Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 3774.9 1891 100.0
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2790.8 1894 75.2
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2655.2 1822 74.5
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2540.4 1896 68.3
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2514.6 1926 68.2
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2505.7 1899 67.8
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2473.7 1904 67.0
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2457.6 1964 65.5
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2449.5 1912 67.2
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2445.6 1902 66.2
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2433.3 1898 66.0
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2417.1 1894 65.8
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2407.5 1961 63.8
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2399.4 1900 65.2
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2387.1 1894 65.4
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 2385.5 1944 65.0
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2369.0 1903 64.0
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2368.2 1897 65.0
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2349.3 1893 64.0
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2346.6 1920 64.4
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2346.6 1897 64.7
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2344.7 1895 64.7
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2339.3 1909 63.4
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2335.8 1895 64.3
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2329.3 1903 63.9
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2315.0 1900 63.3
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2304.6 1895 63.4
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2299.2 1901 63.4
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2293.8 1894 63.7
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2271.5 1880 63.5
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2257.3 1896 61.9
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2255.3 1889 63.3
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2251.5 1896 62.3
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 2251.1 1897 63.2
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2238.8 1908 62.1
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2237.6 1897 62.4
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2236.5 1912 61.5
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 2235.7 1895 62.5
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2234.5 1895 61.4
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2229.9 1893 61.4
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2229.9 1898 60.9
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2228.0 1885 61.2
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2225.7 1939 60.7
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2223.7 1895 61.0
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2209.5 1903 61.0
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2206.8 1895 60.6
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 2201.8 1895 60.7
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2200.2 1895 60.4
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2188.7 1924 60.2
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2183.7 1978 59.6
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2177.9 1889 60.7
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 2177.9 1895 60.6
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2166.7 1889 60.1
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2158.3 1969 58.6
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2155.9 1962 58.9
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2151.3 1903 59.6
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 2151.3 1890 60.7
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 2145.2 1921 60.3
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2144.4 1912 59.6
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2123.2 1913 59.4
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2099.3 2030 56.3
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2087.8 1767 61.9
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 2083.1 1889 58.2
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2081.2 1892 59.4
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 2057.0 1885 58.8
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2045.0 2036 54.6
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 2042.3 1889 57.4
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 2040.8 1887 57.1
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2040.4 1867 58.3
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 2038.5 1886 57.6
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 2033.5 1888 57.3
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2030.4 1893 59.7
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 2018.4 1892 57.1
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 2012.3 1889 57.3
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2006.5 1885 56.7
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1996.1 1893 56.6
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1978.0 1917 56.3
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1975.3 1922 55.8
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1970.7 1768 58.5
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1960.3 1904 55.6
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1944.1 1900 55.1
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1820.4 2061 49.9
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1812.7 1543 62.5
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1663.7 1611 56.0
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1622.1 1901 49.7
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1574.3 1350 62.1
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1557.7 1782 49.4
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1504.6 1037 74.0
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1258.0 2148 37.7
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1207.6 1942 38.6
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1174.1 2181 35.5
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1112.1 799 72.3
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1090.1 2077 35.1
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 2.1e-267 927.2 798 62.8
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 8.1e-264 915.2 1395 41.8
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 6.7e-258 895.6 805 61.9
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 1.1e-239 835.1 671 63.6
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 6.9e-239 832.4 2081 31.2
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 1.8e-226 791.2 1141 41.9
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 2.1e-203 714.5 737 54.1
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 1.3e-181 642.1 790 48.5
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 1.8e-178 631.7 719 50.5
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 2.7e-150 538.1 364 72.8
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 2.5e-148 531.6 360 71.9
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 3.2e-87 328.6 494 42.3
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 9.4e-87 327.0 201 79.1
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 4.2e-79 301.6 214 71.0
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 3.4e-68 265.4 229 60.3
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 4.4e-68 265.0 295 51.9
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 4.1e-66 258.5 278 51.1
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 4.1e-66 258.5 254 52.4
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 1.5e-55 223.4 124 87.9
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 8.1e-38 164.5 201 43.3
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 3.1e-37 162.5 243 42.8
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 5.4e-34 151.8 127 56.7
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 7.3e-31 141.4 147 51.0
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 2.1e-30 139.8 80 85.0
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 3.7e-22 112.5 118 55.9
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 1.4e-21 110.5 91 58.2
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 1.0e-16 94.4 68 64.7
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 1.5e-15 90.5 61 68.9
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 9.6e-15 87.8 241 28.6
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 1.6e-14 87.0 74 60.8
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.8e-13 83.6 69 52.2
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 5.5e-10 72.0 66 47.0
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 3.5e-09 69.3 71 52.1
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 1.1e-07 64.3 71 53.5
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 1.5e-07 63.9 94 39.4
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 3.3e-07 62.8 82 41.5
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 8.2e-06 58.2 98 30.6


User provided reference genes

Program Settings