Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C677T5 Lonicera japonica HOM05D000056 ORTHO05D000019 3.6e-97 358.2 178 100.0
Lj8A678G10 Lonicera japonica HOM05D000056 ORTHO05D000019 1.3e-43 180.3 208 49.5
Lj8C653G3 Lonicera japonica HOM05D000056 ORTHO05D000019 1.3e-41 173.7 203 49.8
Lj8C677G4 Lonicera japonica HOM05D000056 ORTHO05D000019 4.8e-25 118.6 133 51.1
Lj8E666T0 Lonicera japonica HOM05D000056 ORTHO05D000019 8.2e-17 91.3 110 49.1
Lj3C13T5 Lonicera japonica HOM05D000056 ORTHO05D000019 2.3e-11 73.2 211 28.4
Lj8C651T8 Lonicera japonica HOM05D000056 ORTHO05D000019 5.7e-10 68.6 168 30.4
Haze_02774 Corylus avellana HOM05D000056 ORTHO05D000019 7.4e-10 68.2 163 35.0
Haze_16377 Corylus avellana HOM05D000056 ORTHO05D000019 1.7e-09 67.0 142 35.9
Prupe.3G130100 Prunus persica HOM05D000056 ORTHO05D000019 3.7e-09 65.9 189 29.6
Prupe.3G141900 Prunus persica HOM05D000056 ORTHO05D000019 3.7e-09 65.9 189 29.6
QL04p032552 Quercus lobata HOM05D000056 ORTHO05D000019 6.3e-09 65.1 185 29.2
CARHR121990 Cardamine hirsuta HOM05D000056 ORTHO05D000019 8.2e-09 64.7 180 29.4
Aqoxy5G03453 Aquilegia oxysepala HOM05D000056 ORTHO05D000019 1.1e-08 64.3 194 30.4
Rhsim02G0196800 Rhododendron simsii HOM05D000056 ORTHO05D000019 1.1e-08 64.3 184 28.8
GSVIVG01035820001 Vitis vinifera HOM05D000056 ORTHO05D000019 1.4e-08 63.9 145 35.2
Lj8C648T4 Lonicera japonica HOM05D000056 ORTHO05D000019 1.8e-08 63.5 183 30.6
Eucgr.C00421 Eucalyptus grandis HOM05D000056 ORTHO05D000019 2.4e-08 63.2 167 28.7
Ciclev10020402m.g Citrus clementina HOM05D000056 ORTHO05D000019 3.1e-08 62.8 161 31.1
Haze_23719 Corylus avellana HOM05D000056 ORTHO05D000019 3.1e-08 62.8 110 35.5
QL10p050252 Quercus lobata HOM05D000056 ORTHO05D000019 3.1e-08 62.8 186 27.4
PGSC0003DMG400004622 Solanum tuberosum HOM05D000056 ORTHO05D000019 3.1e-08 62.8 176 31.8
AL4G23070 Arabidopsis lyrata HOM05D000056 ORTHO05D000019 4.1e-08 62.4 193 27.5
Manes.06G167400 Manihot esculenta HOM05D000056 ORTHO05D000019 4.1e-08 62.4 194 30.9
Aa31LG10G14730 Aethionema arabicum HOM05D000056 ORTHO05D000019 5.3e-08 62.0 227 24.7
CiPaw.15G180700 Carya illinoinensis HOM05D000056 ORTHO05D000019 7.0e-08 61.6 182 28.0
Solyc12g099300.1 Solanum lycopersicum HOM05D000056 ORTHO05D000019 7.0e-08 61.6 176 31.2
Haze_10059 Corylus avellana HOM05D000056 ORTHO05D000019 9.1e-08 61.2 170 30.6
TAR626G0511 Trochodendron aralioides HOM05D000056 ORTHO05D000019 9.1e-08 61.2 189 30.2
Aqoxy1G04211 Aquilegia oxysepala HOM05D000056 ORTHO05D000019 1.2e-07 60.8 180 31.1
Ciclev10015351m.g Citrus clementina HOM05D000056 ORTHO05D000019 1.2e-07 60.8 145 30.3
Haze_02799 Corylus avellana HOM05D000056 ORTHO05D000019 1.2e-07 60.8 148 31.1
Nitab4.5_0013613g0040 Nicotiana tabacum HOM05D000056 ORTHO05D000019 1.2e-07 60.8 176 33.5
CiPaw.15G180500 Carya illinoinensis HOM05D000056 ORTHO05D000019 2.0e-07 60.1 204 26.5
Haze_02791 Corylus avellana HOM05D000056 ORTHO05D000019 2.0e-07 60.1 144 31.9
Hma1.2p1_0170F.1_g075490 Hydrangea macrophylla HOM05D000056 ORTHO05D000019 2.0e-07 60.1 97 42.3
PGR042G0380 Punica granatum HOM05D000056 ORTHO05D000019 2.0e-07 60.1 132 31.1
Sopen12g033980 Solanum pennellii HOM05D000056 ORTHO05D000019 2.0e-07 60.1 176 31.2
CiPaw.15G138900 Carya illinoinensis HOM05D000056 ORTHO05D000019 2.6e-07 59.7 165 27.3
Dinv36809 Davidia involucrata HOM05D000056 ORTHO05D000019 2.6e-07 59.7 170 29.4
Potri.014G054200 Populus trichocarpa HOM05D000056 ORTHO05D000019 2.6e-07 59.7 194 28.4
Ciclev10015398m.g Citrus clementina HOM05D000056 ORTHO05D000019 3.5e-07 59.3 151 29.8
Eucgr.C00420 Eucalyptus grandis HOM05D000056 ORTHO05D000019 3.5e-07 59.3 160 26.9
Lj8C681T0 Lonicera japonica HOM05D000056 ORTHO05D000019 3.5e-07 59.3 143 30.8
Nitab4.5_0002150g0210 Nicotiana tabacum HOM05D000056 ORTHO05D000019 3.5e-07 59.3 176 32.4
PSO761G0600 Papaver somniferum HOM05D000056 ORTHO05D000019 3.5e-07 59.3 175 29.1
Potri.017G019700 Populus trichocarpa HOM05D000056 ORTHO05D000019 3.5e-07 59.3 205 27.3
Prupe.3G130500 Prunus persica HOM05D000056 ORTHO05D000019 3.5e-07 59.3 209 27.8
QL04p032778 Quercus lobata HOM05D000056 ORTHO05D000019 3.5e-07 59.3 147 33.3
Dinv15978 Davidia involucrata HOM05D000056 ORTHO05D000019 4.5e-07 58.9 200 26.5
Potri.017G019400 Populus trichocarpa HOM05D000056 ORTHO05D000019 4.5e-07 58.9 150 30.0
Aqoxy5G03446 Aquilegia oxysepala HOM05D000056 ORTHO05D000019 5.9e-07 58.5 166 28.3
EL10Ac7g17890 Beta vulgaris HOM05D000056 ORTHO05D000019 5.9e-07 58.5 135 33.3
Hma1.2p1_2648F.1_g326110 Hydrangea macrophylla HOM05D000056 ORTHO05D000019 5.9e-07 58.5 166 31.3
Lj8C645T2 Lonicera japonica HOM05D000056 ORTHO05D000019 5.9e-07 58.5 189 29.1
MD15G1081900 Malus domestica HOM05D000056 ORTHO05D000019 5.9e-07 58.5 219 26.9
Prupe.3G130000 Prunus persica HOM05D000056 ORTHO05D000019 5.9e-07 58.5 167 30.5
AUR62024893 Chenopodium quinoa HOM05D000056 ORTHO05D000019 7.7e-07 58.2 179 30.7
Haze_01691 Corylus avellana HOM05D000056 ORTHO05D000019 7.7e-07 58.2 171 31.0
FAN14G0996 Fragaria x ananassa HOM05D000056 ORTHO05D000019 7.7e-07 58.2 150 28.7
FAN14G4979 Fragaria x ananassa HOM05D000056 ORTHO05D000019 7.7e-07 58.2 150 28.7
FAN14G5882 Fragaria x ananassa HOM05D000056 ORTHO05D000019 7.7e-07 58.2 150 28.7
Lj1g0004737 Lotus japonicus HOM05D000056 ORTHO05D000019 7.7e-07 58.2 136 31.6
Cfa020882 Carpinus fangiana HOM05D000056 ORTHO05D000019 1.0e-06 57.8 172 25.6
Ciclev10011671m.g Citrus clementina HOM05D000056 ORTHO05D000019 1.0e-06 57.8 157 28.7
Nn8g41201 Nelumbo nucifera HOM05D000056 ORTHO05D000019 1.0e-06 57.8 203 27.6
QL04p032818 Quercus lobata HOM05D000056 ORTHO05D000019 1.0e-06 57.8 159 30.2
Aa31LG10G14560 Aethionema arabicum HOM05D000056 ORTHO05D000019 1.3e-06 57.4 106 34.9
CiPaw.15G180100 Carya illinoinensis HOM05D000056 ORTHO05D000019 1.3e-06 57.4 189 24.9
Eucgr.I00809 Eucalyptus grandis HOM05D000056 ORTHO05D000019 1.3e-06 57.4 165 28.5
Glyma.07G111500 Glycine max HOM05D000056 ORTHO05D000019 1.3e-06 57.4 157 26.1
Aa31LG1G26530 Aethionema arabicum HOM05D000056 ORTHO05D000019 1.7e-06 57.0 180 28.9
CiPaw.13G028300 Carya illinoinensis HOM05D000056 ORTHO05D000019 1.7e-06 57.0 143 29.4
Cc03_g08550 Coffea canephora HOM05D000056 ORTHO05D000019 1.7e-06 57.0 146 30.1
DCAR_024267 Daucus carota HOM05D000056 ORTHO05D000019 1.7e-06 57.0 163 28.8
FAN02G1430 Fragaria x ananassa HOM05D000056 ORTHO05D000019 1.7e-06 57.0 150 28.7
Peaxi162Scf00017g00085 Petunia axillaris HOM05D000056 ORTHO05D000019 1.7e-06 57.0 189 31.7
Aa31LG10G14610 Aethionema arabicum HOM05D000056 ORTHO05D000019 2.2e-06 56.6 217 24.4
CARHR170840 Cardamine hirsuta HOM05D000056 ORTHO05D000019 2.2e-06 56.6 213 25.4
Cc03_g08580 Coffea canephora HOM05D000056 ORTHO05D000019 2.2e-06 56.6 165 29.7
Eucgr.C01795 Eucalyptus grandis HOM05D000056 ORTHO05D000019 2.2e-06 56.6 146 29.5
Thhalv10024087m.g Eutrema salsugineum HOM05D000056 ORTHO05D000019 2.2e-06 56.6 181 29.3
Nn1g04741 Nelumbo nucifera HOM05D000056 ORTHO05D000019 2.2e-06 56.6 164 30.5
QL04p032535 Quercus lobata HOM05D000056 ORTHO05D000019 2.2e-06 56.6 163 30.7
RcHm_v2.0_Chr6g0267401 Rosa chinensis HOM05D000056 ORTHO05D000019 2.2e-06 56.6 143 34.3
TPR.G24956 Trifolium pratense HOM05D000056 ORTHO05D000019 2.2e-06 56.6 194 25.3
TPR.G33138 Trifolium pratense HOM05D000056 ORTHO05D000019 2.2e-06 56.6 170 29.4
TAR626G0114 Trochodendron aralioides HOM05D000056 ORTHO05D000019 2.2e-06 56.6 190 28.9
AT2G28580 Arabidopsis thaliana HOM05D000056 ORTHO05D000019 2.9e-06 56.2 186 27.4
BraA04t15882Z Brassica rapa HOM05D000056 ORTHO05D000019 2.9e-06 56.2 184 26.6
CiPaw.13G028500 Carya illinoinensis HOM05D000056 ORTHO05D000019 2.9e-06 56.2 150 32.0
CiPaw.14G022400 Carya illinoinensis HOM05D000056 ORTHO05D000019 2.9e-06 56.2 143 30.8
CDE04G0767 Ceratophyllum demersum HOM05D000056 ORTHO05D000019 2.9e-06 56.2 175 32.0
Haze_02793 Corylus avellana HOM05D000056 ORTHO05D000019 2.9e-06 56.2 142 30.3
Eucgr.C00419 Eucalyptus grandis HOM05D000056 ORTHO05D000019 2.9e-06 56.2 85 36.5
FAN26G2174 Fragaria x ananassa HOM05D000056 ORTHO05D022708 2.9e-06 56.2 169 27.2
MBI18_g42641_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 2.9e-06 56.2 165 29.7
Phvul.004G075800 Phaseolus vulgaris HOM05D000056 ORTHO05D000019 2.9e-06 56.2 159 28.3
Potri.003G209100 Populus trichocarpa HOM05D000056 ORTHO05D000019 2.9e-06 56.2 169 29.0
Potri.T012600 Populus trichocarpa HOM05D000056 ORTHO05D000019 2.9e-06 56.2 148 33.8
QL09p045377 Quercus lobata HOM05D000056 ORTHO05D000019 2.9e-06 56.2 142 32.4
Aa31LG10G14690 Aethionema arabicum HOM05D000056 ORTHO05D000019 3.8e-06 55.8 216 25.0
Ciclev10013563m.g Citrus clementina HOM05D000056 ORTHO05D000019 3.8e-06 55.8 147 29.3
Ciclev10013891m.g Citrus clementina HOM05D000056 ORTHO05D000019 3.8e-06 55.8 201 24.4
Ciclev10017781m.g Citrus clementina HOM05D000056 ORTHO05D000019 3.8e-06 55.8 106 38.7
Cc00_g26040 Coffea canephora HOM05D000056 ORTHO05D000019 3.8e-06 55.8 174 28.7
Haze_02778 Corylus avellana HOM05D000056 ORTHO05D000019 3.8e-06 55.8 117 38.5
ECA232G1259 Erigeron canadensis HOM05D000056 ORTHO05D000019 3.8e-06 55.8 184 25.0
FAN27G3224 Fragaria x ananassa HOM05D000056 ORTHO05D000019 3.8e-06 55.8 197 27.4
Hma1.2p1_0013F.1_g008630 Hydrangea macrophylla HOM05D000056 ORTHO05D000019 3.8e-06 55.8 194 27.8
Lj8C686T2 Lonicera japonica HOM05D000056 ORTHO05D000019 3.8e-06 55.8 166 30.1
MBI01_g18397_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 3.8e-06 55.8 173 28.3
RcHm_v2.0_Chr2g0153821 Rosa chinensis HOM05D000056 ORTHO05D000019 3.8e-06 55.8 150 28.0
Cfa020881 Carpinus fangiana HOM05D000056 ORTHO05D000019 5.0e-06 55.5 175 25.7
Ciclev10015342m.g Citrus clementina HOM05D000056 ORTHO05D000019 5.0e-06 55.5 201 25.9
Ciclev10018254m.g Citrus clementina HOM05D000056 ORTHO05D000019 5.0e-06 55.5 148 31.1
Haze_10053 Corylus avellana HOM05D000056 ORTHO05D000019 5.0e-06 55.5 150 30.7
Glyma.06G304100 Glycine max HOM05D000056 ORTHO05D000019 5.0e-06 55.5 185 27.0
Lj8C681T2 Lonicera japonica HOM05D000056 ORTHO05D000019 5.0e-06 55.5 167 29.3
Lj3g0006338 Lotus japonicus HOM05D000056 ORTHO05D000019 5.0e-06 55.5 145 28.3
Potri.003G206801 Populus trichocarpa HOM05D000056 ORTHO05D000019 5.0e-06 55.5 149 30.9
TPR.G24980 Trifolium pratense HOM05D000056 ORTHO05D000019 5.0e-06 55.5 144 33.3
Atru.chr2.2232 Acer truncatum HOM05D000056 ORTHO05D000019 6.5e-06 55.1 145 29.0
Actinidia14617 Actinidia chinensis HOM05D000056 ORTHO05D000019 6.5e-06 55.1 168 31.0
A05p05050 Brassica napus HOM05D000056 ORTHO05D000019 6.5e-06 55.1 183 28.4
BraA05t19479Z Brassica rapa HOM05D000056 ORTHO05D000019 6.5e-06 55.1 183 28.4
Dinv15850 Davidia involucrata HOM05D000056 ORTHO05D000019 6.5e-06 55.1 135 34.1
FvH4_4g02500 Fragaria vesca HOM05D000056 ORTHO05D000019 6.5e-06 55.1 144 30.6
FvH4_6g39730 Fragaria vesca HOM05D000056 ORTHO05D000019 6.5e-06 55.1 150 28.7
FAN12G1407 Fragaria x ananassa HOM05D000056 ORTHO05D000019 6.5e-06 55.1 144 30.6
Glyma.04G069000 Glycine max HOM05D000056 ORTHO05D000019 6.5e-06 55.1 190 27.4
Lsat_1_v5_gn_6_41601 Lactuca sativa HOM05D000056 ORTHO05D000019 6.5e-06 55.1 168 25.6
MBI19_g44908_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 6.5e-06 55.1 190 27.4
Manes.18G082800 Manihot esculenta HOM05D000056 ORTHO05D000019 6.5e-06 55.1 200 27.0
PSO675G6503 Papaver somniferum HOM05D000056 ORTHO05D000019 6.5e-06 55.1 176 26.7
TAR731G0002 Trochodendron aralioides HOM05D000056 ORTHO05D000019 6.5e-06 55.1 186 30.1
VMungo0331G1926 Vigna mungo HOM05D000056 ORTHO05D000019 6.5e-06 55.1 192 27.6
EL10Ac7g18089 Beta vulgaris HOM05D000056 ORTHO05D000019 8.5e-06 54.7 158 27.2
CiPaw.08G112300 Carya illinoinensis HOM05D000056 ORTHO05D000019 8.5e-06 54.7 166 29.5
Dinv14504 Davidia involucrata HOM05D000056 ORTHO05D000019 8.5e-06 54.7 153 26.8
Dinv29558 Davidia involucrata HOM05D000056 ORTHO05D000019 8.5e-06 54.7 186 28.5
FAN05G4219 Fragaria x ananassa HOM05D000056 ORTHO05D000019 8.5e-06 54.7 150 28.0
FAN09G0457 Fragaria x ananassa HOM05D000056 ORTHO05D000019 8.5e-06 54.7 150 28.0
Lsat_1_v5_gn_6_41541 Lactuca sativa HOM05D000056 ORTHO05D000019 8.5e-06 54.7 168 25.6
Lj8C650T1 Lonicera japonica HOM05D000056 ORTHO05D000019 8.5e-06 54.7 167 28.7
MBI18_g32017_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 8.5e-06 54.7 165 30.9
Medtr8g005225 Medicago truncatula HOM05D000056 ORTHO05D000019 8.5e-06 54.7 176 28.4
PGR102G3017 Punica granatum HOM05D000056 ORTHO05D000019 8.5e-06 54.7 155 29.0


User provided reference genes

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