Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C574G4 Lonicera japonica HOM05D002792 ORTHO05D003039 3.4e-68 261.5 131 100.0
Lj8A578G16 Lonicera japonica HOM05D002792 ORTHO05D003039 1.4e-53 213.0 209 60.8
Cc08_g09690 Coffea canephora HOM05D002792 ORTHO05D003039 7.6e-28 127.5 180 46.1
MELO3C003464.2 Cucumis melo HOM05D002792 ORTHO05D003039 1.7e-27 126.3 150 50.7
Dinv27907 Davidia involucrata HOM05D002792 ORTHO05D003039 1.9e-26 122.9 182 46.7
vmacro11056 Vaccinium macrocarpon HOM05D002792 ORTHO05D003039 4.6e-25 118.2 183 43.7
TAR626G1718 Trochodendron aralioides HOM05D002792 ORTHO05D003039 6.0e-25 117.9 183 43.7
Actinidia30279 Actinidia chinensis HOM05D002792 ORTHO05D003039 7.9e-25 117.5 177 42.4
GSVIVG01035616001 Vitis vinifera HOM05D002792 ORTHO05D003039 5.1e-24 114.8 177 42.9
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 6.7e-24 114.4 154 43.5
CiPaw.08G026100 Carya illinoinensis HOM05D002792 ORTHO05D003039 1.1e-23 113.6 184 44.0
Hma1.2p1_0049F.1_g028510 Hydrangea macrophylla HOM05D002792 ORTHO05D003039 1.5e-23 113.2 169 44.4
Lj1g0023402 Lotus japonicus HOM05D002792 ORTHO05D003039 1.5e-23 113.2 164 43.9
CSS0012947 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 1.9e-23 112.8 169 43.8
Rhsim02G0176900 Rhododendron simsii HOM05D002792 ORTHO05D003039 7.4e-23 110.9 200 39.0
Sopen08g020380 Solanum pennellii HOM05D002792 ORTHO05D003039 7.4e-23 110.9 168 41.1
CsaV3_3G048550 Cucumis sativus L. HOM05D002792 ORTHO05D003039 1.3e-22 110.2 176 42.6
Lalb_Chr08g0243041 Lupinus albus HOM05D002792 ORTHO05D003039 1.3e-22 110.2 176 42.0
arahy.Tifrunner.gnm1.ann1.FW97GV Arachis hypogaea HOM05D002792 ORTHO05D003039 1.6e-22 109.8 164 42.1
arahy.Tifrunner.gnm1.ann1.GFJ9I4 Arachis hypogaea HOM05D002792 ORTHO05D003039 1.6e-22 109.8 164 42.1
Sed0001182 Sechium edule HOM05D002792 ORTHO05D003039 1.6e-22 109.8 177 42.9
PGSC0003DMG400002231 Solanum tuberosum HOM05D002792 ORTHO05D003039 1.6e-22 109.8 173 39.9
Atru.chr7.2082 Acer truncatum HOM05D002792 ORTHO05D003039 2.1e-22 109.4 168 44.6
SalBow1G0964 Salvia bowleyana HOM05D002792 ORTHO05D003039 2.8e-22 109.0 179 40.8
Sc23g0005200 Simmondsia chinensis HOM05D002792 ORTHO05D003039 3.7e-22 108.6 173 41.6
Phvul.009G110200 Phaseolus vulgaris HOM05D002792 ORTHO05D003039 8.1e-22 107.5 169 42.0
Psat5g021080 Pisum sativum HOM05D002792 ORTHO05D003039 1.1e-21 107.1 170 40.6
ClCG11G015150 Citrullus lanatus HOM05D002792 ORTHO05D003039 1.4e-21 106.7 188 38.3
HanXRQChr16g0509381 Helianthus annuus HOM05D002792 ORTHO05D003039 1.4e-21 106.7 173 41.6
Medtr3g109700 Medicago truncatula HOM05D002792 ORTHO05D003039 1.8e-21 106.3 177 40.7
QL12p041309 Quercus lobata HOM05D002792 ORTHO05D003039 1.8e-21 106.3 180 41.1
Glyma.06G086200 Glycine max HOM05D002792 ORTHO05D003039 2.4e-21 105.9 165 41.8
Nitab4.5_0001515g0040 Nicotiana tabacum HOM05D002792 ORTHO05D003039 2.4e-21 105.9 179 39.1
Oeu043885.1 Olea europaea HOM05D002792 ORTHO05D003039 2.4e-21 105.9 180 42.2
Solyc08g066540.3 Solanum lycopersicum HOM05D002792 ORTHO05D003039 3.1e-21 105.5 165 40.0
Lsat_1_v5_gn_5_33680 Lactuca sativa HOM05D002792 ORTHO05D003039 5.3e-21 104.8 172 41.9
Nitab4.5_0003794g0060 Nicotiana tabacum HOM05D002792 ORTHO05D003039 5.3e-21 104.8 178 38.2
Peaxi162Scf00227g00109 Petunia axillaris HOM05D002792 ORTHO05D003039 5.3e-21 104.8 177 41.2
CANSAT25G1031 Cannabis sativa HOM05D002792 ORTHO05D003039 9.0e-21 104.0 179 40.2
CAN.G400.15 Capsicum annuum HOM05D002792 ORTHO05D003039 1.2e-20 103.6 171 39.8
Potri.006G237900 Populus trichocarpa HOM05D002792 ORTHO05D003039 1.2e-20 103.6 174 40.2
Migut.E01530 Erythranthe guttata HOM05D002792 ORTHO05D003039 1.5e-20 103.2 164 43.3
Eucgr.C00554 Eucalyptus grandis HOM05D002792 ORTHO05D003039 1.5e-20 103.2 163 41.1
Prupe.1G447600 Prunus persica HOM05D002792 ORTHO05D003039 1.5e-20 103.2 178 37.1
Ciclev10009570m.g Citrus clementina HOM05D002792 ORTHO05D003039 2.6e-20 102.4 168 44.0
Hund19508 Selenicereus undatus HOM05D002792 ORTHO05D003039 3.4e-20 102.1 164 41.5
Manes.03G059000 Manihot esculenta HOM05D002792 ORTHO05D003039 4.5e-20 101.7 179 42.5
Nn2g11610 Nelumbo nucifera HOM05D002792 ORTHO05D003039 4.5e-20 101.7 177 40.1
Thecc.09G045800 Theobroma cacao HOM05D002792 ORTHO05D003039 4.5e-20 101.7 170 40.6
TWI34G0935 Tripterygium wilfordii HOM05D002792 ORTHO05D003039 4.5e-20 101.7 179 39.7
Eucgr.C00600 Eucalyptus grandis HOM05D002792 ORTHO05D003039 5.8e-20 101.3 163 40.5
MD15G1092700 Malus domestica HOM05D002792 ORTHO05D003039 5.8e-20 101.3 171 38.6
EL10Ac2g04008 Beta vulgaris HOM05D002792 ORTHO05D003039 7.6e-20 100.9 172 38.4
RcHm_v2.0_Chr6g0306411 Rosa chinensis HOM05D002792 ORTHO05D003039 1.0e-19 100.5 174 39.1
TPR.G15097 Trifolium pratense HOM05D002792 ORTHO05D003039 1.3e-19 100.1 159 42.1
FvH4_2g35470 Fragaria vesca HOM05D002792 ORTHO05D003039 1.7e-19 99.8 180 37.2
PSO210G0529 Papaver somniferum HOM05D002792 ORTHO05D003039 2.2e-19 99.4 185 38.4
FAN15G1596 Fragaria x ananassa HOM05D002792 ORTHO05D003039 2.9e-19 99.0 164 39.0
PSO210G7550 Papaver somniferum HOM05D002792 ORTHO05D003039 2.9e-19 99.0 185 38.4
THA.LOC104803806 Tarenaya hassleriana HOM05D002792 ORTHO05D003039 2.9e-19 99.0 168 40.5
Sabra06G0186200 Salix brachista HOM05D002792 ORTHO05D003039 8.4e-19 97.4 187 37.4
ATR0705G086 Amborella trichopoda HOM05D002792 ORTHO05D003039 3.2e-18 95.5 174 35.6
AUR62042437 Chenopodium quinoa HOM05D002792 ORTHO05D003039 4.2e-18 95.1 131 43.5
Gorai.009G049500 Gossypium raimondii HOM05D002792 ORTHO05D003039 7.1e-18 94.4 169 39.1
Thhalv10027598m.g Eutrema salsugineum HOM05D002792 ORTHO05D003039 9.3e-18 94.0 173 38.7
AUR62009270 Chenopodium quinoa HOM05D002792 ORTHO05D003039 1.6e-17 93.2 130 43.1
BcaC09g52089 Brassica carinata HOM05D002792 ORTHO05D003039 7.9e-17 90.9 173 36.4
Sp7g30670 Schrenkiella parvula HOM05D002792 ORTHO05D003039 7.9e-17 90.9 173 36.4
A01p05380 Brassica napus HOM05D002792 ORTHO05D003039 1.0e-16 90.5 173 35.8
C01p05800 Brassica napus HOM05D002792 ORTHO05D003039 1.0e-16 90.5 173 35.8
BraA01t00512Z Brassica rapa HOM05D002792 ORTHO05D003039 1.0e-16 90.5 173 35.8
ECA246G3749 Erigeron canadensis HOM05D002792 ORTHO05D003039 2.3e-16 89.4 180 38.3
BolC1t00560H Brassica oleracea HOM05D002792 ORTHO05D003039 3.0e-16 89.0 173 35.3
Carub.0007s0759 Capsella rubella HOM05D002792 ORTHO05D003039 3.0e-16 89.0 173 36.4
AT4G32900 Arabidopsis thaliana HOM05D002792 ORTHO05D003039 5.1e-16 88.2 168 36.3
Eucgr.C02937 Eucalyptus grandis HOM05D002792 ORTHO05D003039 5.1e-16 88.2 164 34.1
unitig_37.g12923 Utricularia gibba HOM05D002792 ORTHO05D003039 6.7e-16 87.8 150 41.3
Aa31sc131G50 Aethionema arabicum HOM05D002792 ORTHO05D003039 1.9e-15 86.3 173 33.5
AL7G18810 Arabidopsis lyrata HOM05D002792 ORTHO05D003039 2.5e-15 85.9 168 35.1
COL.COLO4_20975 Corchorus olitorius HOM05D002792 ORTHO05D003039 2.5e-15 85.9 49 83.7
Ah.09g228070 Amaranthus hybridus HOM05D002792 ORTHO05D003039 3.3e-15 85.5 163 37.4
Os05g0520200 Oryza sativa ssp. japonica HOM05D002792 ORTHO05D003039 3.7e-14 82.0 178 34.3
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 1.8e-13 79.7 147 36.1
HPP92_006373 Vanilla planifolia HOM05D000103 ORTHO05D000049 1.8e-13 79.7 178 32.6
Glyma.14G143300 Glycine max HOM05D002792 ORTHO05D003039 9.0e-13 77.4 153 36.6
CSS0002691 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 3.4e-12 75.5 51 72.5
CSS0011685 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 3.4e-12 75.5 51 72.5
CSS0034746 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 3.4e-12 75.5 51 72.5
CSS0039761 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 3.4e-12 75.5 51 72.5
CSS0043613 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 3.4e-12 75.5 51 72.5
CSS0048808 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 1.0e-11 73.9 51 68.6
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 2.2e-11 72.8 75 57.3
SGA_v2.0_scaffold163G38071 Striga asiatica HOM05D002792 ORTHO05D003039 2.2e-11 72.8 75 58.7
CSS0021625 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 2.9e-11 72.4 51 70.6
CSS0027278 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 5.0e-11 71.6 51 70.6
CSS0041878 Camellia sinensis var. sinensis HOM05D002792 ORTHO05D003039 5.0e-11 71.6 51 70.6
Cpa.g.sc78.6 Carica papaya HOM05D002792 ORTHO05D003039 5.0e-11 71.6 83 54.2
Aqoxy7G03895 Aquilegia oxysepala HOM05D002792 ORTHO05D003039 6.5e-11 71.2 172 32.0
Gohir.A05G046500 Gossypium hirsutum HOM05D002792 ORTHO05D003039 7.2e-10 67.8 75 53.3
CDE05G0140 Ceratophyllum demersum HOM05D002792 ORTHO05D003039 9.3e-10 67.4 165 30.3
Gohir.D05G048200 Gossypium hirsutum HOM05D002792 ORTHO05D003039 9.3e-10 67.4 75 53.3
PGR031G0555 Punica granatum HOM05D002792 ORTHO05D003039 2.1e-09 66.2 156 33.3
Glyma.04G084600 Glycine max HOM05D002792 ORTHO05D003039 2.7e-09 65.9 48 58.3
SEGI_08017 Sequoiadendron giganteum HOM05D002792 ORTHO05D003039 4.6e-09 65.1 159 31.4
Haze_21894 Corylus avellana HOM05D002792 ORTHO05D003039 7.9e-09 64.3 87 44.8
CDE05G0915 Ceratophyllum demersum HOM05D002792 ORTHO05D003039 1.3e-08 63.5 39 82.1
MBI01_g42892_MAGBIO Magnolia biondii HOM05D002792 ORTHO05D003039 1.5e-07 60.1 96 46.9
CBR_g468 Chara braunii HOM05D000019 ORTHO05D000353 3.3e-07 58.9 39 66.7
SMO230G0072 Selaginella moellendorffii HOM05D002792 ORTHO05D003039 4.3e-07 58.5 75 46.7
SMO367G0393 Selaginella moellendorffii HOM05D002792 ORTHO05D003039 4.3e-07 58.5 75 46.7
Mapoly0110s0033 Marchantia polymorpha HOM05D002792 ORTHO05D003039 1.3e-06 57.0 39 71.8
Pp3c6_14950 Physcomitrium patens HOM05D002792 ORTHO05D003039 1.6e-06 56.6 77 44.2


User provided reference genes

Program Settings