Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C694T2 Lonicera japonica HOM05D000542 ORTHO05D000202 1.6e-78 296.2 168 100.0
Lj8A690T43 Lonicera japonica HOM05D000542 ORTHO05D000202 3.9e-45 185.3 107 90.7
Lj8A693G8 Lonicera japonica HOM05D000542 ORTHO05D000202 2.9e-40 169.1 114 81.6
Lj8A691G18 Lonicera japonica HOM05D000542 ORTHO05D000202 1.6e-38 163.3 110 80.9
Lj8C692T1 Lonicera japonica HOM05D000542 ORTHO05D000202 3.6e-38 162.2 119 77.3
Lj8A691T19 Lonicera japonica HOM05D000542 ORTHO05D000202 2.3e-37 159.5 122 74.6
Lj7C708T7 Lonicera japonica HOM05D000542 ORTHO05D000202 3.6e-30 135.6 75 88.0
CSS0015194 Camellia sinensis var. sinensis HOM05D000542 ORTHO05D000202 2.7e-22 109.4 91 62.6
Hma1.2p1_0140F.1_g063630 Hydrangea macrophylla HOM05D000542 ORTHO05D000202 6.1e-22 108.2 83 67.5
Rhsim07G0154100 Rhododendron simsii HOM05D000542 ORTHO05D000202 4.0e-21 105.5 82 68.3
Haze_21834 Corylus avellana HOM05D000542 ORTHO05D000202 5.2e-21 105.1 86 66.3
Dinv14216 Davidia involucrata HOM05D000542 ORTHO05D000202 1.5e-20 103.6 66 74.2
Cfa013337 Carpinus fangiana HOM05D000542 ORTHO05D000202 3.4e-20 102.4 86 66.3
Ciclev10008742m.g Citrus clementina HOM05D000542 ORTHO05D000202 3.4e-20 102.4 83 66.3
Haze_21829 Corylus avellana HOM05D000542 ORTHO05D000202 1.7e-19 100.1 76 67.1
Potri.006G243600 Populus trichocarpa HOM05D000542 ORTHO05D000202 1.7e-19 100.1 76 65.8
Dinv14219 Davidia involucrata HOM05D000542 ORTHO05D000202 1.8e-18 96.7 106 52.8
Manes.03G066380 Manihot esculenta HOM05D000542 ORTHO05D000202 1.8e-18 96.7 76 63.2
TWI32G1221 Tripterygium wilfordii HOM05D000542 ORTHO05D000202 1.8e-18 96.7 86 57.0
TAR383G0864 Trochodendron aralioides HOM05D000542 ORTHO05D000202 2.4e-18 96.3 78 65.4
QL12p026208 Quercus lobata HOM05D000542 ORTHO05D000202 4.1e-18 95.5 76 61.8
GSVIVG01035679001 Vitis vinifera HOM05D000542 ORTHO05D000202 5.4e-18 95.1 85 56.5
Potri.018G036700 Populus trichocarpa HOM05D000542 ORTHO05D000202 7.0e-18 94.7 76 61.8
Actinidia14657 Actinidia chinensis HOM05D000542 ORTHO05D000202 9.2e-18 94.4 74 62.2
CiPaw.07G207900 Carya illinoinensis HOM05D000542 ORTHO05D000202 1.2e-17 94.0 83 62.7
Prupe.1G453500 Prunus persica HOM05D000542 ORTHO05D000202 3.5e-17 92.4 76 59.2
Atru.chr7.2175 Acer truncatum HOM05D000542 ORTHO05D000202 4.5e-17 92.0 73 64.4
Atru.chr7.2292 Acer truncatum HOM05D000542 ORTHO05D000202 4.5e-17 92.0 73 64.4
SGA_v2.0_scaffold243G44299 Striga asiatica HOM05D000542 ORTHO05D000202 5.9e-17 91.7 103 52.4
Cc08_g08460 Coffea canephora HOM05D000542 ORTHO05D000202 7.7e-17 91.3 74 63.5
TWI63G0293 Tripterygium wilfordii HOM05D000542 ORTHO05D000202 7.7e-17 91.3 98 48.0
Atru.chr7.2173 Acer truncatum HOM05D000542 ORTHO05D000202 1.0e-16 90.9 73 65.8
Cpa.g.sc205.1 Carica papaya HOM05D000542 ORTHO05D000202 1.0e-16 90.9 104 51.0
Glyma.04G079600 Glycine max HOM05D000542 ORTHO05D000202 1.0e-16 90.9 86 57.0
VMungo1309G0525 Vigna mungo HOM05D000542 ORTHO05D000202 1.0e-16 90.9 84 56.0
Lj1g0008280 Lotus japonicus HOM05D000542 ORTHO05D000202 1.3e-16 90.5 76 59.2
Lalb_Chr08g0243311 Lupinus albus HOM05D000542 ORTHO05D000202 1.3e-16 90.5 76 55.3
GSVIVG01035682001 Vitis vinifera HOM05D000542 ORTHO05D000202 1.3e-16 90.5 84 59.5
Atru.chr7.2289 Acer truncatum HOM05D000542 ORTHO05D000202 2.3e-16 89.7 64 67.2
Solyc08g068150.4 Solanum lycopersicum HOM05D000542 ORTHO05D000202 2.9e-16 89.4 138 45.7
Actinidia12835 Actinidia chinensis HOM05D000542 ORTHO05D000202 3.8e-16 89.0 102 49.0
Atru.chr7.2290 Acer truncatum HOM05D000542 ORTHO05D000202 6.6e-16 88.2 69 66.7
Actinidia15724 Actinidia chinensis HOM05D000542 ORTHO05D000202 8.6e-16 87.8 76 63.2
EL10Ac2g04088 Beta vulgaris HOM05D000542 ORTHO05D000202 1.5e-15 87.0 85 58.8
Lj1g0023869 Lotus japonicus HOM05D000542 ORTHO05D000202 1.5e-15 87.0 76 57.9
Peaxi162Scf00105g00026 Petunia axillaris HOM05D000542 ORTHO05D000202 1.5e-15 87.0 74 58.1
Thecc.09G038800 Theobroma cacao HOM05D000542 ORTHO05D000202 1.5e-15 87.0 93 54.8
Glyma.06G081100 Glycine max HOM05D000542 ORTHO05D000202 1.9e-15 86.7 86 54.7
FAN27G2567 Fragaria x ananassa HOM05D000542 ORTHO05D000202 4.3e-15 85.5 76 56.6
Glyma.14G140900 Glycine max HOM05D000542 ORTHO05D000202 4.3e-15 85.5 108 50.9
Hund23043 Selenicereus undatus HOM05D000542 ORTHO05D000202 4.3e-15 85.5 89 53.9
Hma1.2p1_0003F.1_g003730 Hydrangea macrophylla HOM05D000542 ORTHO05D000202 5.6e-15 85.1 77 62.3
Hund19556 Selenicereus undatus HOM05D000542 ORTHO05D000202 5.6e-15 85.1 97 52.6
TPR.G11983 Trifolium pratense HOM05D000542 ORTHO05D000202 5.6e-15 85.1 76 57.9
Phvul.009G105300 Phaseolus vulgaris HOM05D000542 ORTHO05D000202 7.3e-15 84.7 85 52.9
COL.COLO4_18704 Corchorus olitorius HOM05D000542 ORTHO05D000202 9.5e-15 84.3 76 56.6
Gohir.D05G050600 Gossypium hirsutum HOM05D000542 ORTHO05D000202 9.5e-15 84.3 79 58.2
Gorai.009G052100 Gossypium raimondii HOM05D000542 ORTHO05D000202 9.5e-15 84.3 79 58.2
MD15G1098800 Malus domestica HOM05D000542 ORTHO05D000202 9.5e-15 84.3 123 45.5
Medtr1g008500 Medicago truncatula HOM05D000542 ORTHO05D000202 9.5e-15 84.3 76 57.9
Medtr3g109490 Medicago truncatula HOM05D000542 ORTHO05D000202 9.5e-15 84.3 142 40.1
Nitab4.5_0001403g0020 Nicotiana tabacum HOM05D000542 ORTHO05D000202 9.5e-15 84.3 82 56.1
Phvul.008G158600 Phaseolus vulgaris HOM05D000542 ORTHO05D000202 1.2e-14 84.0 85 58.8
Sopen08g022010 Solanum pennellii HOM05D000542 ORTHO05D000202 1.2e-14 84.0 103 50.5
AUR62023032 Chenopodium quinoa HOM05D000542 ORTHO05D000202 2.1e-14 83.2 85 56.5
AUR62044620 Chenopodium quinoa HOM05D000542 ORTHO05D000202 2.8e-14 82.8 108 49.1
Gohir.A05G048700 Gossypium hirsutum HOM05D000542 ORTHO05D000202 2.8e-14 82.8 79 57.0
FvH4_2g36250 Fragaria vesca HOM05D000542 ORTHO05D000202 3.6e-14 82.4 76 55.3
Nitab4.5_0000250g0250 Nicotiana tabacum HOM05D000542 ORTHO05D000202 3.6e-14 82.4 81 58.0
HanXRQChr01g0029501 Helianthus annuus HOM05D000542 ORTHO05D000202 4.7e-14 82.0 74 55.4
AUR62009353 Chenopodium quinoa HOM05D000542 ORTHO05D000202 6.1e-14 81.6 85 57.6
DCAR_004505 Daucus carota HOM05D000542 ORTHO05D000202 6.1e-14 81.6 109 44.0
HanXRQChr01g0029491 Helianthus annuus HOM05D000542 ORTHO05D000202 6.1e-14 81.6 74 55.4
Medtr1g008590 Medicago truncatula HOM05D000542 ORTHO05D000202 6.1e-14 81.6 87 52.9
Hma1.2p1_0450F.1_g155650 Hydrangea macrophylla HOM05D000542 ORTHO05D000202 8.0e-14 81.3 65 67.7
TPR.G11992 Trifolium pratense HOM05D000542 ORTHO05D000202 8.0e-14 81.3 87 54.0
HanXRQChr01g0029521 Helianthus annuus HOM05D000542 ORTHO05D000202 1.0e-13 80.9 74 54.1
PGSC0003DMG400014509 Solanum tuberosum HOM05D000542 ORTHO05D000202 1.0e-13 80.9 85 57.6
Glyma.14G141000 Glycine max HOM05D000542 ORTHO05D000202 1.4e-13 80.5 77 54.5
arahy.Tifrunner.gnm1.ann1.NG4XB7 Arachis hypogaea HOM05D000542 ORTHO05D000202 3.0e-13 79.3 73 54.8
DCAR_000738 Daucus carota HOM05D000542 ORTHO05D000202 3.0e-13 79.3 80 52.5
Gorai.009G052200 Gossypium raimondii HOM05D000542 ORTHO05D000202 4.0e-13 79.0 76 56.6
ECA248G3861 Erigeron canadensis HOM05D000542 ORTHO05D000202 5.2e-13 78.6 75 54.7
FAN20G0120 Fragaria x ananassa HOM05D000542 ORTHO05D000202 5.2e-13 78.6 76 52.6
Actinidia14658 Actinidia chinensis HOM05D000542 ORTHO05D000202 6.8e-13 78.2 77 53.2
Gohir.D05G050700 Gossypium hirsutum HOM05D000542 ORTHO05D000202 8.9e-13 77.8 76 56.6
Sed0010077 Sechium edule HOM05D000542 ORTHO05D000202 8.9e-13 77.8 76 52.6
Oeu027036.1 Olea europaea HOM05D000542 ORTHO05D000202 1.2e-12 77.4 84 54.8
vmacro05356 Vaccinium macrocarpon HOM05D000542 ORTHO05D000202 1.2e-12 77.4 98 54.1
Cc08_g08470 Coffea canephora HOM05D000542 ORTHO05D000202 1.5e-12 77.0 84 47.6
TAR624G0341 Trochodendron aralioides HOM05D000542 ORTHO05D000202 1.5e-12 77.0 76 55.3
Eucgr.C02887 Eucalyptus grandis HOM05D000542 ORTHO05D000202 2.0e-12 76.6 78 52.6
Thecc.09G038700 Theobroma cacao HOM05D000542 ORTHO05D000202 2.0e-12 76.6 75 52.0
vmacro23259 Vaccinium macrocarpon HOM05D000542 ORTHO05D000202 2.0e-12 76.6 59 61.0
Sabra06G0190800 Salix brachista HOM05D000542 ORTHO05D000202 3.4e-12 75.9 122 40.2
Duzib150G0871 Durio zibethinus HOM05D000542 ORTHO05D000202 4.4e-12 75.5 108 47.2
Medtr0312s0030 Medicago truncatula HOM05D000542 ORTHO05D000202 5.7e-12 75.1 87 49.4
Medtr1g007520 Medicago truncatula HOM05D000542 ORTHO05D000202 5.7e-12 75.1 87 49.4
Psat6g033920 Pisum sativum HOM05D000542 ORTHO05D000202 5.7e-12 75.1 88 47.7
vmacro22208 Vaccinium macrocarpon HOM05D000542 ORTHO05D000202 7.5e-12 74.7 55 63.6
MELO3C003592.2 Cucumis melo HOM05D000542 ORTHO05D000202 9.8e-12 74.3 76 52.6
Manes.16G066600 Manihot esculenta HOM05D000542 ORTHO05D000202 2.2e-11 73.2 76 50.0
PSO782G5471 Papaver somniferum HOM05D000542 ORTHO05D000202 2.2e-11 73.2 85 48.2
TAR624G1414 Trochodendron aralioides HOM05D000542 ORTHO05D000202 2.2e-11 73.2 73 56.2
Lsat_1_v5_gn_1_48880 Lactuca sativa HOM05D000542 ORTHO05D000202 2.9e-11 72.8 75 50.7
PSO198G0076 Papaver somniferum HOM05D000542 ORTHO05D000202 3.7e-11 72.4 85 48.2
Sabra18G0037300 Salix brachista HOM05D000542 ORTHO05D000202 3.7e-11 72.4 81 51.9
Aqoxy7G01674 Aquilegia oxysepala HOM05D000542 ORTHO05D000202 4.9e-11 72.0 77 55.8
CAN.G1060.2 Capsicum annuum HOM05D000542 ORTHO05D000202 4.9e-11 72.0 84 51.2
SalBow4G2992 Salvia bowleyana HOM05D000542 ORTHO05D000202 4.9e-11 72.0 61 60.7
Sc09g0009050 Simmondsia chinensis HOM05D000542 ORTHO05D000202 6.4e-11 71.6 108 47.2
TPR.G1345 Trifolium pratense HOM05D000542 ORTHO05D000202 8.3e-11 71.2 62 50.0
HanXRQChr13g0424661 Helianthus annuus HOM05D000542 ORTHO05D000202 1.1e-10 70.9 73 53.4
PGR044G1623 Punica granatum HOM05D000542 ORTHO05D000202 1.1e-10 70.9 108 41.7
MSTRG.25897 Avicennia marina HOM05D000542 ORTHO05D000202 1.4e-10 70.5 111 40.5
Medtr1g008510 Medicago truncatula HOM05D000542 ORTHO05D000202 1.8e-10 70.1 85 50.6
HanXRQChr02g0048371 Helianthus annuus HOM05D000542 ORTHO05D000202 2.4e-10 69.7 66 53.0
THA.LOC104799209 Tarenaya hassleriana HOM05D000542 ORTHO05D000202 2.4e-10 69.7 78 47.4
BcaB04g19783 Brassica carinata HOM05D000542 ORTHO05D000202 7.0e-10 68.2 77 45.5
COL.COLO4_18705 Corchorus olitorius HOM05D000542 ORTHO05D000202 7.0e-10 68.2 79 49.4
Duzib168G1394 Durio zibethinus HOM05D000542 ORTHO05D000202 7.0e-10 68.2 76 48.7
Medtr1g008560 Medicago truncatula HOM05D000542 ORTHO05D000202 7.0e-10 68.2 78 48.7
Ah.16g105070 Amaranthus hybridus HOM05D000542 ORTHO05D000202 9.2e-10 67.8 93 45.2
HanXRQChr01g0029411 Helianthus annuus HOM05D000542 ORTHO05D221255 1.2e-09 67.4 54 61.1
BcaC03g17899 Brassica carinata HOM05D000542 ORTHO05D000202 2.0e-09 66.6 57 52.6
C02p59420 Brassica napus HOM05D000542 ORTHO05D000202 2.0e-09 66.6 57 52.6
BolC2t12005H Brassica oleracea HOM05D000542 ORTHO05D000202 2.0e-09 66.6 57 52.6
BraA02t08930Z Brassica rapa HOM05D000542 ORTHO05D000202 2.0e-09 66.6 57 52.6
CARHR187720 Cardamine hirsuta HOM05D000542 ORTHO05D000202 2.0e-09 66.6 79 45.6
Thhalv10004736m.g Eutrema salsugineum HOM05D000542 ORTHO05D000202 2.0e-09 66.6 77 46.8
vmacro05355 Vaccinium macrocarpon HOM05D000542 ORTHO05D000202 2.0e-09 66.6 64 59.4
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 2.7e-09 66.2 78 44.9
BcaB04g19775 Brassica carinata HOM05D000542 ORTHO05D000202 4.6e-09 65.5 57 50.9
HanXRQChr01g0029431 Helianthus annuus HOM05D000542 ORTHO05D000202 4.6e-09 65.5 55 58.2
A09p06140 Brassica napus HOM05D000542 ORTHO05D000202 7.8e-09 64.7 66 43.9
TPR.G12129 Trifolium pratense HOM05D000542 ORTHO05D000202 7.8e-09 64.7 67 52.2
GSVIVG01035688001 Vitis vinifera HOM05D030542 ORTHO05D000202 7.8e-09 64.7 67 55.2
A02p39640 Brassica napus HOM05D000542 ORTHO05D000202 1.0e-08 64.3 57 50.9
C09p06770 Brassica napus HOM05D000542 ORTHO05D000202 1.0e-08 64.3 66 43.9
BolC9t53598H Brassica oleracea HOM05D000542 ORTHO05D000202 1.0e-08 64.3 66 43.9
Lsat_1_v5_gn_1_48900 Lactuca sativa HOM05D000542 ORTHO05D000202 1.3e-08 63.9 77 49.4
Sp2g21920 Schrenkiella parvula HOM05D000542 ORTHO05D000202 1.3e-08 63.9 77 44.2
Migut.A00237 Erythranthe guttata HOM05D000542 ORTHO05D000202 2.3e-08 63.2 92 44.6
Aa31LG11G4660 Aethionema arabicum HOM05D000542 ORTHO05D000202 3.0e-08 62.8 59 47.5
BcaNung04845 Brassica carinata HOM05D000542 ORTHO05D000202 3.0e-08 62.8 77 45.5
HPP92_003937 Vanilla planifolia HOM05D000542 ORTHO05D000202 3.0e-08 62.8 65 52.3
TPR.G12105 Trifolium pratense HOM05D000542 ORTHO05D000202 3.9e-08 62.4 47 59.6
BcaB07g29988 Brassica carinata HOM05D000542 ORTHO05D000202 5.0e-08 62.0 77 42.9
Lsat_1_v5_gn_1_49041 Lactuca sativa HOM05D000542 ORTHO05D000202 5.0e-08 62.0 109 40.4
Os01g0733500 Oryza sativa ssp. japonica HOM05D000542 ORTHO05D000202 5.0e-08 62.0 85 45.9
Thecc.09G242300 Theobroma cacao HOM05D000542 ORTHO05D000202 5.0e-08 62.0 48 58.3
A06p36310 Brassica napus HOM05D000542 ORTHO05D000202 8.6e-08 61.2 77 44.2
HanXRQChr10g0313851 Helianthus annuus HOM05D000542 ORTHO05D000202 8.6e-08 61.2 60 55.0
Lsat_1_v5_gn_6_11160 Lactuca sativa HOM05D000542 ORTHO05D000202 1.1e-07 60.8 64 50.0
CSS0026040 Camellia sinensis var. sinensis HOM05D000542 ORTHO05D000202 1.5e-07 60.5 48 64.6
Carub.0006s2348 Capsella rubella HOM05D000542 ORTHO05D000202 1.5e-07 60.5 77 42.9
Lsat_1_v5_gn_1_59360 Lactuca sativa HOM05D000542 ORTHO05D000202 1.5e-07 60.5 63 52.4
BcaNung03931 Brassica carinata HOM05D000542 ORTHO05D000202 1.9e-07 60.1 77 44.2
C07p42230 Brassica napus HOM05D000542 ORTHO05D000202 1.9e-07 60.1 77 44.2
BolC7t44749H Brassica oleracea HOM05D000542 ORTHO05D000202 1.9e-07 60.1 77 44.2
Lsat_1_v5_gn_1_48980 Lactuca sativa HOM05D000542 ORTHO05D000202 1.9e-07 60.1 72 50.0
AL6G37440 Arabidopsis lyrata HOM05D000542 ORTHO05D000202 3.3e-07 59.3 76 43.4
Manes.03G125200 Manihot esculenta HOM05D000542 ORTHO05D000202 3.3e-07 59.3 49 57.1
Manes.03G125700 Manihot esculenta HOM05D000542 ORTHO05D000202 3.3e-07 59.3 49 57.1
Manes.03G126100 Manihot esculenta HOM05D000542 ORTHO05D000202 3.3e-07 59.3 49 57.1
Peaxi162Scf00276g00093 Petunia axillaris HOM05D000542 ORTHO05D000202 3.3e-07 59.3 48 66.7
Manes.03G125800 Manihot esculenta HOM05D000542 ORTHO05D000202 4.3e-07 58.9 49 55.1
Medtr1g008460 Medicago truncatula HOM05D000542 ORTHO05D000202 4.3e-07 58.9 74 44.6
BraA09t36256Z Brassica rapa HOM05D000542 ORTHO05D000202 5.6e-07 58.5 97 37.1
Lalb_Chr24g0402641 Lupinus albus HOM05D000542 ORTHO05D000202 5.6e-07 58.5 84 46.4
AT5G25610 Arabidopsis thaliana HOM05D000542 ORTHO05D000202 7.3e-07 58.2 77 42.9
Manes.03G126301 Manihot esculenta HOM05D000542 ORTHO05D000202 1.6e-06 57.0 49 57.1
Gohir.D05G073650 Gossypium hirsutum HOM05D000542 ORTHO05D000202 2.1e-06 56.6 46 54.3
Medtr1g008470 Medicago truncatula HOM05D000542 ORTHO05D000202 2.1e-06 56.6 48 56.2
GSVIVG01035693001 Vitis vinifera HOM05D000542 ORTHO05D000202 2.1e-06 56.6 43 62.8
EL10Ac2g04089 Beta vulgaris HOM05D000542 ORTHO05D000202 2.8e-06 56.2 44 54.5
CANSAT25G3434 Cannabis sativa HOM05D000542 ORTHO05D000202 2.8e-06 56.2 81 48.1
Cc00_g29410 Coffea canephora HOM05D000542 ORTHO05D000202 2.8e-06 56.2 54 51.9
Zm00001eb154060 Zea mays HOM05D000542 ORTHO05D000202 2.8e-06 56.2 73 45.2
Medtr1g008450 Medicago truncatula HOM05D000542 ORTHO05D000202 3.6e-06 55.8 67 50.7
GSVIVG01035680001 Vitis vinifera HOM05D000542 ORTHO05D000202 3.6e-06 55.8 54 42.6
TPR.G12091 Trifolium pratense HOM05D000542 ORTHO05D000202 4.7e-06 55.5 51 52.9
COL.COLO4_36497 Corchorus olitorius HOM05D000542 ORTHO05D000202 6.2e-06 55.1 65 49.2
Lj1g0002852 Lotus japonicus HOM05D000542 ORTHO05D000202 8.0e-06 54.7 47 57.4
Oeu027032.1 Olea europaea HOM05D000542 ORTHO05D000202 8.0e-06 54.7 61 52.5


User provided reference genes

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