Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 3658.2 1866 100.0
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3173.6 1871 86.2
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3139.7 1872 86.1
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3055.0 1870 83.1
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3050.8 1875 84.1
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3005.3 1872 82.1
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 2992.2 1913 80.4
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 2970.3 1871 81.0
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 2967.2 1871 80.8
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 2945.2 1874 80.6
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 2944.5 1870 80.4
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 2936.4 1881 80.1
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 2932.9 1870 79.9
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 2926.3 1870 80.3
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 2917.9 1871 80.3
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 2916.7 1873 79.6
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 2913.6 1870 80.5
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2913.3 1884 79.3
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 2908.2 1872 79.6
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2898.6 1885 78.8
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 2890.9 1876 79.4
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 2890.9 2194 70.7
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 2888.2 1875 78.3
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 2887.8 1871 78.6
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 2886.7 1875 78.3
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 2880.1 1899 78.4
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 2855.1 1871 77.7
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 2854.3 1871 78.1
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 2852.4 1870 77.4
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 2848.2 1870 77.2
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 2845.5 1871 77.5
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 2836.2 1876 77.8
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2834.3 1871 77.8
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 2833.1 1873 77.4
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 2819.3 1859 78.3
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 2800.8 1867 76.3
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 2798.8 1870 76.5
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 2797.7 1873 76.7
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 2796.5 1866 77.3
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 2790.4 1873 76.4
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 2763.8 1872 75.8
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 2760.3 1876 76.6
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 2759.2 1872 76.1
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 2746.5 1875 74.7
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 2736.1 1866 76.2
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 2728.7 1871 74.0
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 2706.8 1869 75.3
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 2706.4 1875 74.3
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 2704.9 1873 73.9
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2702.9 1943 71.9
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 2690.6 1873 74.2
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 2679.0 1874 73.6
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2674.4 1731 78.9
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 2637.4 1863 72.7
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2632.1 1641 81.2
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2603.2 1728 77.5
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 2585.1 1870 71.7
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 2571.6 1870 70.7
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 2568.9 1869 71.4
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2567.7 1871 71.7
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 2566.6 1869 71.2
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 2562.3 1871 71.4
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2557.7 1904 72.1
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 2554.6 1868 71.2
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 2540.8 1735 75.6
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2533.4 1878 70.3
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2528.4 1867 70.6
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2524.2 1880 69.8
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2522.3 1867 70.4
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 2509.9 1899 69.5
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 2502.2 1899 69.2
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2490.7 1879 69.3
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2437.9 1775 72.8
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2424.8 1892 68.0
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2387.1 1724 73.0
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2181.8 1695 67.6
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 1957.2 1642 63.1
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1875.9 1177 81.9
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 1856.6 1933 53.3
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 1836.2 1913 53.0
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1755.0 1145 79.3
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1709.1 1098 80.4
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1691.0 1423 65.0
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1663.7 1167 73.6
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1658.3 1161 75.6
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1643.6 1022 81.6
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1608.6 1143 74.7
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1563.1 1065 75.9
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1554.3 1870 47.8
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1449.1 1185 64.8
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1444.5 853 85.7
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1394.4 1950 43.2
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1385.2 1173 64.3
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1323.9 1944 42.3
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1266.1 744 85.5
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1254.6 900 70.4
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1095.5 672 83.5
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 4.5e-307 1058.9 958 59.5
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 7.2e-297 1025.0 609 86.0
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.1e-286 991.1 689 73.1
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.2e-283 981.1 716 70.9
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 8.3e-261 905.2 1050 50.5
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 1.9e-257 894.0 632 73.1
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.3e-207 726.5 843 53.3
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 7.6e-198 696.0 495 71.9
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 1.2e-187 662.1 489 68.3
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 3.8e-181 640.6 613 61.3
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.7e-178 629.8 385 81.3
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.3e-168 599.0 549 61.0
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 5.2e-138 497.3 460 59.1
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 1.8e-114 419.1 264 76.5
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 7.6e-113 413.7 239 90.0
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 3.8e-96 358.2 204 90.7
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 8.7e-93 347.1 180 92.2
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 3.3e-92 345.1 229 75.1
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 4.9e-88 331.3 278 66.2
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 2.1e-86 325.9 180 86.1
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 3.3e-84 318.5 218 72.5
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 4.3e-84 318.2 266 63.2
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 2.8e-75 288.9 151 94.0
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 3.8e-72 278.5 158 82.9
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 1.2e-70 273.5 313 51.8
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 4.8e-67 261.5 236 59.3
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 1.5e-55 223.4 1975 22.4
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.6e-54 219.9 338 42.3
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 4.0e-45 188.7 252 42.9
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 2.5e-39 169.5 140 62.1
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 7.2e-39 167.9 116 74.1
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 1.2e-38 167.2 140 62.9
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 1.6e-38 166.8 140 66.4
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 6.1e-38 164.9 105 78.1
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 6.8e-37 161.4 140 62.1
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 2.8e-35 156.0 116 75.0
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 7.0e-34 151.4 213 44.1
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 4.0e-29 135.6 156 48.7
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 2.2e-27 129.8 101 73.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 2.2e-27 129.8 101 73.3
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 1.1e-26 127.5 139 55.4
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 4.1e-26 125.6 117 60.7
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 2.8e-22 112.8 153 46.4
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 2.0e-20 106.7 79 69.6
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 3.4e-20 105.9 205 39.5
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 4.4e-20 105.5 129 57.4
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.1e-18 100.9 143 42.7
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 4.1e-18 99.0 123 57.7
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 1.0e-16 94.4 81 60.5
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 1.0e-16 94.4 88 56.8
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.3e-16 93.2 73 71.2
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 3.9e-16 92.4 73 69.9
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 2.1e-14 86.7 104 49.0
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 8.1e-14 84.7 67 67.2
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 8.1e-14 84.7 67 67.2
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 5.2e-13 82.0 45 86.7
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.9e-11 76.3 79 63.3
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 6.4e-11 75.1 51 74.5
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 8.3e-11 74.7 48 79.2
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 5.4e-10 72.0 105 47.6
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 1.2e-09 70.9 137 39.4
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.3e-08 67.4 74 51.4
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 1.1e-07 64.3 61 55.7


User provided reference genes

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