Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 0.0e+00 1751.9 885 100.0
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 0.0e+00 1162.1 965 65.0
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 0.0e+00 1136.3 944 66.3
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 0.0e+00 1119.4 896 65.1
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1110.1 861 67.4
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1106.3 877 65.9
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1098.2 944 63.6
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 0.0e+00 1095.5 954 61.8
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 0.0e+00 1085.1 955 61.5
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1079.3 895 64.7
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1078.9 895 64.7
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 0.0e+00 1076.6 865 65.1
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1076.6 923 62.3
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 0.0e+00 1075.5 902 62.9
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 1.2e-311 1072.8 972 60.3
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 2.4e-311 1072.0 975 60.4
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 7.3e-311 1070.5 883 63.9
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 1.2e-310 1069.7 962 60.2
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 1.1e-306 1056.6 956 59.7
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 4.0e-306 1054.7 871 66.2
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 8.9e-306 1053.5 980 59.8
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 4.4e-305 1051.2 929 62.0
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 9.9e-305 1050.0 958 59.8
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 1.3e-304 1049.7 986 58.9
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 2.2e-304 1048.9 896 62.4
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 2.9e-304 1048.5 920 61.1
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 1.1e-303 1046.6 936 63.5
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 7.8e-302 1040.4 913 62.7
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 2.3e-301 1038.9 952 59.0
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 1.1e-300 1036.6 923 60.7
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.1e-298 1030.0 898 61.8
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 5.3e-298 1027.7 922 60.5
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 4.9e-296 1021.1 888 61.6
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 9.3e-295 1016.9 964 62.0
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 2.7e-294 1015.4 937 58.9
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 1.7e-293 1012.7 887 61.6
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 2.1e-291 1005.7 956 58.7
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 6.2e-291 1004.2 914 63.2
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 1.4e-290 1003.0 956 58.9
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 2.4e-290 1002.3 962 59.4
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 1.3e-288 996.5 966 59.1
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 1.4e-287 993.0 905 60.7
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 6.7e-285 984.2 841 61.5
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 4.3e-284 981.5 841 61.4
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 2.4e-282 975.7 961 56.5
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.1e-282 975.3 765 65.4
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.7e-280 969.5 948 55.7
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.4e-279 966.5 948 55.7
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 5.5e-279 964.5 948 55.6
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.9e-277 958.4 947 54.8
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 5.1e-277 958.0 947 55.2
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 4.5e-273 944.9 906 58.5
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 7.6e-273 944.1 871 62.1
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 1.7e-272 943.0 797 61.6
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 1.4e-271 939.9 962 54.8
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 3.5e-270 935.3 939 56.7
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 7.4e-268 927.5 902 56.3
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.2e-265 920.2 941 54.5
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 6.5e-264 914.4 944 52.5
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 8.5e-264 914.1 936 55.4
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 1.8e-261 906.4 911 58.6
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 5.1e-261 904.8 876 57.1
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 2.0e-260 902.9 904 58.8
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 3.3e-260 902.1 932 57.8
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 2.8e-259 899.0 928 54.7
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 2.0e-257 892.9 904 54.3
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 4.5e-257 891.7 964 56.3
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 7.9e-254 880.9 756 60.7
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 3.0e-253 879.0 940 54.5
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 3.0e-253 879.0 947 52.0
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 8.2e-251 870.9 781 57.7
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 1.9e-247 859.8 914 55.5
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 2.7e-246 855.9 960 55.3
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 6.1e-246 854.7 910 55.2
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 1.8e-242 843.2 957 50.3
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.0e-241 839.7 738 58.7
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 2.9e-240 835.9 960 50.4
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 1.9e-239 833.2 960 50.6
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 3.6e-238 828.9 953 49.0
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 1.5e-236 823.5 965 51.5
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 5.7e-236 821.6 952 49.6
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 5.7e-236 821.6 952 49.6
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 4.8e-235 818.5 796 54.3
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 3.1e-234 815.8 954 49.1
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 2.9e-232 809.3 961 49.5
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 5.0e-232 808.5 952 49.8
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 5.0e-232 808.5 952 49.8
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 5.5e-231 805.1 592 68.2
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 4.7e-230 802.0 805 54.7
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 8.8e-229 797.7 953 50.2
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 1.5e-228 797.0 953 51.0
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 3.4e-228 795.8 710 58.6
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 9.8e-228 794.3 953 50.8
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 1.4e-226 790.4 828 51.9
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 2.7e-225 786.2 953 50.5
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 9.5e-223 777.7 954 47.8
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 1.2e-217 760.8 751 53.1
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 3.7e-211 739.2 708 55.4
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 1.3e-203 714.1 905 46.3
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 7.1e-202 708.4 487 70.2
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 9.5e-199 698.0 483 68.7
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.3e-197 693.3 489 69.3
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.3e-187 661.0 544 58.6
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 7.6e-180 635.2 589 56.2
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 1.3e-155 554.7 391 70.1
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 1.4e-146 524.6 694 46.1
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.1e-127 461.8 421 53.4
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 2.7e-108 397.5 500 59.0
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 1.8e-101 374.8 360 52.8
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 2.9e-86 324.3 410 46.3
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 1.1e-85 322.4 388 59.5
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 8.7e-67 259.6 327 42.2
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.1e-53 216.1 365 37.5
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 4.8e-49 200.7 259 51.4
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 4.8e-49 200.7 259 51.4
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 5.5e-37 160.6 352 33.8
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.2e-36 159.5 351 33.6
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 6.1e-36 157.1 352 33.5
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 6.1e-36 157.1 352 33.5
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.2e-23 116.3 268 30.2
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.5e-23 115.9 340 27.4
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 2.0e-23 115.5 352 29.3
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 5.7e-18 97.4 136 41.9
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.1e-16 91.3 303 28.4
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 4.5e-15 87.8 102 50.0
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.0e-14 86.7 298 28.2
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 5.0e-14 84.3 57 70.2
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.0e-11 74.7 176 32.4
Dinv24731 Davidia involucrata HOM05D005963 ORTHO05D006869 3.1e-08 65.1 59 61.0
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 2.0e-07 62.4 166 28.3
DCAR_000127 Daucus carota HOM05D002537 ORTHO05D002751 1.7e-06 59.3 123 31.7
DCAR_024631 Daucus carota HOM05D002537 ORTHO05D002751 1.7e-06 59.3 123 31.7
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 3.8e-06 58.2 88 37.5
Nitab4.5_0007658g0010 Nicotiana tabacum HOM05D002537 ORTHO05D002751 5.0e-06 57.8 128 31.2
Mapoly0001s0020 Marchantia polymorpha HOM05D002537 ORTHO05D002751 6.5e-06 57.4 134 28.4


User provided reference genes

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