Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 0.0e+00 1122.5 532 100.0
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 1.1e-226 790.0 492 75.0
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.5e-223 779.6 521 72.6
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.5e-218 763.1 492 73.2
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.5e-215 753.1 481 73.6
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.5e-215 753.1 481 73.6
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 2.4e-213 745.7 496 70.6
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 4.1e-213 745.0 491 70.9
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 5.3e-213 744.6 484 73.8
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 3.5e-212 741.9 522 69.0
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 5.9e-212 741.1 452 74.3
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 7.7e-212 740.7 523 67.5
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 2.9e-211 738.8 531 67.8
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 8.5e-211 737.3 494 70.0
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 5.5e-210 734.6 526 68.6
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 7.2e-210 734.2 458 73.4
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 3.6e-209 731.9 497 69.0
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 3.6e-209 731.9 495 70.1
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 8.0e-209 730.7 467 73.0
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 1.0e-208 730.3 483 69.8
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.8e-208 729.6 540 64.4
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.8e-208 729.6 524 66.4
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 4.0e-208 728.4 500 68.8
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 6.8e-208 727.6 534 65.0
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.2e-207 726.9 488 70.5
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.0e-207 726.1 540 64.1
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 2.0e-207 726.1 491 69.7
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.4e-207 725.3 523 66.3
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 4.4e-207 724.9 492 69.3
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 7.5e-207 724.2 508 68.5
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 2.8e-206 722.2 466 72.3
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 3.7e-206 721.8 455 72.7
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 1.8e-205 719.5 534 63.7
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 3.1e-205 718.8 452 73.0
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 4.1e-205 718.4 493 69.0
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 7.0e-205 717.6 537 64.6
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 7.0e-205 717.6 447 73.2
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 9.1e-205 717.2 534 64.0
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.6e-204 716.5 580 61.6
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 2.0e-204 716.1 549 64.3
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 3.5e-204 715.3 462 71.6
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 5.9e-204 714.5 442 74.7
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 5.9e-204 714.5 443 72.7
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 1.3e-203 713.4 463 71.1
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.2e-203 712.6 534 64.0
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 2.2e-203 712.6 541 64.5
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 2.9e-203 712.2 486 67.9
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 3.8e-203 711.8 528 66.1
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 5.0e-203 711.4 472 69.7
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 1.1e-202 710.3 506 66.6
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 1.5e-202 709.9 530 63.6
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 3.2e-202 708.8 543 62.6
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 3.6e-201 705.3 448 73.0
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.7e-201 704.9 513 65.3
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 1.0e-200 703.7 461 71.4
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 2.3e-200 702.6 493 66.3
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 2.3e-200 702.6 506 66.8
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 3.0e-200 702.2 535 63.2
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 3.0e-200 702.2 446 72.2
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 3.0e-200 702.2 461 71.1
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 4.0e-200 701.8 444 71.8
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 8.8e-200 700.7 454 70.9
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 1.2e-199 700.3 469 69.9
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 1.2e-199 700.3 447 71.6
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 2.6e-199 699.1 508 64.0
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 3.4e-199 698.7 543 63.0
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.7e-198 696.4 497 67.0
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 2.2e-198 696.0 442 71.5
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 4.8e-198 694.9 531 62.9
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 4.8e-198 694.9 526 64.3
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 6.3e-198 694.5 524 63.5
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 2.4e-197 692.6 449 71.5
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 2.4e-197 692.6 512 64.3
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 5.4e-197 691.4 539 63.8
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 1.2e-196 690.3 487 66.1
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.5e-196 688.7 540 63.0
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 7.7e-196 687.6 505 63.4
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 6.6e-195 684.5 535 62.4
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 1.5e-194 683.3 506 63.0
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 1.5e-194 683.3 506 63.0
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.9e-194 682.9 494 64.0
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 5.5e-194 681.4 506 63.0
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 7.2e-194 681.0 506 63.0
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 5.2e-192 674.9 454 68.5
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 8.9e-192 674.1 494 63.6
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 8.9e-192 674.1 491 62.9
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 8.9e-192 674.1 485 66.8
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 2.7e-188 662.5 496 63.9
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 4.5e-188 661.8 444 68.5
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 7.8e-188 661.0 473 67.4
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 2.3e-187 659.4 476 65.1
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.1e-185 651.4 489 61.6
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 6.1e-185 651.4 604 55.3
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 8.9e-184 647.5 449 65.3
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 2.1e-177 626.3 439 67.0
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 2.8e-177 625.9 481 62.4
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 3.0e-171 605.9 397 70.5
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.5e-170 602.8 467 62.7
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 2.5e-170 602.8 399 70.2
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 2.5e-170 602.8 399 70.2
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 9.5e-170 600.9 400 69.5
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.3e-163 579.7 362 72.9
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 3.0e-163 579.3 399 68.4
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 8.6e-163 577.8 447 61.7
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 4.3e-162 575.5 378 70.6
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 2.6e-159 566.2 437 58.6
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 3.8e-158 562.4 444 62.2
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 1.4e-157 560.5 448 60.3
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 2.4e-157 559.7 427 64.4
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.0e-155 552.7 344 72.4
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 3.3e-154 549.3 480 55.4
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 2.1e-153 546.6 537 52.1
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 6.2e-153 545.0 445 57.1
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.2e-143 514.2 444 53.4
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 1.7e-142 510.4 445 58.4
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 1.6e-140 503.8 415 55.2
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 4.5e-135 485.7 340 64.7
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 1.3e-129 467.6 437 51.9
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 7.6e-127 458.4 286 74.1
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.1e-125 454.5 271 76.4
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 3.1e-104 383.3 216 79.6
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 1.1e-98 364.8 474 40.5
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.2e-80 302.0 184 76.1
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 3.6e-76 290.0 164 79.3
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 2.0e-66 257.7 441 37.0
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.2e-64 248.8 140 78.6
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.6e-63 246.5 470 35.7
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.2e-60 238.4 174 67.8
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 3.3e-53 213.8 131 72.5
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.4e-51 208.4 130 70.8
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.5e-47 193.7 118 72.9
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 5.2e-43 179.9 140 53.6
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 5.4e-40 169.9 112 65.2
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 7.8e-39 166.0 180 48.3
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 5.1e-38 163.3 110 66.4
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 1.1e-29 135.6 199 41.2
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.5e-17 93.2 58 67.2
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 1.6e-15 88.6 60 58.3
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.9e-06 57.4 194 29.9


User provided reference genes

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