
BcaNung03578 Brassica carinata HOM05D001732 ORTHO05D003164 2.9e-13 79.0 59 67.8
C07p59120 Brassica napus HOM05D001732 ORTHO05D003164 2.9e-13 79.0 59 67.8
PGSC0003DMG400020464 Solanum tuberosum HOM05D001732 ORTHO05D003164 2.9e-13 79.0 95 47.4
GSVIVG01035868001 Vitis vinifera HOM05D001732 ORTHO05D003164 2.9e-13 79.0 62 62.9
COL.COLO4_18867 Corchorus olitorius HOM05D001732 ORTHO05D003164 3.8e-13 78.6 85 50.6
Manes.03G014000 Manihot esculenta HOM05D001732 ORTHO05D003164 3.8e-13 78.6 89 49.4
C01p06760 Brassica napus HOM05D001732 ORTHO05D003164 5.0e-13 78.2 60 65.0
BraA08t33784Z Brassica rapa HOM05D001732 ORTHO05D003164 5.0e-13 78.2 64 64.1
CARHR115030 Cardamine hirsuta HOM05D001732 ORTHO05D003164 5.0e-13 78.2 76 56.6
Sc09g0008140 Simmondsia chinensis HOM05D001732 ORTHO05D003164 5.0e-13 78.2 54 74.1
BcaNung03146 Brassica carinata HOM05D001732 ORTHO05D003164 8.5e-13 77.4 60 65.0
Eucgr.C02766 Eucalyptus grandis HOM05D001732 ORTHO05D003164 8.5e-13 77.4 78 56.4
Eucgr.L01003 Eucalyptus grandis HOM05D001732 ORTHO05D003164 8.5e-13 77.4 78 55.1
MSTRG.26011 Avicennia marina HOM05D001732 ORTHO05D003164 1.4e-12 76.6 70 54.3
BcaB03g12736 Brassica carinata HOM05D001732 ORTHO05D003164 1.4e-12 76.6 59 66.1
A08p18260 Brassica napus HOM05D001732 ORTHO05D003164 1.4e-12 76.6 59 66.1
Duzib168G0056 Durio zibethinus HOM05D001732 ORTHO05D003164 1.4e-12 76.6 87 50.6
Duzib187G0714 Durio zibethinus HOM05D001732 ORTHO05D003164 1.4e-12 76.6 87 50.6
Atru.chr7.2440 Acer truncatum HOM05D001732 ORTHO05D003164 4.2e-12 75.1 68 57.4
Peaxi162Scf00663g00319 Petunia axillaris HOM05D001732 ORTHO05D003164 4.2e-12 75.1 93 47.3
Aa31LG2G17710 Aethionema arabicum HOM05D001732 ORTHO05D003164 5.5e-12 74.7 70 58.6
MD15G1168600 Malus domestica HOM05D001732 ORTHO05D003164 5.5e-12 74.7 89 50.6
Hund25791 Selenicereus undatus HOM05D001732 ORTHO05D003164 5.5e-12 74.7 54 66.7
FAN27G1874 Fragaria x ananassa HOM05D001732 ORTHO05D003164 9.4e-12 73.9 86 52.3
Glyma.17G211600 Glycine max HOM05D001732 ORTHO05D003164 1.2e-11 73.6 62 59.7
QL02p021507 Quercus lobata HOM05D001732 ORTHO05D003164 1.2e-11 73.6 77 55.8
A03p61260 Brassica napus HOM05D001732 ORTHO05D003164 1.6e-11 73.2 59 69.5
AUR62031528 Chenopodium quinoa HOM05D001732 ORTHO05D003164 1.6e-11 73.2 84 51.2
SalBow4G1499 Salvia bowleyana HOM05D001732 ORTHO05D003164 1.6e-11 73.2 86 50.0
BolC3t21051H Brassica oleracea HOM05D001732 ORTHO05D003164 2.1e-11 72.8 59 62.7
AUR62012406 Chenopodium quinoa HOM05D001732 ORTHO05D003164 2.7e-11 72.4 84 51.2
BraA03t15170Z Brassica rapa HOM05D001732 ORTHO05D003164 4.7e-11 71.6 59 67.8
Glyma.14G116100 Glycine max HOM05D001732 ORTHO05D003164 7.9e-11 70.9 54 63.0
Lj5g0003653 Lotus japonicus HOM05D001732 ORTHO05D003164 7.9e-11 70.9 60 56.7
arahy.Tifrunner.gnm1.ann1.S7PM4Y Arachis hypogaea HOM05D001732 ORTHO05D003164 1.0e-10 70.5 54 61.1
Ca_13031_v3 Cicer arietinum L. HOM05D001732 ORTHO05D003164 1.0e-10 70.5 55 67.3
CsaV3_3G046350 Cucumis sativus L. HOM05D001732 ORTHO05D003164 1.0e-10 70.5 57 63.2
Ciclev10010145m.g Citrus clementina HOM05D001732 ORTHO05D003164 1.4e-10 70.1 98 43.9
Gorai.001G034300 Gossypium raimondii HOM05D001732 ORTHO05D003164 1.4e-10 70.1 89 48.3
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 1.8e-10 69.7 74 52.7
Cfa013137 Carpinus fangiana HOM05D001732 ORTHO05D003164 1.8e-10 69.7 87 51.7
THA.LOC104803841 Tarenaya hassleriana HOM05D001732 ORTHO05D003164 1.8e-10 69.7 62 61.3
arahy.Tifrunner.gnm1.ann1.AX4MZY Arachis hypogaea HOM05D001732 ORTHO05D003164 2.3e-10 69.3 54 59.3
CAN.G320.6 Capsicum annuum HOM05D001732 ORTHO05D003164 2.3e-10 69.3 90 44.4
Gohir.D07G032750 Gossypium hirsutum HOM05D001732 ORTHO05D003164 2.3e-10 69.3 89 48.3
MELO3C003704.2 Cucumis melo HOM05D001732 ORTHO05D003164 3.9e-10 68.6 57 61.4
ECA246G4408 Erigeron canadensis HOM05D001732 ORTHO05D003164 3.9e-10 68.6 60 60.0
arahy.Tifrunner.gnm1.ann1.Y1D5BV Arachis hypogaea HOM05D001732 ORTHO05D003164 5.1e-10 68.2 55 61.8
arahy.Tifrunner.gnm1.ann1.Z9URD8 Arachis hypogaea HOM05D001732 ORTHO05D003164 5.1e-10 68.2 55 61.8
Gohir.A07G028675 Gossypium hirsutum HOM05D001732 ORTHO05D003164 5.1e-10 68.2 89 47.2
Nn8g39520 Nelumbo nucifera HOM05D001732 ORTHO05D003164 6.7e-10 67.8 55 61.8
Sed0025607 Sechium edule HOM05D001732 ORTHO05D003164 8.8e-10 67.4 69 49.3
Gohir.A08G252200 Gossypium hirsutum HOM05D001732 ORTHO05D003164 1.1e-09 67.0 51 62.7
Gohir.D08G273800 Gossypium hirsutum HOM05D001732 ORTHO05D003164 1.1e-09 67.0 51 62.7
Gorai.004G292300 Gossypium raimondii HOM05D001732 ORTHO05D003164 1.1e-09 67.0 51 62.7
Psat0s3273g0080 Pisum sativum HOM05D001732 ORTHO05D003164 1.1e-09 67.0 91 42.9
Potri.006G255500 Populus trichocarpa HOM05D001732 ORTHO05D003164 1.1e-09 67.0 62 59.7
PGSC0003DMG400026656 Solanum tuberosum HOM05D001732 ORTHO05D003164 1.5e-09 66.6 90 44.4
BcaNung03216 Brassica carinata HOM05D001732 ORTHO05D003164 2.0e-09 66.2 53 56.6
FAN26G0972 Fragaria x ananassa HOM05D001732 ORTHO05D003164 2.0e-09 66.2 80 46.2
MD02G1027100 Malus domestica HOM05D001732 ORTHO05D003164 2.0e-09 66.2 57 57.9
Phvul.001G050800 Phaseolus vulgaris HOM05D001732 ORTHO05D003164 2.0e-09 66.2 50 64.0
Solyc08g023630.3 Solanum lycopersicum HOM05D001732 ORTHO05D003164 2.0e-09 66.2 90 44.4
VMungo0647G2563 Vigna mungo HOM05D001732 ORTHO05D003164 2.0e-09 66.2 65 53.8
TAR383G0496 Trochodendron aralioides HOM05D001732 ORTHO05D003164 2.6e-09 65.9 67 53.7
CiPaw.04G174500 Carya illinoinensis HOM05D001732 ORTHO05D003164 3.3e-09 65.5 50 62.0
Aa31LG11G4510 Aethionema arabicum HOM05D001732 ORTHO05D003164 5.7e-09 64.7 56 53.6
AT5G25340 Arabidopsis thaliana HOM05D001732 ORTHO05D003164 5.7e-09 64.7 53 56.6
BcaNung02272 Brassica carinata HOM05D001732 ORTHO05D003164 5.7e-09 64.7 53 54.7
C07p42500 Brassica napus HOM05D001732 ORTHO05D003164 5.7e-09 64.7 53 54.7
BolC7t44778H Brassica oleracea HOM05D001732 ORTHO05D003164 5.7e-09 64.7 53 54.7
CARHR188060 Cardamine hirsuta HOM05D001732 ORTHO05D003164 5.7e-09 64.7 53 56.6
Sp2g22200 Schrenkiella parvula HOM05D001732 ORTHO05D003164 5.7e-09 64.7 53 54.7
AL6G37070 Arabidopsis lyrata HOM05D001732 ORTHO05D003164 7.4e-09 64.3 53 56.6
Thhalv10004912m.g Eutrema salsugineum HOM05D001732 ORTHO05D003164 7.4e-09 64.3 53 56.6
FAN23G3115 Fragaria x ananassa HOM05D001732 ORTHO05D003164 7.4e-09 64.3 80 45.0
FAN28G1192 Fragaria x ananassa HOM05D001732 ORTHO05D003164 7.4e-09 64.3 80 46.2
Glyma.06G067500 Glycine max HOM05D001732 ORTHO05D003164 7.4e-09 64.3 58 58.6
Medtr1g012600 Medicago truncatula HOM05D001732 ORTHO05D003164 7.4e-09 64.3 51 58.8
A02p39780 Brassica napus HOM05D001732 ORTHO05D003164 9.7e-09 63.9 53 54.7
BraA02t08944Z Brassica rapa HOM05D001732 ORTHO05D003164 9.7e-09 63.9 53 54.7
TPR.G15647 Trifolium pratense HOM05D001732 ORTHO05D003164 9.7e-09 63.9 70 48.6
A06p36080 Brassica napus HOM05D001732 ORTHO05D003164 1.3e-08 63.5 53 54.7
BraA06t26529Z Brassica rapa HOM05D001732 ORTHO05D003164 1.3e-08 63.5 53 54.7
FvH4_1g02640 Fragaria vesca HOM05D001732 ORTHO05D003164 1.3e-08 63.5 80 45.0
Carub.0006s2316 Capsella rubella HOM05D001732 ORTHO05D003164 1.7e-08 63.2 53 54.7
Lalb_Chr08g0244121 Lupinus albus HOM05D001732 ORTHO05D003164 1.7e-08 63.2 59 55.9
Nitab4.5_0000373g0090 Nicotiana tabacum HOM05D001732 ORTHO05D003164 1.7e-08 63.2 57 61.4
Dinv30611 Davidia involucrata HOM05D001732 ORTHO05D003164 2.2e-08 62.8 57 57.9
Lj1g0016479 Lotus japonicus HOM05D001732 ORTHO05D003164 2.2e-08 62.8 62 51.6
Rhsim07G0159600 Rhododendron simsii HOM05D001732 ORTHO05D003164 2.2e-08 62.8 92 44.6
Sopen08g010490 Solanum pennellii HOM05D001732 ORTHO05D003164 2.2e-08 62.8 90 42.2
Nn2g12099 Nelumbo nucifera HOM05D001732 ORTHO05D003164 3.7e-08 62.0 52 59.6
Prupe.7G247900 Prunus persica HOM05D001732 ORTHO05D003164 4.8e-08 61.6 47 61.7
unitig_748.g8079 Utricularia gibba HOM05D001732 ORTHO05D003164 4.8e-08 61.6 46 65.2
BcaC03g17909 Brassica carinata HOM05D001732 ORTHO05D003164 6.3e-08 61.2 53 52.8
C02p59570 Brassica napus HOM05D001732 ORTHO05D003164 6.3e-08 61.2 53 52.8
BolC2t12019H Brassica oleracea HOM05D001732 ORTHO05D003164 6.3e-08 61.2 53 52.8
Gohir.A06G098500 Gossypium hirsutum HOM05D001732 ORTHO05D003164 8.2e-08 60.8 53 54.7
Gohir.D06G100600 Gossypium hirsutum HOM05D001732 ORTHO05D003164 8.2e-08 60.8 53 54.7
Gorai.010G115600 Gossypium raimondii HOM05D001732 ORTHO05D003164 8.2e-08 60.8 53 54.7
Sopen06g025440 Solanum pennellii HOM05D001732 ORTHO05D003164 8.2e-08 60.8 66 51.5
QL02p089729 Quercus lobata HOM05D001732 ORTHO05D003164 1.1e-07 60.5 51 52.9
Solyc06g068170.2 Solanum lycopersicum HOM05D001732 ORTHO05D003164 1.1e-07 60.5 66 51.5
PGSC0003DMG400028508 Solanum tuberosum HOM05D001732 ORTHO05D003164 1.1e-07 60.5 66 51.5
CiPaw.03G247600 Carya illinoinensis HOM05D001732 ORTHO05D003164 1.4e-07 60.1 47 61.7
Phvul.009G092432 Phaseolus vulgaris HOM05D001732 ORTHO05D003164 1.4e-07 60.1 51 58.8
THA.LOC104799708 Tarenaya hassleriana HOM05D001732 ORTHO05D003164 1.4e-07 60.1 58 43.1
Peaxi162Scf00207g00637 Petunia axillaris HOM05D001732 ORTHO05D003164 1.8e-07 59.7 47 61.7
ECA232G4471 Erigeron canadensis HOM05D001732 ORTHO05D003164 2.4e-07 59.3 54 53.7
HanXRQChr13g0403041 Helianthus annuus HOM05D001732 ORTHO05D003164 2.4e-07 59.3 71 46.5
ATR0800G055 Amborella trichopoda HOM05D001732 ORTHO05D003164 5.3e-07 58.2 48 58.3
GSVIVG01017347001 Vitis vinifera HOM05D000001 ORTHO05D000003 7.0e-07 57.8 51 54.9
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 9.1e-07 57.4 49 61.2
FAN14G0646 Fragaria x ananassa HOM05D001732 ORTHO05D003164 9.1e-07 57.4 66 48.5
Zm00001eb234770 Zea mays HOM05D001732 ORTHO05D003164 9.1e-07 57.4 64 50.0
Lsat_1_v5_gn_6_21220 Lactuca sativa HOM05D001732 ORTHO05D003164 1.2e-06 57.0 56 51.8
TAR626G1621 Trochodendron aralioides HOM05D001732 ORTHO05D003164 1.2e-06 57.0 72 44.4
MSTRG.22750 Avicennia marina HOM05D001732 ORTHO05D003164 1.5e-06 56.6 52 48.1
MD17G1213000 Malus domestica HOM05D001732 ORTHO05D003164 1.5e-06 56.6 58 53.4
CSS0043208 Camellia sinensis var. sinensis HOM05D001732 ORTHO05D003164 2.0e-06 56.2 57 52.6
ECA233G0975 Erigeron canadensis HOM05D001732 ORTHO05D003164 2.0e-06 56.2 69 46.4
FvH4_6g29570 Fragaria vesca HOM05D001732 ORTHO05D003164 2.0e-06 56.2 66 47.0
FAN05G3434 Fragaria x ananassa HOM05D001732 ORTHO05D003164 2.0e-06 56.2 59 50.8
Nitab4.5_0006769g0020 Nicotiana tabacum HOM05D001732 ORTHO05D003164 2.0e-06 56.2 65 52.3
Lalb_Chr24g0402121 Lupinus albus HOM05D001732 ORTHO05D003164 2.6e-06 55.8 44 56.8
Glyma.04G066100 Glycine max HOM05D001732 ORTHO05D003164 3.4e-06 55.5 51 56.9
MBI14_g02326_MAGBIO Magnolia biondii HOM05D001732 ORTHO05D003164 3.4e-06 55.5 48 50.0
Prupe.3G088400 Prunus persica HOM05D001732 ORTHO05D003164 3.4e-06 55.5 78 42.3
Sed0023402 Sechium edule HOM05D001732 ORTHO05D003164 4.5e-06 55.1 50 52.0
CsaV3_1G026670 Cucumis sativus L. HOM05D001732 ORTHO05D003164 5.9e-06 54.7 76 35.5
Cfa001955 Carpinus fangiana HOM05D001732 ORTHO05D003164 7.7e-06 54.3 101 38.6
Rhsim08G0212500 Rhododendron simsii HOM05D001732 ORTHO05D003164 7.7e-06 54.3 55 52.7


User provided reference genes

Program Settings