Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 3.1e-105 385.2 200 100.0
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 3.4e-96 355.1 200 91.0
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 5.8e-96 354.4 200 91.0
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 9.3e-94 347.1 200 87.5
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.1e-93 345.9 216 84.7
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.1e-93 345.9 216 84.7
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 2.7e-93 345.5 216 84.7
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 4.6e-93 344.7 216 84.7
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 4.6e-93 344.7 216 84.3
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 7.9e-93 344.0 216 82.9
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 1.3e-92 343.2 216 83.3
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 1.3e-92 343.2 216 83.8
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.3e-92 342.4 214 84.1
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.1e-92 341.3 216 83.8
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 5.1e-92 341.3 216 82.9
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 6.7e-92 340.9 216 82.4
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 6.7e-92 340.9 216 83.3
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 8.7e-92 340.5 216 83.8
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 8.7e-92 340.5 216 83.3
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 1.1e-91 340.1 216 82.4
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 1.1e-91 340.1 216 82.9
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 1.1e-91 340.1 216 82.9
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 1.5e-91 339.7 216 83.3
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 1.5e-91 339.7 216 83.3
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 2.5e-91 339.0 200 86.5
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.5e-91 339.0 216 83.3
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.5e-91 339.0 216 83.3
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 2.5e-91 339.0 216 82.9
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 2.5e-91 339.0 216 83.8
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 2.5e-91 339.0 216 82.9
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 3.3e-91 338.6 216 82.9
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 4.3e-91 338.2 216 82.4
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 4.3e-91 338.2 216 82.9
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 5.7e-91 337.8 215 82.8
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 7.4e-91 337.4 216 82.9
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 7.4e-91 337.4 216 82.4
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 9.7e-91 337.0 216 80.6
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 1.3e-90 336.7 221 79.6
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 2.1e-90 335.9 216 81.5
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 2.1e-90 335.9 216 81.5
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 2.8e-90 335.5 199 87.4
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 3.7e-90 335.1 216 81.0
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 3.7e-90 335.1 216 82.4
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 4.8e-90 334.7 216 80.6
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 4.8e-90 334.7 216 82.4
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 6.3e-90 334.3 216 81.5
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 8.2e-90 334.0 216 81.5
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 8.2e-90 334.0 216 81.5
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 80.1
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 80.1
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 81.5
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.4e-89 333.2 216 80.6
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 1.4e-89 333.2 216 82.4
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 1.4e-89 333.2 216 80.1
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.4e-89 333.2 216 81.0
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 2.4e-89 332.4 216 81.0
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 4.1e-89 331.6 216 82.4
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.3e-89 331.3 216 81.5
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.3e-89 331.3 216 81.5
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 6.9e-89 330.9 216 80.6
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 6.9e-89 330.9 200 85.5
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 9.0e-89 330.5 216 80.6
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 9.0e-89 330.5 216 79.6
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 1.5e-88 329.7 216 80.6
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 1.5e-88 329.7 216 80.6
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 1.5e-88 329.7 216 79.2
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 2.0e-88 329.3 216 79.2
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 2.0e-88 329.3 216 79.2
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 2.0e-88 329.3 216 79.2
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 2.0e-88 329.3 215 80.5
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 2.0e-88 329.3 216 81.5
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 2.6e-88 328.9 216 78.7
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 2.6e-88 328.9 216 78.7
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 2.6e-88 328.9 216 81.0
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 2.6e-88 328.9 220 80.9
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 3.4e-88 328.6 216 80.6
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 3.4e-88 328.6 216 79.2
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 4.5e-88 328.2 216 78.2
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 4.5e-88 328.2 216 81.0
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 5.9e-88 327.8 216 80.1
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 5.9e-88 327.8 215 80.5
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 5.9e-88 327.8 216 80.6
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 5.9e-88 327.8 216 80.1
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 7.6e-88 327.4 216 81.0
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 7.6e-88 327.4 216 80.1
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 7.6e-88 327.4 216 81.0
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 1.0e-87 327.0 216 78.7
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.3e-87 326.6 216 79.6
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 1.7e-87 326.2 216 79.2
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 2.2e-87 325.9 216 77.3
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 2.9e-87 325.5 216 79.6
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 3.8e-87 325.1 216 76.9
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 3.8e-87 325.1 216 76.9
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.8e-87 325.1 216 79.6
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 5.0e-87 324.7 216 77.8
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 6.5e-87 324.3 216 76.9
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 6.5e-87 324.3 216 76.9
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 6.5e-87 324.3 216 79.6
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 6.5e-87 324.3 216 81.5
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 8.5e-87 323.9 216 77.8
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 8.5e-87 323.9 215 78.6
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 1.1e-86 323.6 227 78.0
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 1.4e-86 323.2 216 80.1
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.4e-86 323.2 216 75.9
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.9e-86 322.8 216 79.2
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 2.5e-86 322.4 216 79.2
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 1.2e-85 320.1 216 79.6
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.6e-85 319.7 216 78.7
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 2.7e-85 318.9 200 84.0
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 1.3e-84 316.6 216 76.9
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.8e-84 316.2 217 77.4
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 3.9e-84 315.1 216 76.9
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 6.7e-84 314.3 216 78.2
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 3.3e-83 312.0 221 75.6
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 2.8e-82 308.9 221 75.1
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 1.8e-81 306.2 216 73.1
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 9.1e-81 303.9 199 81.9
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 1.5e-80 303.1 216 69.9
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 4.5e-80 301.6 200 78.0
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 1.0e-79 300.4 200 80.5
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 2.5e-78 295.8 200 77.0
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 7.2e-78 294.3 200 82.5
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 9.4e-78 293.9 200 76.5
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 2.7e-77 292.4 218 72.0
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.8e-76 289.7 216 69.4
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 3.3e-75 285.4 216 71.3
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 3.3e-75 285.4 216 71.3
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 4.4e-75 285.0 216 69.0
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 5.7e-75 284.6 216 70.8
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 5.7e-75 284.6 216 67.6
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 9.7e-75 283.9 216 70.4
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 1.7e-74 283.1 214 71.0
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 6.9e-73 277.7 164 89.6
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 8.5e-71 270.8 149 90.6
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 1.1e-70 270.4 337 50.7
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 1.4e-70 270.0 201 74.1
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 4.2e-70 268.5 165 84.2
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 7.9e-69 264.2 165 81.2
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 3.0e-68 262.3 165 82.4
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 5.2e-68 261.5 209 67.0
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 2.6e-67 259.2 276 56.5
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 3.5e-64 248.8 203 70.4
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 1.0e-63 247.3 217 62.7
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 7.5e-59 231.1 217 59.4
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 5.3e-57 224.9 144 72.9
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 1.1e-49 200.7 219 51.6
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 3.1e-49 199.1 136 80.9
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 1.8e-44 183.3 233 47.2
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 3.4e-43 179.1 135 72.6
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 1.4e-41 173.7 114 84.2
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.1e-41 172.6 268 47.4
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 2.8e-37 159.5 219 42.0
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 1.0e-36 157.5 108 69.4
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 1.0e-36 157.5 108 69.4
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 3.0e-36 156.0 213 45.5
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 5.4e-33 145.2 101 80.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 5.4e-33 145.2 101 80.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 5.4e-33 145.2 101 80.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 5.4e-33 145.2 101 80.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 5.4e-33 145.2 101 80.2
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 1.1e-28 131.0 65 90.8
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 9.8e-27 124.4 106 60.4
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 3.7e-26 122.5 65 84.6
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.4e-25 120.6 65 78.5
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 6.0e-24 115.2 64 75.0
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.5e-22 110.5 81 65.4
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.2e-19 100.9 74 79.7
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 4.4e-19 99.0 63 85.7
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.9e-18 96.3 68 80.9
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 2.9e-10 69.7 39 79.5
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 1.1e-09 67.8 39 76.9
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 2.4e-09 66.6 48 68.8
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 2.4e-09 66.6 48 68.8
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 2.4e-09 66.6 48 68.8
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 9.2e-09 64.7 48 66.7


User provided reference genes

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