Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C597G1 Lonicera japonica HOM05D002851 ORTHO05D003084 4.7e-157 557.8 271 100.0
Lj8C603G2 Lonicera japonica HOM05D002851 ORTHO05D003084 8.5e-82 307.8 323 57.3
Dinv44185 Davidia involucrata HOM05D002851 ORTHO05D003084 6.2e-40 168.7 328 39.3
Actinidia35983 Actinidia chinensis HOM05D002851 ORTHO05D003084 2.4e-36 156.8 319 37.6
PGSC0003DMG400012207 Solanum tuberosum HOM05D002851 ORTHO05D003084 1.6e-35 154.1 307 37.1
Solyc08g081080.3 Solanum lycopersicum HOM05D002851 ORTHO05D003084 2.7e-35 153.3 305 36.7
ClCG11G012820 Citrullus lanatus HOM05D002851 ORTHO05D003084 3.5e-35 152.9 219 44.7
Sopen08g029400 Solanum pennellii HOM05D002851 ORTHO05D003084 4.6e-35 152.5 308 36.4
Peaxi162Scf00126g00237 Petunia axillaris HOM05D002851 ORTHO05D003084 6.0e-35 152.1 328 35.7
CAN.G774.42 Capsicum annuum HOM05D002851 ORTHO05D003084 7.8e-35 151.8 308 36.0
Sed0007853 Sechium edule HOM05D002851 ORTHO05D003084 1.0e-34 151.4 209 45.5
Glyma.03G000100 Glycine max HOM05D002851 ORTHO05D003084 3.9e-34 149.4 219 43.8
GSVIVG01034332001 Vitis vinifera HOM05D002851 ORTHO05D003084 5.1e-34 149.1 305 38.7
DCAR_028449 Daucus carota HOM05D002851 ORTHO05D003084 6.6e-34 148.7 193 47.2
Oeu020498.1 Olea europaea HOM05D002851 ORTHO05D003084 6.6e-34 148.7 319 37.0
Ciclev10015943m.g Citrus clementina HOM05D002851 ORTHO05D003084 1.5e-33 147.5 209 44.5
FAN01G1618 Fragaria x ananassa HOM05D002851 ORTHO05D003084 1.5e-33 147.5 219 42.9
CsaV3_5G029220 Cucumis sativus L. HOM05D002851 ORTHO05D003084 1.9e-33 147.1 219 43.4
Glyma.19G000500 Glycine max HOM05D002851 ORTHO05D003084 1.9e-33 147.1 209 44.5
Ca_04128_v3 Cicer arietinum L. HOM05D002851 ORTHO05D003084 2.5e-33 146.7 193 47.7
CSS0024328 Camellia sinensis var. sinensis HOM05D002851 ORTHO05D003084 5.6e-33 145.6 319 36.4
Cc05_g01600 Coffea canephora HOM05D002851 ORTHO05D003084 5.6e-33 145.6 219 42.5
MBI06_g37979_MAGBIO Magnolia biondii HOM05D002851 ORTHO05D003084 7.3e-33 145.2 209 44.0
CSS0046292 Camellia sinensis var. sinensis HOM05D002851 ORTHO05D003084 9.5e-33 144.8 312 35.9
RcHm_v2.0_Chr4g0447251 Rosa chinensis HOM05D002851 ORTHO05D003084 9.5e-33 144.8 219 41.6
TWI53G0312 Tripterygium wilfordii HOM05D002851 ORTHO05D003084 9.5e-33 144.8 213 44.6
Lj2g0024534 Lotus japonicus HOM05D002851 ORTHO05D003084 1.6e-32 144.1 219 42.9
PSO063G6795 Papaver somniferum HOM05D002851 ORTHO05D003084 2.1e-32 143.7 219 42.9
PSO782G2630 Papaver somniferum HOM05D002851 ORTHO05D003084 2.1e-32 143.7 219 42.9
TAR371G0890 Trochodendron aralioides HOM05D002851 ORTHO05D003084 2.1e-32 143.7 219 43.4
AUR62024880 Chenopodium quinoa HOM05D002851 ORTHO05D003084 2.8e-32 143.3 209 45.9
Hma1.2p1_0886F.1_g232720 Hydrangea macrophylla HOM05D002851 ORTHO05D003084 2.8e-32 143.3 255 39.6
Eucgr.G02618 Eucalyptus grandis HOM05D002851 ORTHO05D003084 3.6e-32 142.9 209 44.0
Gorai.005G214600 Gossypium raimondii HOM05D002851 ORTHO05D003084 3.6e-32 142.9 209 42.1
Phvul.004G000700 Phaseolus vulgaris HOM05D002851 ORTHO05D003084 4.7e-32 142.5 219 41.6
Manes.14G174550 Manihot esculenta HOM05D002851 ORTHO05D003084 6.2e-32 142.1 209 43.5
AUR62030667 Chenopodium quinoa HOM05D002851 ORTHO05D003084 8.1e-32 141.7 209 45.5
Migut.G01158 Erythranthe guttata HOM05D002851 ORTHO05D003084 8.1e-32 141.7 312 34.3
MD16G1005400 Malus domestica HOM05D002851 ORTHO05D003084 8.1e-32 141.7 209 43.5
COL.COLO4_08314 Corchorus olitorius HOM05D002851 ORTHO05D003084 1.1e-31 141.4 219 41.1
FvH4_7g04330 Fragaria vesca HOM05D002851 ORTHO05D003084 1.1e-31 141.4 219 42.5
Potri.010G255300 Populus trichocarpa HOM05D002851 ORTHO05D003084 1.1e-31 141.4 220 41.8
Sabra10G0198700 Salix brachista HOM05D002851 ORTHO05D003084 1.1e-31 141.4 220 41.8
ATR0124G028 Amborella trichopoda HOM05D002851 ORTHO05D003084 1.4e-31 141.0 209 43.1
Gohir.D02G191800 Gossypium hirsutum HOM05D002851 ORTHO05D003084 1.4e-31 141.0 209 41.6
Medtr6g004030 Medicago truncatula HOM05D002851 ORTHO05D003084 1.4e-31 141.0 273 38.1
Nitab4.5_0000878g0030 Nicotiana tabacum HOM05D002851 ORTHO05D003084 2.3e-31 140.2 209 43.5
Rhsim09G0026700 Rhododendron simsii HOM05D002851 ORTHO05D003084 2.3e-31 140.2 324 35.2
SalBow6G4106 Salvia bowleyana HOM05D002851 ORTHO05D003084 2.3e-31 140.2 219 41.6
Ah.10g026180 Amaranthus hybridus HOM05D002851 ORTHO05D003084 3.1e-31 139.8 209 45.5
Thhalv10014240m.g Eutrema salsugineum HOM05D002851 ORTHO05D003084 3.1e-31 139.8 203 43.3
Aqoxy5G04226 Aquilegia oxysepala HOM05D002851 ORTHO05D003084 4.0e-31 139.4 277 37.9
SGA_v2.0_scaffold120G32962 Striga asiatica HOM05D002851 ORTHO05D003084 4.0e-31 139.4 209 43.1
RhsimUnG0195900 Rhododendron simsii HOM05D002851 ORTHO05D003084 5.2e-31 139.0 324 35.2
MSTRG.9729 Avicennia marina HOM05D002851 ORTHO05D003084 8.9e-31 138.3 330 34.5
EL10As14g24083 Beta vulgaris HOM05D002851 ORTHO05D003084 8.9e-31 138.3 209 44.0
Haze_17394 Corylus avellana HOM05D001168 ORTHO05D003084 8.9e-31 138.3 209 42.1
BraA03t09730Z Brassica rapa HOM05D002851 ORTHO05D003084 1.5e-30 137.5 296 35.5
Prupe.1G352300 Prunus persica HOM05D002851 ORTHO05D003084 1.5e-30 137.5 219 42.0
Sp6g34540 Schrenkiella parvula HOM05D002851 ORTHO05D003084 1.5e-30 137.5 302 34.8
TPR.G25240 Trifolium pratense HOM05D002851 ORTHO05D003084 1.5e-30 137.5 210 42.4
CARHR204640 Cardamine hirsuta HOM05D002851 ORTHO05D003084 2.0e-30 137.1 203 42.9
AT5G08400 Arabidopsis thaliana HOM05D002851 ORTHO05D003084 2.6e-30 136.7 209 41.1
Carub.0006s0731 Capsella rubella HOM05D002851 ORTHO05D003084 3.4e-30 136.3 209 42.1
Atru.chr11.15 Acer truncatum HOM05D002851 ORTHO05D003084 4.4e-30 136.0 270 36.3
BraA02t04956Z Brassica rapa HOM05D002851 ORTHO05D003084 4.4e-30 136.0 204 44.1
CDE04G1744 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 4.4e-30 136.0 209 41.6
Thecc.02G150700 Theobroma cacao HOM05D002851 ORTHO05D003084 5.8e-30 135.6 209 40.7
AL6G18860 Arabidopsis lyrata HOM05D002851 ORTHO05D003084 7.5e-30 135.2 209 40.7
BcaB01g05600 Brassica carinata HOM05D002851 ORTHO05D003084 9.9e-30 134.8 299 34.1
A03p03830 Brassica napus HOM05D002851 ORTHO05D003084 9.9e-30 134.8 203 43.8
THA.LOC104818388 Tarenaya hassleriana HOM05D002851 ORTHO05D003084 9.9e-30 134.8 275 37.5
PGR142G3147 Punica granatum HOM05D002851 ORTHO05D003084 2.9e-29 133.3 219 40.6
Psat1g053160 Pisum sativum HOM05D002851 ORTHO05D003084 3.7e-29 132.9 219 40.2
Zm00001eb190770 Zea mays HOM05D002851 ORTHO05D003084 3.7e-29 132.9 214 38.8
C03p04310 Brassica napus HOM05D002851 ORTHO05D003084 6.4e-29 132.1 296 34.5
BolC3t12964H Brassica oleracea HOM05D002851 ORTHO05D003084 6.4e-29 132.1 296 34.5
arahy.Tifrunner.gnm1.ann1.20K2MK Arachis hypogaea HOM05D002851 ORTHO05D003084 8.3e-29 131.7 219 39.7
arahy.Tifrunner.gnm1.ann1.AAP527 Arachis hypogaea HOM05D002851 ORTHO05D003084 8.3e-29 131.7 219 39.7
Aa31LG3G18160 Aethionema arabicum HOM05D002851 ORTHO05D003084 3.2e-28 129.8 209 40.2
Lalb_Chr03g0041051 Lupinus albus HOM05D002851 ORTHO05D003084 3.2e-28 129.8 208 39.9
Os02g0827600 Oryza sativa ssp. japonica HOM05D002851 ORTHO05D003084 3.2e-28 129.8 210 38.1
QL01p000192 Quercus lobata HOM05D002851 ORTHO05D003084 9.2e-28 128.3 223 37.7
HPP92_021120 Vanilla planifolia HOM05D002851 ORTHO05D003084 1.6e-27 127.5 219 38.4
CiPaw.15G000300 Carya illinoinensis HOM05D002851 ORTHO05D003084 1.0e-26 124.8 277 35.7
MELO3C011773.2 Cucumis melo HOM05D002851 ORTHO05D003084 5.1e-26 122.5 266 33.5
Hma1.2p1_0886F.1_g232730 Hydrangea macrophylla HOM05D002851 ORTHO05D003084 6.6e-26 122.1 153 45.8
HanXRQChr11g0343671 Helianthus annuus HOM05D002851 ORTHO05D003084 1.1e-25 121.3 209 39.7
ECA248G0144 Erigeron canadensis HOM05D002851 ORTHO05D003084 1.9e-25 120.6 209 39.7
unitig_92.g28213 Utricularia gibba HOM05D002851 ORTHO05D003084 1.9e-25 120.6 200 39.5
Lsat_1_v5_gn_1_77541 Lactuca sativa HOM05D002851 ORTHO05D003084 5.6e-25 119.0 209 39.2
Sc10g0006670 Simmondsia chinensis HOM05D002851 ORTHO05D003084 2.1e-24 117.1 151 44.4
QL05p043325 Quercus lobata HOM05D002851 ORTHO05D003084 4.7e-24 115.9 150 43.3
FAN06G1501 Fragaria x ananassa HOM05D002851 ORTHO05D003084 2.6e-22 110.2 151 41.7
AagrBONN_evm.TU.Sc2ySwM_117.863 Anthoceros agrestis HOM05D002851 ORTHO05D003084 9.9e-22 108.2 203 36.9
BcaB01g05602 Brassica carinata HOM05D002851 ORTHO05D003084 9.9e-22 108.2 148 42.6
SEGI_31354 Sequoiadendron giganteum HOM05D002851 ORTHO05D003084 1.1e-20 104.8 209 33.0
SEGI_38194 Sequoiadendron giganteum HOM05D002851 ORTHO05D003084 1.1e-20 104.8 209 33.0
Nitab4.5_0000822g0130 Nicotiana tabacum HOM05D002851 ORTHO05D003084 1.4e-20 104.4 182 41.8
Nitab4.5_0017134g0010 Nicotiana tabacum HOM05D002851 ORTHO05D003084 4.2e-20 102.8 182 42.3
Nn4g25010 Nelumbo nucifera HOM05D002851 ORTHO05D003084 1.5e-17 94.4 212 35.4
Cfa018666 Carpinus fangiana HOM05D002851 ORTHO05D003084 3.3e-17 93.2 143 37.8
Mapoly0012s0199 Marchantia polymorpha HOM05D002851 ORTHO05D003084 4.3e-17 92.8 210 31.0
Pp3c6_24940 Physcomitrium patens HOM05D002851 ORTHO05D003084 4.3e-17 92.8 203 31.5
EL10Ac2g02593 Beta vulgaris HOM05D002851 ORTHO05D003084 1.2e-16 91.3 48 89.6
SMO367G0121 Selaginella moellendorffii HOM05D002851 ORTHO05D003084 1.4e-15 87.8 206 28.6
BcaC03g13227 Brassica carinata HOM05D002851 ORTHO05D003084 3.1e-15 86.7 48 81.2
C02p03590 Brassica napus HOM05D002851 ORTHO05D003084 3.1e-15 86.7 48 81.2
BolC2t06317H Brassica oleracea HOM05D002851 ORTHO05D003084 3.1e-15 86.7 48 81.2
CANSAT78G1074 Cannabis sativa HOM05D002851 ORTHO05D003084 9.9e-14 81.6 97 49.5
Gohir.A03G168600 Gossypium hirsutum HOM05D002851 ORTHO05D003084 1.7e-13 80.9 97 48.5
Cpa.g.sc774.2 Carica papaya HOM05D002851 ORTHO05D003084 8.4e-13 78.6 97 51.5
vmacro21854 Vaccinium macrocarpon HOM05D002851 ORTHO05D003084 1.9e-12 77.4 201 33.8
vmacro21853 Vaccinium macrocarpon HOM05D002851 ORTHO05D003084 5.1e-10 69.3 34 88.2
Pp3c16_12240 Physcomitrium patens HOM05D002851 ORTHO05D003084 8.7e-10 68.6 206 25.2
CARHR237220 Cardamine hirsuta HOM05D002851 ORTHO05D003084 1.1e-09 68.2 189 25.9
Thhalv10025901m.g Eutrema salsugineum HOM05D002851 ORTHO05D003084 1.5e-09 67.8 189 25.9
AL7G23000 Arabidopsis lyrata HOM05D002851 ORTHO05D003084 2.5e-09 67.0 226 26.1
AT4G29400 Arabidopsis thaliana HOM05D002851 ORTHO05D003084 5.6e-09 65.9 230 26.5
THA.LOC104803991 Tarenaya hassleriana HOM05D002851 ORTHO05D003084 5.6e-09 65.9 213 25.4
CANSAT64G0550 Cannabis sativa HOM05D002851 ORTHO05D003084 9.6e-09 65.1 237 25.7
Sp7g27280 Schrenkiella parvula HOM05D002851 ORTHO05D003084 9.6e-09 65.1 218 25.2
EL10Ac7g15856 Beta vulgaris HOM05D002851 ORTHO05D003084 1.3e-08 64.7 190 26.3
Ca_24177_v3 Cicer arietinum L. HOM05D002851 ORTHO05D003084 1.3e-08 64.7 182 25.8
Ca_24178_v3 Cicer arietinum L. HOM05D002851 ORTHO05D003084 1.3e-08 64.7 182 25.8
FAN28G1439 Fragaria x ananassa HOM05D002851 ORTHO05D003084 1.3e-08 64.7 132 31.1
Carub.0007s1114 Capsella rubella HOM05D002851 ORTHO05D003084 1.6e-08 64.3 257 26.1
MD15G1202400 Malus domestica HOM05D002851 ORTHO05D003084 1.6e-08 64.3 251 24.3
Prupe.7G214800 Prunus persica HOM05D002851 ORTHO05D003084 1.6e-08 64.3 156 27.6
vmacro06272 Vaccinium macrocarpon HOM05D002851 ORTHO05D003084 6.2e-08 62.4 150 27.3
AUR62037484 Chenopodium quinoa HOM05D002851 ORTHO05D003084 1.4e-07 61.2 148 29.7
Actinidia39749 Actinidia chinensis HOM05D002851 ORTHO05D003084 1.8e-07 60.8 50 52.0
Aa31LG2G21030 Aethionema arabicum HOM05D002851 ORTHO05D003084 1.8e-07 60.8 189 25.4
ATR0789G028 Amborella trichopoda HOM05D002851 ORTHO05D003084 1.8e-07 60.8 50 56.0
RcHm_v2.0_Chr2g0091901 Rosa chinensis HOM05D002851 ORTHO05D003084 2.4e-07 60.5 50 56.0
RcHm_v2.0_Chr2g0092571 Rosa chinensis HOM05D002851 ORTHO05D003084 2.4e-07 60.5 50 56.0
Solyc10g045310.2 Solanum lycopersicum HOM05D002851 ORTHO05D003084 3.1e-07 60.1 50 54.0
Duzib187G0612 Durio zibethinus HOM05D002851 ORTHO05D003084 4.0e-07 59.7 221 21.7
Lj3g0007870 Lotus japonicus HOM05D002851 ORTHO05D003084 4.0e-07 59.7 50 52.0
PSO210G0738 Papaver somniferum HOM05D002851 ORTHO05D003084 4.0e-07 59.7 228 24.1
BcaC09g51725 Brassica carinata HOM05D002851 ORTHO05D003084 5.3e-07 59.3 50 52.0
A01p08630 Brassica napus HOM05D002851 ORTHO05D003084 5.3e-07 59.3 50 52.0
C01p10100 Brassica napus HOM05D002851 ORTHO05D003084 5.3e-07 59.3 50 52.0
BolC1t00968H Brassica oleracea HOM05D002851 ORTHO05D003084 5.3e-07 59.3 50 52.0
BraA01t00813Z Brassica rapa HOM05D002851 ORTHO05D003084 5.3e-07 59.3 50 52.0
PSO210G6301 Papaver somniferum HOM05D002851 ORTHO05D003084 5.3e-07 59.3 232 23.7
Psat6g101840 Pisum sativum HOM05D002851 ORTHO05D003084 5.3e-07 59.3 50 54.0
Hma1.2p1_1074F.1_g254330 Hydrangea macrophylla HOM05D002851 ORTHO05D003084 6.9e-07 58.9 50 50.0
Peaxi162Scf00078g01324 Petunia axillaris HOM05D002851 ORTHO05D003084 6.9e-07 58.9 50 50.0
Sopen10g014480 Solanum pennellii HOM05D002851 ORTHO05D003084 6.9e-07 58.9 50 52.0
PGSC0003DMG400028767 Solanum tuberosum HOM05D002851 ORTHO05D003084 6.9e-07 58.9 50 52.0
MSTRG.10584 Avicennia marina HOM05D002851 ORTHO05D003084 9.0e-07 58.5 50 50.0
Cc06_g10950 Coffea canephora HOM05D002851 ORTHO05D003084 9.0e-07 58.5 50 52.0
COL.COLO4_18243 Corchorus olitorius HOM05D002851 ORTHO05D003084 1.2e-06 58.2 50 50.0
Eucgr.C00930 Eucalyptus grandis HOM05D002851 ORTHO05D003084 1.2e-06 58.2 50 52.0
Gohir.D08G265500 Gossypium hirsutum HOM05D002851 ORTHO05D003084 1.2e-06 58.2 50 48.0
Medtr8g046180 Medicago truncatula HOM05D002851 ORTHO05D003084 1.2e-06 58.2 50 52.0
Sed0010089 Sechium edule HOM05D002851 ORTHO05D003084 1.2e-06 58.2 50 50.0
ECA234G3685 Erigeron canadensis HOM05D002851 ORTHO05D003084 1.5e-06 57.8 270 22.2
FAN23G0939 Fragaria x ananassa HOM05D002851 ORTHO05D003084 1.5e-06 57.8 50 52.0
SalBow1G1827 Salvia bowleyana HOM05D002851 ORTHO05D003084 1.5e-06 57.8 50 50.0
SalBow1G2138 Salvia bowleyana HOM05D002851 ORTHO05D003084 1.5e-06 57.8 50 50.0
ClCG03G015860 Citrullus lanatus HOM05D002851 ORTHO05D003084 2.0e-06 57.4 50 50.0
FvH4_1g06800 Fragaria vesca HOM05D002851 ORTHO05D003084 2.0e-06 57.4 50 52.0
FAN19G2701 Fragaria x ananassa HOM05D002851 ORTHO05D003084 2.0e-06 57.4 50 52.0
FAN26G1704 Fragaria x ananassa HOM05D002851 ORTHO05D003084 2.0e-06 57.4 50 52.0
CAN.G1010.14 Capsicum annuum HOM05D002851 ORTHO05D003084 2.6e-06 57.0 50 50.0
HanXRQChr12g0355311 Helianthus annuus HOM05D002851 ORTHO05D003084 3.4e-06 56.6 227 23.3
CSS0042934 Camellia sinensis var. sinensis HOM05D002851 ORTHO05D003084 4.5e-06 56.2 50 48.0
Migut.K00573 Erythranthe guttata HOM05D002851 ORTHO05D003084 4.5e-06 56.2 50 50.0
Sabra14G0112000 Salix brachista HOM05D002851 ORTHO05D003084 4.5e-06 56.2 50 50.0
Gorai.004G283500 Gossypium raimondii HOM05D002851 ORTHO05D003084 5.8e-06 55.8 50 46.0
PGR142G3716 Punica granatum HOM05D002851 ORTHO05D003084 5.8e-06 55.8 50 50.0
Thecc.09G094400 Theobroma cacao HOM05D002851 ORTHO05D003084 5.8e-06 55.8 50 48.0
FAN26G0008 Fragaria x ananassa HOM05D002851 ORTHO05D003084 7.6e-06 55.5 50 50.0
Nitab4.5_0029443g0010 Nicotiana tabacum HOM05D002851 ORTHO05D003084 7.6e-06 55.5 49 49.0
Sc18g0001770 Simmondsia chinensis HOM05D002851 ORTHO05D003084 7.6e-06 55.5 50 52.0
TAR383G0978 Trochodendron aralioides HOM05D002851 ORTHO05D003084 7.6e-06 55.5 50 48.0
CsaV3_1G040120 Cucumis sativus L. HOM05D002851 ORTHO05D003084 9.9e-06 55.1 50 48.0
Phvul.006G061200 Phaseolus vulgaris HOM05D002851 ORTHO05D003084 9.9e-06 55.1 50 50.0
Potri.014G148300 Populus trichocarpa HOM05D002851 ORTHO05D003084 9.9e-06 55.1 50 48.0
HPP92_013011 Vanilla planifolia HOM05D002851 ORTHO05D003084 9.9e-06 55.1 50 50.0


User provided reference genes

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