Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 0.0e+00 1743.4 849 100.0
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 7.0e-308 1060.4 831 64.1
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 4.3e-281 971.5 816 60.5
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 8.1e-280 967.2 831 60.0
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 5.5e-244 848.2 821 53.1
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 9.3e-244 847.4 693 60.8
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 6.0e-243 844.7 825 53.7
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 4.8e-240 835.1 830 53.5
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.6e-238 829.3 827 51.9
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.4e-238 828.9 831 52.6
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 7.7e-238 827.8 827 52.0
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 7.2e-236 821.2 827 52.4
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 1.0e-234 817.4 827 50.7
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 8.8e-234 814.3 832 52.6
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 1.1e-233 813.9 828 52.1
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 1.7e-232 810.1 737 56.4
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 1.1e-231 807.4 823 50.7
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 4.1e-231 805.4 824 52.1
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 2.6e-230 802.7 827 51.9
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 7.7e-230 801.2 819 49.9
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 2.5e-228 796.2 820 50.5
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 5.5e-228 795.0 825 51.2
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 4.7e-227 792.0 818 51.1
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.4e-223 780.4 818 49.9
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 1.8e-223 780.0 815 51.5
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 1.5e-222 776.9 818 49.6
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 3.8e-221 772.3 816 49.6
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 5.0e-221 771.9 818 49.9
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 8.5e-221 771.2 836 49.6
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 5.9e-214 748.4 814 49.1
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 1.5e-212 743.8 874 48.1
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.0e-210 737.6 833 49.2
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 3.0e-210 736.1 833 48.0
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 1.3e-205 720.7 843 48.6
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 3.2e-204 716.1 826 46.6
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 4.7e-203 712.2 823 47.5
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 9.8e-201 704.5 818 47.9
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.7e-200 703.7 811 46.7
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 3.7e-200 702.6 817 47.0
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 4.8e-200 702.2 827 46.2
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.1e-199 701.0 633 54.3
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 1.8e-199 700.3 797 49.7
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 2.0e-198 696.8 832 46.9
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 3.5e-198 696.0 828 46.1
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 1.0e-197 694.5 829 46.3
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 8.0e-195 684.9 828 44.9
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 1.4e-194 684.1 831 44.8
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 6.8e-194 681.8 797 47.9
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 3.4e-193 679.5 818 46.8
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 4.4e-193 679.1 836 44.9
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 5.7e-193 678.7 827 46.7
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 2.8e-192 676.4 858 45.5
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 2.4e-191 673.3 820 45.2
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 3.1e-191 672.9 820 48.3
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 4.1e-191 672.5 795 45.3
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 1.3e-189 667.5 824 44.4
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 1.7e-189 667.2 829 45.1
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 2.9e-189 666.4 821 45.3
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 4.3e-188 662.5 828 44.4
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 9.5e-188 661.4 832 46.6
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 3.6e-187 659.4 832 46.6
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 4.7e-187 659.1 841 45.3
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 6.1e-187 658.7 836 43.8
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.4e-183 646.7 847 45.9
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 3.0e-181 639.8 818 42.5
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 4.3e-180 636.0 842 45.7
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 1.6e-179 634.0 800 44.8
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.1e-179 633.6 845 44.7
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.4e-178 630.9 742 47.8
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 3.1e-178 629.8 864 43.4
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 6.8e-178 628.6 823 42.9
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.2e-171 607.8 846 42.0
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 2.3e-165 587.0 691 45.6
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 4.7e-163 579.3 818 42.9
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 6.2e-163 578.9 851 40.9
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 1.3e-160 571.2 797 41.8
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 2.4e-159 567.0 790 41.8
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 3.2e-151 540.0 813 40.2
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 2.1e-150 537.3 813 40.0
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 2.3e-149 533.9 812 39.8
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 1.9e-148 530.8 787 40.7
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 2.5e-148 530.4 782 40.8
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.5e-145 521.2 758 41.2
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 1.3e-144 518.1 789 39.2
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 2.2e-144 517.3 817 39.4
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 6.4e-144 515.8 814 39.3
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 2.7e-134 483.8 774 39.4
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 1.5e-132 478.0 548 48.7
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 3.3e-132 476.9 774 39.0
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 3.3e-132 476.9 772 39.2
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 1.3e-131 474.9 654 40.7
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 3.7e-131 473.4 773 39.3
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 5.0e-128 463.0 658 39.4
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 6.1e-126 456.1 744 39.9
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 7.4e-124 449.1 840 36.4
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 4.3e-116 423.3 818 35.7
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 4.5e-113 413.3 384 54.7
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 2.1e-110 404.4 783 35.2
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 3.2e-103 380.6 828 32.9
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.3e-98 363.2 831 34.1
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.3e-93 347.8 477 42.6
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 1.1e-90 339.0 693 34.2
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 9.1e-90 335.9 566 38.2
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 6.5e-88 329.7 787 32.5
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 4.7e-86 323.6 488 39.3
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 5.7e-84 316.6 324 52.5
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.2e-83 314.7 779 32.2
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.3e-77 294.7 564 35.5
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 6.3e-75 286.6 511 36.4
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.6e-73 280.4 788 31.5
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 8.6e-72 276.2 769 31.2
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 1.0e-69 269.2 433 38.8
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 5.0e-64 250.4 487 35.3
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.8e-61 240.0 453 37.7
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 1.4e-58 232.3 350 40.3
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.2e-54 219.2 433 35.3
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 3.6e-54 217.6 203 51.2
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 8.1e-54 216.5 180 56.7
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 4.0e-53 214.2 375 38.4
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 4.9e-51 207.2 680 28.7
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 3.6e-46 191.0 285 40.7
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 8.4e-43 179.9 395 29.9
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.9e-42 178.7 395 29.6
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 1.9e-39 168.7 204 47.5
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.3e-35 156.0 425 32.7
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 2.4e-34 151.8 246 37.4
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.2e-33 149.4 651 26.7
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 3.0e-32 144.8 258 35.7
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 1.3e-30 139.4 305 30.2
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 1.3e-30 139.4 305 30.2
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 4.8e-30 137.5 223 36.8
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.6e-28 131.7 242 38.0
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 9.9e-28 129.8 164 40.2
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.7e-27 129.0 705 23.3
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 2.2e-27 128.6 745 23.1
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.9e-27 128.3 382 31.2
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.9e-27 127.5 383 31.1
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 3.1e-21 108.2 409 25.7
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 1.2e-20 106.3 616 23.9
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 3.8e-19 101.3 183 37.2
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 3.3e-15 88.2 523 23.9
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 4.1e-13 81.3 241 33.6
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 4.5e-12 77.8 306 26.8
ATR0661G406 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.7e-09 68.6 208 30.3
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 2.2e-06 58.9 97 38.1


User provided reference genes

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