Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 4.6e-89 331.3 174 100.0
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 2.1e-78 295.8 200 82.5
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.5e-76 289.7 216 73.6
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 3.4e-76 288.5 216 73.1
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 7.6e-76 287.3 216 74.5
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.0e-75 287.0 214 73.4
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 1.7e-75 286.2 216 72.2
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 2.2e-75 285.8 216 72.7
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 2.9e-75 285.4 216 72.7
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 3.8e-75 285.0 216 71.3
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 3.8e-75 285.0 216 72.2
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 3.8e-75 285.0 216 72.2
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 6.5e-75 284.3 216 72.7
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 8.4e-75 283.9 216 73.1
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 8.4e-75 283.9 216 73.1
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.9e-74 282.7 216 72.7
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.9e-74 282.7 216 72.7
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.9e-74 282.7 216 72.2
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.2e-74 282.0 216 72.7
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 4.2e-74 281.6 216 72.7
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 5.5e-74 281.2 216 73.1
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 5.5e-74 281.2 216 70.8
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 7.1e-74 280.8 221 69.7
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 1.2e-73 280.0 216 71.8
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 1.6e-73 279.6 216 72.2
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.6e-73 279.6 216 71.8
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 2.1e-73 279.3 216 71.8
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.1e-73 279.3 216 71.8
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 2.7e-73 278.9 216 71.8
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 2.7e-73 278.9 216 70.8
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 2.7e-73 278.9 215 71.6
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 3.5e-73 278.5 216 71.3
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 3.5e-73 278.5 216 71.8
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 3.5e-73 278.5 216 69.4
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 4.6e-73 278.1 216 70.8
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 4.6e-73 278.1 216 70.8
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 4.6e-73 278.1 216 69.9
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 7.9e-73 277.3 216 70.8
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 7.9e-73 277.3 216 71.3
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 7.9e-73 277.3 216 70.4
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.0e-72 276.9 200 76.5
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 1.0e-72 276.9 216 70.8
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 1.3e-72 276.6 216 69.4
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.8e-72 276.2 216 71.8
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.3e-72 275.8 216 70.8
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.3e-72 275.8 200 76.0
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 2.3e-72 275.8 216 70.8
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 3.0e-72 275.4 216 69.0
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 3.0e-72 275.4 216 69.0
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 3.0e-72 275.4 216 69.9
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 3.0e-72 275.4 216 71.8
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 3.0e-72 275.4 216 70.8
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 3.0e-72 275.4 216 69.0
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 3.9e-72 275.0 216 70.8
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 3.9e-72 275.0 216 70.8
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 5.1e-72 274.6 216 70.4
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 5.1e-72 274.6 216 70.4
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 8.7e-72 273.9 216 70.8
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 8.7e-72 273.9 216 69.4
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 8.7e-72 273.9 216 71.3
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 8.7e-72 273.9 216 70.4
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 1.5e-71 273.1 216 69.4
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 1.5e-71 273.1 216 70.4
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 1.9e-71 272.7 215 70.2
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.9e-71 272.7 215 69.3
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 1.9e-71 272.7 216 69.9
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 1.9e-71 272.7 216 70.8
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 1.9e-71 272.7 216 70.8
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 1.9e-71 272.7 216 70.8
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 2.5e-71 272.3 220 70.5
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 3.3e-71 271.9 190 78.4
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 4.3e-71 271.6 216 68.1
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 5.7e-71 271.2 216 68.1
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 5.7e-71 271.2 216 68.1
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 5.7e-71 271.2 216 68.1
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 7.4e-71 270.8 216 67.6
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 7.4e-71 270.8 216 67.6
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 9.7e-71 270.4 216 68.1
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 9.7e-71 270.4 216 69.9
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 9.7e-71 270.4 216 69.4
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 1.3e-70 270.0 216 67.1
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 1.6e-70 269.6 216 69.9
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 2.2e-70 269.2 216 69.4
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 2.2e-70 269.2 216 69.0
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 2.8e-70 268.9 216 67.6
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 2.8e-70 268.9 216 70.4
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.7e-70 268.5 216 69.9
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 4.8e-70 268.1 216 70.8
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 6.3e-70 267.7 216 66.2
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 6.3e-70 267.7 200 72.0
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 8.2e-70 267.3 216 67.1
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 8.2e-70 267.3 216 69.0
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 8.2e-70 267.3 216 67.6
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 1.1e-69 266.9 216 65.7
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 1.1e-69 266.9 216 65.7
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.1e-69 266.9 216 69.4
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 1.1e-69 266.9 216 69.4
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 1.1e-69 266.9 227 67.8
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 1.8e-69 266.2 216 65.7
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 1.8e-69 266.2 216 65.7
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.1e-69 265.0 215 68.8
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 6.9e-69 264.2 216 65.3
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.2e-68 263.5 216 68.5
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 1.2e-68 263.5 216 69.0
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 1.5e-68 263.1 216 67.6
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 2.0e-68 262.7 216 66.7
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.9e-68 261.2 216 68.1
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 5.9e-68 261.2 216 68.1
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 1.0e-67 260.4 200 72.0
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.0e-67 260.4 217 67.3
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 8.5e-67 257.3 216 67.6
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 9.3e-66 253.8 221 64.7
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 2.7e-65 252.3 216 65.3
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 4.6e-65 251.5 200 71.0
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 3.0e-64 248.8 216 63.9
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 1.5e-63 246.5 216 61.1
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 1.5e-63 246.5 199 70.4
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 9.7e-63 243.8 221 63.3
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 3.1e-61 238.8 218 61.9
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 6.9e-61 237.7 200 69.0
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 9.1e-61 237.3 191 70.2
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.9e-59 232.3 216 59.7
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 6.5e-59 231.1 216 58.8
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 1.9e-58 229.6 216 61.1
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.9e-58 229.6 216 59.7
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 1.9e-58 229.6 216 61.1
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 9.4e-58 227.3 214 61.2
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 1.2e-57 226.9 216 60.6
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 1.2e-57 226.9 200 64.5
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 7.9e-57 224.2 216 59.7
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 8.8e-56 220.7 200 63.5
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.1e-55 220.3 200 62.5
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 1.7e-54 216.5 209 58.4
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 1.3e-51 206.8 165 69.1
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 3.8e-51 205.3 165 68.5
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 3.8e-51 205.3 165 67.3
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 2.1e-49 199.5 333 42.9
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 2.1e-49 199.5 276 48.2
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.8e-48 196.4 164 71.3
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.3e-48 196.1 216 54.6
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 5.7e-47 191.4 149 71.1
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 9.7e-47 190.7 201 59.7
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 1.1e-45 187.2 203 58.6
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 1.2e-39 167.2 217 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 7.5e-39 164.5 144 57.6
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.3e-37 158.3 264 44.3
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 5.0e-35 151.8 217 43.3
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 6.5e-35 151.4 80 85.0
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 5.5e-34 148.3 104 79.8
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 3.6e-33 145.6 101 80.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 3.6e-33 145.6 101 80.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 3.6e-33 145.6 101 80.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 3.6e-33 145.6 101 80.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 3.6e-33 145.6 101 80.2
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 1.8e-32 143.3 85 74.1
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 5.2e-32 141.7 88 73.9
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 5.2e-32 141.7 88 73.9
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 8.8e-32 141.0 80 75.0
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 3.1e-29 132.5 104 76.0
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 3.1e-29 132.5 233 38.2
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 7.7e-28 127.9 71 74.6
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 8.9e-24 114.4 219 34.7
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 2.0e-23 113.2 104 63.5
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 7.5e-23 111.3 213 38.5
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.0e-19 100.9 74 79.7
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.5e-18 96.3 68 80.9
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 6.0e-12 75.1 52 80.8
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 6.6e-11 71.6 39 79.5
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.1e-10 70.9 106 42.5
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 2.5e-10 69.7 39 76.9
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 9.5e-10 67.8 42 69.0
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 9.5e-10 67.8 95 45.3
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 9.5e-10 67.8 95 45.3
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 9.5e-10 67.8 95 45.3
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 3.6e-09 65.9 95 44.2


User provided reference genes

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