Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C54T21 Lonicera japonica HOM05D003400 ORTHO05D003687 5.4e-223 777.3 390 100.0
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 9.6e-119 431.0 476 57.1
Actinidia13648 Actinidia chinensis HOM05D003400 ORTHO05D003687 9.3e-114 414.5 386 61.1
Lj1C967G2 Lonicera japonica HOM05D003400 ORTHO05D003687 2.1e-113 413.3 388 62.9
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 4.3e-111 405.6 408 60.3
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.0e-108 396.7 378 60.3
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 8.4e-107 391.3 428 55.4
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.1e-106 391.0 374 61.2
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 1.0e-104 384.4 375 58.4
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 1.3e-104 384.0 383 57.4
Dinv34484 Davidia involucrata HOM05D003400 ORTHO05D003687 1.1e-103 380.9 410 55.1
TAR623G0519 Trochodendron aralioides HOM05D003400 ORTHO05D003687 4.8e-102 375.6 404 54.5
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 8.1e-102 374.8 413 52.8
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 3.1e-101 372.9 395 55.4
Hma1.2p1_0292F.1_g115970 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 1.2e-100 370.9 354 59.9
TAR633G0453 Trochodendron aralioides HOM05D003400 ORTHO05D003687 1.5e-100 370.5 389 55.3
Nitab4.5_0002745g0010 Nicotiana tabacum HOM05D003400 ORTHO05D003687 4.5e-100 369.0 401 53.9
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 4.5e-100 369.0 412 52.7
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 4.9e-99 365.5 412 52.2
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 4.9e-99 365.5 394 54.3
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 5.5e-98 362.1 375 56.8
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 9.3e-98 361.3 409 52.6
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 6.0e-97 358.6 384 53.1
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 7.9e-97 358.2 391 55.8
CAN.G24.15 Capsicum annuum HOM05D003400 ORTHO05D003687 1.0e-96 357.8 410 51.5
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 1.8e-96 357.1 405 53.8
Rhsim03G0152100 Rhododendron simsii HOM05D003400 ORTHO05D003687 2.3e-96 356.7 391 55.8
Haze_17357 Corylus avellana HOM05D003400 ORTHO05D003687 3.0e-96 356.3 386 56.5
Nitab4.5_0000171g0020 Nicotiana tabacum HOM05D003400 ORTHO05D003687 6.7e-96 355.1 399 52.1
Oeu063984.1 Olea europaea HOM05D003400 ORTHO05D003687 9.6e-95 351.3 377 53.6
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 3.7e-94 349.4 382 53.1
Manes.10G001400 Manihot esculenta HOM05D003400 ORTHO05D003687 3.7e-94 349.4 393 53.4
Eucgr.J00113 Eucalyptus grandis HOM05D003400 ORTHO05D003687 3.4e-92 342.8 375 52.8
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 6.5e-91 338.6 389 53.2
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 8.4e-91 338.2 419 47.0
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 1.9e-90 337.0 394 52.3
Manes.07G143400 Manihot esculenta HOM05D003400 ORTHO05D003687 4.2e-90 335.9 377 53.6
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 1.2e-89 334.3 411 48.9
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 1.6e-89 334.0 390 52.8
Lj1g0015659 Lotus japonicus HOM05D003400 ORTHO05D003687 3.5e-89 332.8 412 49.5
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 4.6e-89 332.4 423 50.1
CiPaw.01G306600 Carya illinoinensis HOM05D003400 ORTHO05D003687 1.8e-88 330.5 373 55.2
Manes.07G141701 Manihot esculenta HOM05D003400 ORTHO05D003687 1.8e-88 330.5 377 52.8
Duzib114G0186 Durio zibethinus HOM05D003400 ORTHO05D003687 3.9e-88 329.3 432 48.8
Prupe.2G264100 Prunus persica HOM05D003400 ORTHO05D003687 3.9e-88 329.3 370 53.2
Gorai.012G014800 Gossypium raimondii HOM05D003400 ORTHO05D003687 8.7e-88 328.2 424 49.8
Lsat_1_v5_gn_9_60041 Lactuca sativa HOM05D003400 ORTHO05D003687 1.5e-87 327.4 365 54.2
Gohir.D04G012500 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.9e-87 327.0 424 49.8
QL08p064852 Quercus lobata HOM05D003400 ORTHO05D003687 2.5e-87 326.6 378 54.5
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 5.7e-87 325.5 391 50.4
Psat6g036400 Pisum sativum HOM05D003400 ORTHO05D003687 5.7e-87 325.5 382 51.0
MD01G1167700 Malus domestica HOM05D003400 ORTHO05D003687 7.4e-87 325.1 371 51.8
Cpa.g.sc19.58 Carica papaya HOM05D003400 ORTHO05D003687 1.6e-86 323.9 388 50.8
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 4.8e-86 322.4 424 46.7
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 6.3e-86 322.0 362 51.9
TWI53G0017 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 8.2e-86 321.6 389 49.4
MD07G1233700 Malus domestica HOM05D003400 ORTHO05D003687 3.1e-85 319.7 352 51.1
arahy.Tifrunner.gnm1.ann1.JMN63H Arachis hypogaea HOM05D003400 ORTHO05D003687 4.1e-85 319.3 372 50.8
arahy.Tifrunner.gnm1.ann1.45IBUQ Arachis hypogaea HOM05D003400 ORTHO05D003687 6.9e-85 318.5 372 50.5
Duzib106G2049 Durio zibethinus HOM05D003400 ORTHO05D003687 6.9e-85 318.5 429 48.5
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 2.6e-84 316.6 380 49.2
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 3.4e-84 316.2 377 51.5
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 5.9e-84 315.5 391 50.4
Gohir.D05G280400 Gossypium hirsutum HOM05D003400 ORTHO05D003687 7.7e-84 315.1 364 50.8
vmacro06891 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 7.7e-84 315.1 392 51.0
Lalb_Chr24g0402681 Lupinus albus HOM05D003400 ORTHO05D003687 1.7e-83 313.9 391 49.1
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 1.7e-83 313.9 360 52.5
TWI09G1099 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 1.7e-83 313.9 391 50.9
CANSAT21G0473 Cannabis sativa HOM05D003400 ORTHO05D003687 1.1e-82 311.2 377 51.2
Gorai.009G293800 Gossypium raimondii HOM05D003400 ORTHO05D003687 1.1e-82 311.2 367 51.0
CANSAT21G1871 Cannabis sativa HOM05D003400 ORTHO05D003687 1.4e-82 310.8 359 53.2
ECA232G0413 Erigeron canadensis HOM05D003400 ORTHO05D003687 1.4e-82 310.8 362 53.0
VMungo0647G2516 Vigna mungo HOM05D003400 ORTHO05D003687 1.4e-82 310.8 378 48.9
DCAR_018037 Daucus carota HOM05D003400 ORTHO05D003687 1.9e-82 310.5 370 51.4
EL10Ac2g02645 Beta vulgaris HOM05D003400 ORTHO05D003687 3.2e-82 309.7 415 46.7
PSO170G4360 Papaver somniferum HOM05D003400 ORTHO05D003687 3.2e-82 309.7 351 52.4
Ca_03351_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 7.2e-82 308.5 390 47.7
AUR62024934 Chenopodium quinoa HOM05D003400 ORTHO05D003687 2.7e-81 306.6 372 51.1
Ciclev10030981m.g Citrus clementina HOM05D003400 ORTHO05D003687 2.7e-81 306.6 413 47.9
PSO017G2438 Papaver somniferum HOM05D003400 ORTHO05D003687 2.7e-81 306.6 375 49.6
Phvul.001G062900 Phaseolus vulgaris HOM05D003400 ORTHO05D003687 3.6e-81 306.2 375 49.6
AUR62030610 Chenopodium quinoa HOM05D003400 ORTHO05D003687 6.1e-81 305.4 371 50.9
Glyma.17G191500 Glycine max HOM05D003400 ORTHO05D003687 6.1e-81 305.4 389 48.6
Migut.F00607 Erythranthe guttata HOM05D003400 ORTHO05D003687 1.4e-80 304.3 370 51.6
Hund13449 Selenicereus undatus HOM05D003400 ORTHO05D003687 1.4e-80 304.3 422 46.0
MSTRG.171 Avicennia marina HOM05D003400 ORTHO05D003687 1.8e-80 303.9 366 51.4
Glyma.14G117500 Glycine max HOM05D003400 ORTHO05D003687 3.0e-80 303.1 390 48.5
SGA_v2.0_scaffold44G16620 Striga asiatica HOM05D003400 ORTHO05D003687 5.1e-80 302.4 369 51.5
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 1.1e-79 301.2 413 45.5
PGR044G0713 Punica granatum HOM05D003400 ORTHO05D003687 2.0e-79 300.4 364 52.2
SalBow3G2848 Salvia bowleyana HOM05D003400 ORTHO05D003687 2.0e-79 300.4 409 48.7
HanXRQChr08g0221571 Helianthus annuus HOM05D003400 ORTHO05D003687 9.7e-79 298.1 356 51.4
Lalb_Chr22g0360931 Lupinus albus HOM05D003400 ORTHO05D003687 2.8e-78 296.6 391 48.3
Medtr1g007460 Medicago truncatula HOM05D003400 ORTHO05D003687 3.7e-78 296.2 383 47.8
MBI15_g01598_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 1.2e-76 291.2 369 50.9
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 1.5e-76 290.8 392 48.5
Hund15817 Selenicereus undatus HOM05D003400 ORTHO05D003687 3.8e-75 286.2 367 47.1
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 5.0e-75 285.8 415 44.8
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 5.0e-75 285.8 415 44.8
EL10Ac3g07235 Beta vulgaris HOM05D003400 ORTHO05D003687 6.5e-75 285.4 449 43.9
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 6.5e-75 285.4 417 44.4
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.1e-74 284.6 412 45.4
FAN10G0615 Fragaria x ananassa HOM05D003400 ORTHO05D003687 2.7e-73 280.0 413 44.8
Sed0014609 Sechium edule HOM05D003400 ORTHO05D003687 7.9e-73 278.5 431 42.5
Ca_12768_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 2.0e-68 263.8 386 43.8
Gohir.A05G278600 Gossypium hirsutum HOM05D003400 ORTHO05D003687 2.2e-67 260.4 306 51.0
Zm00001eb231310 Zea mays HOM05D003400 ORTHO05D003687 2.9e-67 260.0 351 46.2
Potri.013G091100 Populus trichocarpa HOM05D003400 ORTHO05D003687 6.5e-67 258.8 376 46.5
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 1.1e-66 258.1 375 44.5
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 5.5e-66 255.8 374 44.7
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 9.4e-66 255.0 373 46.6
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 1.2e-65 254.6 368 48.1
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 4.0e-64 249.6 344 45.9
DCAR_020152 Daucus carota HOM05D003400 ORTHO05D003687 8.8e-64 248.4 354 43.5
Migut.F01244 Erythranthe guttata HOM05D003400 ORTHO05D003687 2.6e-63 246.9 311 50.8
Lsat_1_v5_gn_8_11440 Lactuca sativa HOM05D003400 ORTHO05D003687 5.7e-63 245.7 363 45.5
PSO384G0897 Papaver somniferum HOM05D003400 ORTHO05D003687 5.7e-63 245.7 364 45.3
PSO339G6613 Papaver somniferum HOM05D003400 ORTHO05D003687 7.0e-61 238.8 362 44.2
ECA233G0468 Erigeron canadensis HOM05D003400 ORTHO05D003687 9.1e-61 238.4 365 43.0
Thhalv10013224m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 5.0e-59 232.6 337 43.6
Carub.0006s0417 Capsella rubella HOM05D003400 ORTHO05D003687 1.6e-57 227.6 358 43.6
C09p71460 Brassica napus HOM05D003400 ORTHO05D003687 8.0e-57 225.3 357 44.3
BolC9t59909H Brassica oleracea HOM05D003400 ORTHO05D003687 8.0e-57 225.3 357 44.3
AT5G05240 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 3.0e-56 223.4 363 41.9
A10p30950 Brassica napus HOM05D003400 ORTHO05D003687 8.8e-56 221.9 393 42.5
BraA10t45140Z Brassica rapa HOM05D003400 ORTHO05D003687 8.8e-56 221.9 393 42.5
CARHR207990 Cardamine hirsuta HOM05D003400 ORTHO05D003687 1.2e-55 221.5 390 39.2
Sp6g37590 Schrenkiella parvula HOM05D003400 ORTHO05D003687 1.2e-55 221.5 341 44.6
BcaB05g21725 Brassica carinata HOM05D003400 ORTHO05D003687 6.3e-54 215.7 380 41.3
TAR636G0727 Trochodendron aralioides HOM05D003400 ORTHO05D003687 6.3e-54 215.7 286 50.3
Aa31LG11G6090 Aethionema arabicum HOM05D003400 ORTHO05D003687 5.4e-53 212.6 387 38.8
Oeu006054.1 Olea europaea HOM05D003400 ORTHO05D003687 7.0e-53 212.2 308 44.8
AL6G15080 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 5.9e-52 209.1 376 39.4
HPP92_024977 Vanilla planifolia HOM05D003400 ORTHO05D003687 7.7e-52 208.8 382 37.2
BcaC06g32233 Brassica carinata HOM05D003400 ORTHO05D003687 6.5e-51 205.7 319 43.9
BcaC03g13153 Brassica carinata HOM05D003400 ORTHO05D003687 2.5e-50 203.8 333 42.6
BolC2t06192H Brassica oleracea HOM05D003400 ORTHO05D003687 4.2e-50 203.0 333 42.0
Sc14g0005640 Simmondsia chinensis HOM05D003400 ORTHO05D003687 3.6e-49 199.9 288 45.1
C02p02230 Brassica napus HOM05D003400 ORTHO05D003687 4.0e-48 196.4 333 41.4
Actinidia01001 Actinidia chinensis HOM05D003400 ORTHO05D003687 5.2e-48 196.1 221 56.1
BraA02t04839Z Brassica rapa HOM05D003400 ORTHO05D003687 2.0e-47 194.1 339 40.7
CiPaw.13G063500 Carya illinoinensis HOM05D003400 ORTHO05D003687 7.0e-45 185.7 336 40.5
Aa31LG3G1490 Aethionema arabicum HOM05D003400 ORTHO05D003687 2.9e-43 180.3 360 37.8
MSTRG.8378 Avicennia marina HOM05D003400 ORTHO05D003687 1.5e-42 177.9 295 44.4
Actinidia01000 Actinidia chinensis HOM05D003400 ORTHO05D003687 3.3e-42 176.8 122 68.9
AT2G40630 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 7.3e-42 175.6 335 39.1
QL01p024561 Quercus lobata HOM05D003400 ORTHO05D003687 9.5e-42 175.3 362 37.3
Aqoxy2G00693 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 1.6e-41 174.5 321 38.3
THA.LOC104813796 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 1.8e-40 171.0 452 33.0
ATR1127G045 Amborella trichopoda HOM05D003400 ORTHO05D003687 5.2e-40 169.5 352 39.2
AL4G38500 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 5.2e-40 169.5 425 34.1
A03p22840 Brassica napus HOM05D003400 ORTHO05D003687 6.8e-40 169.1 357 37.3
C03p27090 Brassica napus HOM05D003400 ORTHO05D003687 1.2e-39 168.3 356 37.4
Haze_24472 Corylus avellana HOM05D003400 ORTHO05D003687 1.2e-39 168.3 328 39.0
Carub.0004s2292 Capsella rubella HOM05D003400 ORTHO05D003687 2.6e-39 167.2 337 37.1
Thhalv10016481m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 2.6e-39 167.2 330 37.3
BcaC01g05391 Brassica carinata HOM05D003400 ORTHO05D003687 3.4e-39 166.8 356 37.1
Sp4g22960 Schrenkiella parvula HOM05D003400 ORTHO05D003687 1.3e-38 164.9 329 38.3
unitig_37.g12474 Utricularia gibba HOM05D003400 ORTHO05D003687 4.9e-38 162.9 276 40.9
BcaB01g03526 Brassica carinata HOM05D003400 ORTHO05D003687 5.2e-32 142.9 343 34.7
HanXRQChr09g0252221 Helianthus annuus HOM05D003400 ORTHO05D003687 2.6e-31 140.6 155 54.2
BraA03t11508Z Brassica rapa HOM05D003400 ORTHO05D003687 1.9e-29 134.4 357 33.6
BcaC06g32234 Brassica carinata HOM05D003400 ORTHO05D003687 5.4e-29 132.9 147 52.4
Zm00001eb209040 Zea mays HOM05D003400 ORTHO05D003687 1.1e-26 125.2 137 51.1
BcaC02g07326 Brassica carinata HOM05D003400 ORTHO05D003687 1.8e-24 117.9 325 29.8
BcaB06g29158 Brassica carinata HOM05D003400 ORTHO05D003687 5.2e-24 116.3 300 31.0
BolC4t28345H Brassica oleracea HOM05D003400 ORTHO05D003687 1.2e-23 115.2 325 29.2
TAR636G2149 Trochodendron aralioides HOM05D003400 ORTHO05D003687 1.2e-23 115.2 93 62.4
Potri.013G157700 Populus trichocarpa HOM05D003400 ORTHO05D003687 1.5e-23 114.8 293 33.1
A04p31060 Brassica napus HOM05D003400 ORTHO05D003687 2.6e-23 114.0 309 29.8
BraA04t18562Z Brassica rapa HOM05D003400 ORTHO05D003687 2.2e-22 110.9 298 30.2
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 4.9e-22 109.8 321 30.8
Sabra13G0126600 Salix brachista HOM05D003400 ORTHO05D003687 1.1e-16 92.0 295 31.2
CARHR135740 Cardamine hirsuta HOM05D003400 ORTHO05D003687 1.8e-16 91.3 148 39.9
C04p68450 Brassica napus HOM05D003400 ORTHO05D003687 5.2e-16 89.7 294 27.2
unitig_46.g18748 Utricularia gibba HOM05D003400 ORTHO05D003687 5.2e-16 89.7 183 33.9
Duzib128G1678 Durio zibethinus HOM05D003400 ORTHO05D003687 2.6e-15 87.4 94 51.1
Actinidia33868 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.1e-13 82.0 80 60.0
HanXRQChr09g0252231 Helianthus annuus HOM05D003400 ORTHO05D003687 1.6e-12 78.2 101 47.5
HanXRQChr09g0240401 Helianthus annuus HOM05D003400 ORTHO05D003687 3.1e-08 63.9 75 48.0
HanXRQChr09g0253941 Helianthus annuus HOM05D003400 ORTHO05D003687 3.1e-08 63.9 75 48.0
SpUn1366_0010 Schrenkiella parvula HOM05D003400 ORTHO05D003687 8.9e-08 62.4 74 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4066 Anthoceros agrestis HOM05D003400 ORTHO05D003687 2.6e-07 60.8 301 26.6
Mapoly0081s0073 Marchantia polymorpha HOM05D003400 ORTHO05D003687 4.9e-06 56.6 357 23.8
MSTRG.20929 Avicennia marina HOM05D003400 ORTHO05D003687 8.4e-06 55.8 57 47.4
Pp3c27_4350 Physcomitrium patens HOM05D027247 ORTHO05D003687 8.4e-06 55.8 138 37.0


User provided reference genes

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