Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C411T12 Lonicera japonica HOM05D032877 ORTHO05D000421 8.2e-197 690.3 363 100.0
Lj1A14T72 Lonicera japonica HOM05D000621 ORTHO05D000421 2.3e-90 336.7 281 70.5
Lj1A335T67 Lonicera japonica HOM05D000621 ORTHO05D000421 6.9e-71 271.9 247 68.4
Dinv33142 Davidia involucrata HOM05D000621 ORTHO05D000421 5.3e-55 219.2 396 38.9
Dinv10127 Davidia involucrata HOM05D000324 ORTHO05D001014 3.8e-53 213.0 393 40.5
Lj1A14T71 Lonicera japonica HOM05D032877 ORTHO05D234900 3.2e-52 209.9 114 95.6
Hma1.2p1_0965F.1_g242100 Hydrangea macrophylla HOM05D000621 ORTHO05D000421 3.9e-50 203.0 394 40.6
CSS0010554 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 2.5e-44 183.7 406 38.7
Actinidia31344 Actinidia chinensis HOM05D000621 ORTHO05D000421 2.9e-37 160.2 413 34.1
Cc01_g21650 Coffea canephora HOM05D000621 ORTHO05D000421 8.0e-35 152.1 404 32.4
GSVIVG01028157001 Vitis vinifera HOM05D000621 ORTHO05D000421 8.8e-34 148.7 397 32.7
Lj1A335T68 Lonicera japonica HOM05D032877 ORTHO05D235686 2.0e-33 147.5 77 97.4
Actinidia20974 Actinidia chinensis HOM05D000621 ORTHO05D000421 1.1e-31 141.7 282 35.8
Actinidia20973 Actinidia chinensis HOM05D000621 ORTHO05D000421 3.8e-29 133.3 225 41.8
Lj2A1210T30 Lonicera japonica HOM05D000621 ORTHO05D000421 1.1e-28 131.7 284 36.6
CAN.G293.6 Capsicum annuum HOM05D000621 ORTHO05D000421 7.2e-28 129.0 371 31.5
HanXRQChr06g0168081 Helianthus annuus HOM05D000621 ORTHO05D000421 7.2e-28 129.0 301 36.9
Oeu056549.1 Olea europaea HOM05D000621 ORTHO05D000421 9.5e-28 128.6 402 29.4
ECA236G2303 Erigeron canadensis HOM05D000621 ORTHO05D000421 3.6e-27 126.7 405 30.9
Oeu048873.1 Olea europaea HOM05D000621 ORTHO05D000421 4.7e-27 126.3 413 29.3
PGSC0003DMG400009053 Solanum tuberosum HOM05D000621 ORTHO05D000421 4.7e-27 126.3 307 32.6
Oeu038046.1 Olea europaea HOM05D000621 ORTHO05D000421 6.1e-27 125.9 397 29.5
Solyc01g079230.4 Solanum lycopersicum HOM05D000621 ORTHO05D000421 1.4e-26 124.8 307 32.2
Sopen01g031010 Solanum pennellii HOM05D000621 ORTHO05D000421 1.8e-26 124.4 307 32.2
DCAR_002907 Daucus carota HOM05D000621 ORTHO05D000421 8.9e-26 122.1 314 33.4
Oeu008487.1 Olea europaea HOM05D000621 ORTHO05D000421 8.9e-26 122.1 394 27.4
Nitab4.5_0007983g0010 Nicotiana tabacum HOM05D000621 ORTHO05D000421 2.0e-25 120.9 348 32.5
Nitab4.5_0000222g0110 Nicotiana tabacum HOM05D000621 ORTHO05D000421 9.8e-25 118.6 348 31.6
SGA_v2.0_scaffold334G49092 Striga asiatica HOM05D000621 ORTHO05D000421 7.0e-23 112.5 337 31.5
SGA_v2.0_scaffold376G50304 Striga asiatica HOM05D000621 ORTHO05D000421 2.0e-22 110.9 388 27.8
DCAR_005738 Daucus carota HOM05D000621 ORTHO05D000421 2.7e-22 110.5 368 31.0
CSS0001187 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 1.3e-21 108.2 358 30.2
HanXRQChr15g0465111 Helianthus annuus HOM05D000621 ORTHO05D000421 1.7e-21 107.8 334 31.7
Haze_05080 Corylus avellana HOM05D000621 ORTHO05D000421 1.6e-19 101.3 250 31.6
Lsat_1_v5_gn_8_76680 Lactuca sativa HOM05D000621 ORTHO05D000421 1.6e-19 101.3 218 34.9
Cfa005755 Carpinus fangiana HOM05D000621 ORTHO05D000421 1.0e-18 98.6 354 27.1
Hund09661 Selenicereus undatus HOM05D000621 ORTHO05D000421 1.0e-18 98.6 282 28.0
Rhsim02G0162900 Rhododendron simsii HOM05D000621 ORTHO05D000421 1.4e-18 98.2 140 44.3
Sabra02G0163600 Salix brachista HOM05D000621 ORTHO05D000421 1.4e-18 98.2 282 30.1
MSTRG.18079 Avicennia marina HOM05D000621 ORTHO05D000421 2.3e-18 97.4 308 28.2
Peaxi162Scf00770g00127 Petunia axillaris HOM05D000621 ORTHO05D000421 2.3e-18 97.4 253 31.2
Potri.002G192300 Populus trichocarpa HOM05D000621 ORTHO05D000421 5.2e-18 96.3 373 27.1
RcHm_v2.0_Chr1g0373061 Rosa chinensis HOM05D000621 ORTHO05D000421 5.2e-18 96.3 140 46.4
Thecc.04G160500 Theobroma cacao HOM05D000621 ORTHO05D000421 6.8e-18 95.9 140 39.3
vmacro16895 Vaccinium macrocarpon HOM05D000621 ORTHO05D000421 6.8e-18 95.9 140 42.1
Prupe.2G061500 Prunus persica HOM05D000621 ORTHO05D000421 1.5e-17 94.7 160 40.6
Prupe.2G061600 Prunus persica HOM05D000621 ORTHO05D000421 2.0e-17 94.4 275 30.2
MD17G1278800 Malus domestica HOM05D000621 ORTHO05D000421 1.7e-16 91.3 248 29.8
FAN06G4464 Fragaria x ananassa HOM05D000621 ORTHO05D000421 4.9e-16 89.7 136 41.2
FAN26G2638 Fragaria x ananassa HOM05D000621 ORTHO05D000421 4.9e-16 89.7 246 29.3
Potri.014G117800 Populus trichocarpa HOM05D000621 ORTHO05D000421 4.9e-16 89.7 290 27.9
FAN23G0943 Fragaria x ananassa HOM05D000621 ORTHO05D000421 8.3e-16 89.0 246 28.9
Manes.09G186900 Manihot esculenta HOM05D000621 ORTHO05D000421 8.3e-16 89.0 153 35.9
Prupe.3G007100 Prunus persica HOM05D000621 ORTHO05D000421 8.3e-16 89.0 279 26.5
AUR62011757 Chenopodium quinoa HOM05D000621 ORTHO05D000421 1.1e-15 88.6 374 23.5
Manes.01G230800 Manihot esculenta HOM05D000621 ORTHO05D000421 1.4e-15 88.2 277 27.8
EL10As5g23608 Beta vulgaris HOM05D000621 ORTHO05D000421 2.4e-15 87.4 137 38.0
FvH4_7g26480 Fragaria vesca HOM05D000621 ORTHO05D000421 4.1e-15 86.7 231 31.2
FvH4_1g26800 Fragaria vesca HOM05D000621 ORTHO05D000421 5.4e-15 86.3 381 26.2
RcHm_v2.0_Chr1g0373071 Rosa chinensis HOM05D000621 ORTHO05D000421 5.4e-15 86.3 298 29.9
Lsat_1_v5_gn_8_167620 Lactuca sativa HOM05D000621 ORTHO05D000421 7.0e-15 85.9 311 30.2
FAN06G4196 Fragaria x ananassa HOM05D000621 ORTHO05D000421 1.2e-14 85.1 231 31.2
Lsat_1_v5_gn_0_17081 Lactuca sativa HOM05D000621 ORTHO05D000421 1.6e-14 84.7 129 41.1
Nitab4.5_0004104g0100 Nicotiana tabacum HOM05D000621 ORTHO05D000421 4.6e-14 83.2 219 30.6
CANSAT64G2764 Cannabis sativa HOM05D000621 ORTHO05D000421 6.0e-14 82.8 309 28.5
Lj1A564T29 Lonicera japonica HOM05D000621 ORTHO05D000421 6.0e-14 82.8 138 39.9
FAN28G1859 Fragaria x ananassa HOM05D000621 ORTHO05D000421 7.8e-14 82.4 346 26.3
HanXRQChr04g0106261 Helianthus annuus HOM05D000621 ORTHO05D000421 1.0e-13 82.0 139 40.3
FAN19G2659 Fragaria x ananassa HOM05D000621 ORTHO05D000421 1.7e-13 81.3 346 26.0
Atru.chr5.946 Acer truncatum HOM05D000621 ORTHO05D000421 3.0e-13 80.5 250 27.2
Ah.11g049120 Amaranthus hybridus HOM05D000621 ORTHO05D000421 3.0e-13 80.5 402 25.6
ECA247G0073 Erigeron canadensis HOM05D000621 ORTHO05D000421 3.0e-13 80.5 336 29.8
MD09G1286400 Malus domestica HOM05D000621 ORTHO05D000421 3.0e-13 80.5 364 25.5
Ciclev10018775m.g Citrus clementina HOM05D000621 ORTHO05D000421 6.6e-13 79.3 278 27.7
Atru.chr1.3085 Acer truncatum HOM05D000621 ORTHO05D000421 2.5e-12 77.4 145 37.9
Lj4C478T4 Lonicera japonica HOM05D000621 ORTHO05D000421 2.5e-12 77.4 138 36.2
Thecc.01G318600 Theobroma cacao HOM05D000621 ORTHO05D000421 3.3e-12 77.0 415 25.5
CiPaw.08G086900 Carya illinoinensis HOM05D000621 ORTHO05D000421 4.3e-12 76.6 251 27.1
Atru.chr5.3214 Acer truncatum HOM05D000621 ORTHO05D000421 5.6e-12 76.3 147 36.1
Actinidia33024 Actinidia chinensis HOM05D000621 ORTHO05D000421 7.3e-12 75.9 338 26.3
Lj4A474T13 Lonicera japonica HOM05D000621 ORTHO05D000421 7.3e-12 75.9 138 35.5
Sed0018754 Sechium edule HOM05D000621 ORTHO05D000421 1.2e-11 75.1 257 28.0
Cpa.g.c32331 Carica papaya HOM05D000621 ORTHO05D000421 1.6e-11 74.7 250 26.8
Actinidia31382 Actinidia chinensis HOM05D000621 ORTHO05D000421 2.8e-11 73.9 265 26.4
FAN03G3413 Fragaria x ananassa HOM05D000621 ORTHO05D000421 2.8e-11 73.9 125 37.6
Atru.chr12.1845 Acer truncatum HOM05D000621 ORTHO05D000421 8.0e-11 72.4 150 35.3
Duzib211G0322 Durio zibethinus HOM05D000621 ORTHO05D000421 1.4e-10 71.6 250 27.6
Migut.E00558 Erythranthe guttata HOM05D000621 ORTHO05D000421 1.4e-10 71.6 399 24.1
SalBow3G2875 Salvia bowleyana HOM05D000621 ORTHO05D000421 1.4e-10 71.6 131 35.1
DCAR_007129 Daucus carota HOM05D000621 ORTHO05D000421 2.3e-10 70.9 137 32.1
Sed0001192 Sechium edule HOM05D000621 ORTHO05D000421 3.1e-10 70.5 261 26.4
Aqoxy2G02645 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 4.0e-10 70.1 146 27.4
Os01g0556800 Oryza sativa ssp. japonica HOM05D000621 ORTHO05D000421 5.2e-10 69.7 133 33.8
Aqoxy2G02637 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 6.8e-10 69.3 139 31.7
Eucgr.H00912 Eucalyptus grandis HOM05D000621 ORTHO05D000421 6.8e-10 69.3 221 28.1
AUR62024603 Chenopodium quinoa HOM05D000621 ORTHO05D000421 8.9e-10 68.9 374 22.5
Nitab4.5_0004105g0010 Nicotiana tabacum HOM05D000621 ORTHO05D000421 8.9e-10 68.9 166 30.7
MBI19_g03282_MAGBIO Magnolia biondii HOM05D000621 ORTHO05D000421 1.2e-09 68.6 141 33.3
MD07G1240300 Malus domestica HOM05D000621 ORTHO05D000421 1.5e-09 68.2 128 35.9
Duzib133G0686 Durio zibethinus HOM05D000621 ORTHO05D000421 2.0e-09 67.8 415 24.3
Gohir.D08G141200 Gossypium hirsutum HOM05D000621 ORTHO05D000421 2.0e-09 67.8 371 24.8
DCAR_023932 Daucus carota HOM05D000621 ORTHO05D000421 3.4e-09 67.0 139 34.5
Gorai.004G145200 Gossypium raimondii HOM05D000621 ORTHO05D000421 3.4e-09 67.0 375 24.0
MD01G1173400 Malus domestica HOM05D000621 ORTHO05D000421 3.4e-09 67.0 271 24.7
Atru.chr5.395 Acer truncatum HOM05D000621 ORTHO05D000421 4.4e-09 66.6 147 32.7
CiPaw.07G120400 Carya illinoinensis HOM05D000621 ORTHO05D000421 7.5e-09 65.9 312 27.9
Lj2A613T7 Lonicera japonica HOM05D000621 ORTHO05D000421 1.3e-08 65.1 138 36.2
HanXRQChr14g0449571 Helianthus annuus HOM05D000621 ORTHO05D000421 2.2e-08 64.3 134 32.1
Atru.chr12.1843 Acer truncatum HOM05D000621 ORTHO05D000421 2.9e-08 63.9 150 30.7
Ah.11g049100 Amaranthus hybridus HOM05D000621 ORTHO05D000421 2.9e-08 63.9 140 29.3
Aqoxy2G02649 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 2.9e-08 63.9 371 25.9
Aqoxy2G02639 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 3.7e-08 63.5 138 31.9
AT2G47230 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 3.7e-08 63.5 325 26.5
Aqoxy2G02650 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 4.9e-08 63.2 147 30.6
unitig_0.g288 Utricularia gibba HOM05D000621 ORTHO05D000421 4.9e-08 63.2 277 23.1
BcaB02g08793 Brassica carinata HOM05D000621 ORTHO05D000421 1.1e-07 62.0 137 27.0
THA.LOC104817448 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 1.1e-07 62.0 139 31.7
TWI14G0775 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 1.1e-07 62.0 139 31.7
PGR142G0834 Punica granatum HOM05D000621 ORTHO05D000421 1.4e-07 61.6 131 33.6
QL12p018838 Quercus lobata HOM05D000621 ORTHO05D000421 1.9e-07 61.2 133 33.1
Duzib138G1699 Durio zibethinus HOM05D000621 ORTHO05D000421 4.1e-07 60.1 249 24.1
RcHm_v2.0_Chr3g0487021 Rosa chinensis HOM05D000621 ORTHO05D000421 4.1e-07 60.1 246 24.4
Thhalv10020194m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 9.2e-07 58.9 140 29.3
TWI59G0701 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 1.2e-06 58.5 391 23.0
Aqoxy1G01444 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 1.6e-06 58.2 283 24.0
AL4G46780 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 1.6e-06 58.2 329 25.2
BraA09t40842Z Brassica rapa HOM05D000621 ORTHO05D000421 1.6e-06 58.2 141 28.4
HanXRQChr10g0284791 Helianthus annuus HOM05D000621 ORTHO05D000421 1.6e-06 58.2 140 35.7
BcaC07g40715 Brassica carinata HOM05D000621 ORTHO05D000421 2.1e-06 57.8 140 29.3
BolC8t51295H Brassica oleracea HOM05D000621 ORTHO05D000421 2.1e-06 57.8 140 29.3
DCAR_028263 Daucus carota HOM05D000621 ORTHO05D000421 2.1e-06 57.8 133 32.3
HanXRQChr17g0537251 Helianthus annuus HOM05D000621 ORTHO05D000421 2.1e-06 57.8 143 32.2
C08p37180 Brassica napus HOM05D000621 ORTHO05D000421 2.7e-06 57.4 140 27.9
AL5G45060 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 3.5e-06 57.0 137 29.9
ECA248G2920 Erigeron canadensis HOM05D000621 ORTHO05D000421 3.5e-06 57.0 144 31.9
HanXRQChr17g0537241 Helianthus annuus HOM05D000621 ORTHO05D000421 4.6e-06 56.6 144 32.6
PGR031G1982 Punica granatum HOM05D000621 ORTHO05D000421 4.6e-06 56.6 108 39.8
Aqoxy1G01445 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 6.0e-06 56.2 137 27.7
Ah.11g049110 Amaranthus hybridus HOM05D000621 ORTHO05D000421 7.8e-06 55.8 120 29.2
Carub.0004s2996 Capsella rubella HOM05D000621 ORTHO05D000421 7.8e-06 55.8 390 22.3
DCAR_011628 Daucus carota HOM05D000621 ORTHO05D000421 7.8e-06 55.8 235 26.0
Nitab4.5_0010788g0040 Nicotiana tabacum HOM05D000621 ORTHO05D000421 7.8e-06 55.8 145 31.7


User provided reference genes

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