Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 0.0e+00 1197.2 596 100.0
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.4e-262 909.4 599 76.3
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 5.0e-260 901.0 598 75.6
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.4e-241 839.7 674 65.9
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 1.2e-240 836.6 596 70.6
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 6.6e-236 820.8 600 69.0
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 1.5e-235 819.7 596 68.6
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 5.2e-233 811.2 594 69.0
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 5.2e-233 811.2 633 66.7
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 6.8e-233 810.8 599 68.3
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 1.5e-232 809.7 604 69.5
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 7.5e-232 807.4 605 68.6
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.7e-231 806.2 599 67.9
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 2.2e-231 805.8 596 68.5
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.1e-230 803.5 596 67.3
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.4e-230 802.4 596 67.6
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 3.2e-230 802.0 598 68.7
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 1.2e-229 800.0 668 62.4
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 4.6e-229 798.1 601 67.4
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 5.0e-228 794.7 597 67.2
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 1.5e-227 793.1 600 66.7
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 9.5e-227 790.4 598 66.1
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 9.5e-227 790.4 599 67.1
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 1.6e-226 789.6 602 65.8
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 2.1e-226 789.3 599 67.3
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 8.0e-226 787.3 599 67.1
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 8.9e-225 783.9 599 66.6
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 8.9e-225 783.9 594 66.3
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 8.9e-225 783.9 600 67.2
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 2.6e-224 782.3 601 65.6
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 4.4e-224 781.6 595 65.2
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 7.5e-224 780.8 607 64.9
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 2.2e-223 779.2 601 65.7
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 2.9e-223 778.9 598 67.2
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 3.7e-223 778.5 599 66.4
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 8.3e-223 777.3 596 65.3
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 1.1e-222 776.9 597 66.0
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.4e-222 776.5 601 65.1
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 1.4e-222 776.5 596 64.9
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 7.0e-222 774.2 626 64.5
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 9.2e-222 773.9 600 65.5
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 1.2e-221 773.5 601 64.7
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 2.1e-221 772.7 597 65.0
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 2.7e-221 772.3 597 65.8
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 5.1e-220 768.1 598 65.7
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 1.4e-217 760.0 598 65.4
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 1.8e-217 759.6 594 65.3
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 1.2e-216 756.9 599 63.8
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 1.5e-216 756.5 597 65.2
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 2.6e-216 755.7 632 61.2
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 3.4e-216 755.4 598 63.9
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 1.3e-215 753.4 600 64.3
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 1.4e-214 750.0 597 63.7
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 1.2e-213 746.9 600 63.8
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 1.6e-213 746.5 597 64.7
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 4.6e-213 745.0 599 63.4
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 6.0e-213 744.6 599 63.6
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 7.8e-213 744.2 599 63.1
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 6.8e-209 731.1 594 63.0
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 6.8e-209 731.1 539 70.1
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 3.4e-208 728.8 606 59.7
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 5.8e-208 728.0 596 62.8
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 1.3e-207 726.9 604 62.4
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 6.4e-207 724.5 597 63.0
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 6.4e-207 724.5 613 60.4
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 1.9e-206 723.0 619 60.3
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 3.2e-206 722.2 603 61.7
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 5.4e-206 721.5 606 59.1
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 9.2e-206 720.7 600 60.2
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 1.0e-204 717.2 596 62.1
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 1.3e-204 716.8 607 62.6
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 1.7e-204 716.5 597 60.5
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 6.6e-204 714.5 599 60.6
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 8.7e-204 714.1 597 62.0
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 3.3e-203 712.2 596 61.7
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 7.3e-203 711.1 606 60.4
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 4.7e-202 708.4 581 64.9
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.1e-201 707.2 596 60.9
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 1.7e-199 699.9 593 61.7
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 7.8e-197 691.0 561 62.2
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 5.1e-196 688.3 598 58.7
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.1e-195 687.2 560 62.9
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.1e-193 680.6 596 58.6
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 5.3e-193 678.3 598 58.4
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 9.0e-193 677.6 596 58.2
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 3.4e-192 675.6 597 58.3
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 3.4e-192 675.6 601 57.9
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 7.6e-192 674.5 598 58.0
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 7.6e-192 674.5 598 58.0
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 9.9e-192 674.1 558 62.2
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 2.9e-191 672.5 601 57.9
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 1.4e-190 670.2 597 57.8
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 5.4e-190 668.3 597 57.8
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 6.7e-188 661.4 508 66.7
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 1.3e-183 647.1 602 57.0
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 4.2e-182 642.1 597 55.6
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 1.2e-181 640.6 597 56.1
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 3.5e-181 639.0 601 54.6
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 8.2e-178 627.9 604 54.5
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 1.3e-172 610.5 605 53.1
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 4.3e-171 605.5 420 74.3
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 5.1e-164 582.0 603 52.1
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 2.8e-162 576.2 442 66.5
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-161 573.2 525 57.9
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 5.3e-161 572.0 593 50.8
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 2.0e-160 570.1 528 56.6
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 2.9e-159 566.2 623 50.6
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 1.4e-158 563.9 528 56.6
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 3.2e-158 562.8 600 48.5
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 8.5e-151 538.1 470 60.9
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 1.6e-141 507.3 551 51.5
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.7e-130 470.7 577 45.4
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 9.1e-129 464.9 605 42.0
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 1.4e-124 451.1 396 58.1
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 7.8e-120 435.3 595 42.7
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 1.1e-118 431.4 607 39.5
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 8.9e-116 421.8 280 75.4
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 3.9e-111 406.4 590 41.9
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 4.0e-108 396.4 314 66.9
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 6.4e-106 389.0 305 61.6
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 9.2e-105 385.2 624 37.7
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 1.6e-101 374.4 249 73.1
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 4.7e-101 372.9 418 51.4
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 4.6e-80 303.1 612 32.5
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 7.3e-78 295.8 429 43.6
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 8.1e-77 292.4 468 40.8
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.8e-76 291.2 249 60.6
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 4.6e-64 250.0 289 51.6
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 4.8e-61 240.0 284 48.9
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 4.3e-54 216.9 605 30.2
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 1.3e-53 215.3 167 62.3
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 5.3e-52 209.9 131 71.0
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 2.1e-48 198.0 290 42.4
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 1.7e-45 188.3 157 57.3
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 2.0e-38 164.9 134 58.2
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 9.7e-38 162.5 128 62.5
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 2.4e-36 157.9 391 31.2
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 1.0e-31 142.5 116 60.3
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.5e-30 138.7 133 46.6
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 6.3e-29 133.3 865 22.3
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 7.7e-27 126.3 94 61.7
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.8e-21 107.8 81 65.4
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 3.7e-21 107.5 89 55.1
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 4.2e-17 94.0 108 46.3
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.6e-16 90.9 88 47.7
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 6.3e-13 80.1 55 61.8
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.8e-12 78.6 108 41.7
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 6.6e-10 70.1 42 76.2
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 6.6e-10 70.1 42 76.2
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 8.6e-10 69.7 110 40.9
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 8.6e-10 69.7 110 40.9
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 2.5e-09 68.2 41 75.6
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 4.3e-09 67.4 41 75.6
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 1.8e-07 62.0 57 52.6


User provided reference genes

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