Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C330T4 Lonicera japonica HOM05D000375 ORTHO05D000240 6.4e-131 470.7 230 100.0
Sopen12g031960 Solanum pennellii HOM05D000375 ORTHO05D000240 3.1e-32 142.9 155 57.4
Solyc12g096070.2 Solanum lycopersicum HOM05D000375 ORTHO05D000240 5.2e-32 142.1 155 57.4
PGSC0003DMG400029384 Solanum tuberosum HOM05D000375 ORTHO05D000240 1.5e-31 140.6 156 56.4
Nitab4.5_0000943g0150 Nicotiana tabacum HOM05D000375 ORTHO05D000240 3.2e-29 132.9 152 55.9
CAN.G1269.5 Capsicum annuum HOM05D000375 ORTHO05D000240 9.2e-29 131.3 152 50.7
PGSC0003DMG400030881 Solanum tuberosum HOM05D000375 ORTHO05D000240 1.2e-28 131.0 155 51.6
Sopen08g024600 Solanum pennellii HOM05D000375 ORTHO05D000240 1.6e-28 130.6 155 51.0
Lj7C161G5 Lonicera japonica HOM05D000375 ORTHO05D000240 2.1e-28 130.2 159 52.2
Dinv28022 Davidia involucrata HOM05D000375 ORTHO05D000240 2.7e-28 129.8 149 53.7
Solyc08g075950.3 Solanum lycopersicum HOM05D000375 ORTHO05D000240 3.5e-28 129.4 152 51.3
Nitab4.5_0001033g0050 Nicotiana tabacum HOM05D000375 ORTHO05D000240 1.0e-27 127.9 152 52.0
Nitab4.5_0006741g0010 Nicotiana tabacum HOM05D000375 ORTHO05D000240 1.7e-27 127.1 152 53.3
HanXRQChr13g0405031 Helianthus annuus HOM05D000375 ORTHO05D000240 1.3e-25 120.9 149 51.7
CAN.G137.32 Capsicum annuum HOM05D000375 ORTHO05D000240 2.8e-25 119.8 151 50.3
Nitab4.5_0003970g0050 Nicotiana tabacum HOM05D000375 ORTHO05D000240 2.8e-25 119.8 152 50.0
Peaxi162Scf00408g00710 Petunia axillaris HOM05D000375 ORTHO05D000240 3.6e-25 119.4 134 53.0
Sopen08g001470 Solanum pennellii HOM05D000375 ORTHO05D000240 8.1e-25 118.2 152 49.3
ECA240G3340 Erigeron canadensis HOM05D000375 ORTHO05D000240 1.1e-24 117.9 154 49.4
HanXRQChr03g0082181 Helianthus annuus HOM05D000375 ORTHO05D000240 1.4e-24 117.5 154 48.1
PGSC0003DMG400018491 Solanum tuberosum HOM05D000375 ORTHO05D000240 1.4e-24 117.5 151 51.7
Solyc08g005430.3 Solanum lycopersicum HOM05D000375 ORTHO05D000240 4.0e-24 115.9 152 49.3
DCAR_008187 Daucus carota HOM05D000375 ORTHO05D000240 5.3e-24 115.5 158 50.0
Oeu059315.1 Olea europaea HOM05D000375 ORTHO05D000240 5.8e-23 112.1 153 49.0
Hma1.2p1_1179F.1_g264560 Hydrangea macrophylla HOM05D000375 ORTHO05D000240 1.7e-22 110.5 152 48.0
Nitab4.5_0001424g0060 Nicotiana tabacum HOM05D000375 ORTHO05D000240 1.7e-22 110.5 149 49.7
PSO782G1866 Papaver somniferum HOM05D000375 ORTHO05D000240 3.8e-22 109.4 154 46.8
Nn1g02115 Nelumbo nucifera HOM05D000375 ORTHO05D000240 4.9e-22 109.0 157 47.1
MSTRG.11890 Avicennia marina HOM05D000375 ORTHO05D000240 1.6e-20 104.0 154 48.1
MSTRG.25719 Avicennia marina HOM05D000375 ORTHO05D000240 1.6e-20 104.0 173 43.9
SalBow4G0707 Salvia bowleyana HOM05D000375 ORTHO05D000240 2.7e-20 103.2 146 45.2
TAR629G1540 Trochodendron aralioides HOM05D000375 ORTHO05D000240 4.6e-20 102.4 155 46.5
Peaxi162Scf00045g00455 Petunia axillaris HOM05D000375 ORTHO05D000240 6.0e-20 102.1 150 46.0
DCAR_024949 Daucus carota HOM05D000375 ORTHO05D000240 1.3e-19 100.9 148 45.9
Oeu042217.2 Olea europaea HOM05D000375 ORTHO05D000240 2.3e-19 100.1 154 45.5
PSO063G6301 Papaver somniferum HOM05D000375 ORTHO05D000240 3.0e-19 99.8 151 43.0
Aqoxy3G01897 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 3.9e-19 99.4 154 45.5
CSS0005525 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 8.7e-19 98.2 156 42.3
CDE11G0058 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 2.5e-18 96.7 154 42.2
ATR0829G215 Amborella trichopoda HOM05D000375 ORTHO05D000240 4.3e-18 95.9 160 40.0
Atru.chr6.1499 Acer truncatum HOM05D000375 ORTHO05D000240 9.6e-18 94.7 145 44.1
CSS0047007 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 1.6e-17 94.0 153 41.2
CDE04G3543 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 4.8e-17 92.4 170 42.9
Actinidia14749 Actinidia chinensis HOM05D000375 ORTHO05D000240 1.4e-16 90.9 153 39.9
CDE02G1805 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 3.1e-16 89.7 153 39.9
CSS0033888 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 5.3e-16 89.0 144 41.0
unitig_747.g21926 Utricularia gibba HOM05D000375 ORTHO05D000240 5.3e-16 89.0 154 44.2
RcHm_v2.0_Chr7g0213331 Rosa chinensis HOM05D000375 ORTHO05D000240 9.0e-16 88.2 143 42.7
FAN04G1947 Fragaria x ananassa HOM05D000375 ORTHO05D000240 2.0e-15 87.0 143 42.7
FvH4_5g23900 Fragaria vesca HOM05D000375 ORTHO05D000240 2.6e-15 86.7 143 42.0
FAN08G2178 Fragaria x ananassa HOM05D000375 ORTHO05D000240 2.6e-15 86.7 143 42.0
FAN18G0915 Fragaria x ananassa HOM05D000375 ORTHO05D000240 2.6e-15 86.7 143 42.0
Ciclev10032065m.g Citrus clementina HOM05D000375 ORTHO05D000240 4.5e-15 85.9 154 40.3
FAN13G0427 Fragaria x ananassa HOM05D000375 ORTHO05D000240 4.5e-15 85.9 143 41.3
FAN18G1016 Fragaria x ananassa HOM05D000375 ORTHO05D000240 4.5e-15 85.9 143 41.3
SalBow8G5453 Salvia bowleyana HOM05D000375 ORTHO05D000240 7.6e-15 85.1 155 41.3
Cpa.g.sc43.137 Carica papaya HOM05D000375 ORTHO05D000240 9.9e-15 84.7 152 40.1
unitig_0.g2836 Utricularia gibba HOM05D000375 ORTHO05D000240 1.7e-14 84.0 148 43.9
Dinv29125 Davidia involucrata HOM05D000375 ORTHO05D000240 2.2e-14 83.6 152 40.1
Prupe.5G021400 Prunus persica HOM05D000375 ORTHO05D000240 2.2e-14 83.6 175 39.4
GSVIVG01024326001 Vitis vinifera HOM05D000375 ORTHO05D000240 2.2e-14 83.6 155 40.6
Actinidia18155 Actinidia chinensis HOM05D000375 ORTHO05D000240 3.8e-14 82.8 153 36.6
TWI34G0764 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 3.8e-14 82.8 146 38.4
QL09p020729 Quercus lobata HOM05D000375 ORTHO05D000240 6.4e-14 82.0 154 39.6
Migut.E01342 Erythranthe guttata HOM05D000375 ORTHO05D000240 8.4e-14 81.6 158 40.5
TPR.G9838 Trifolium pratense HOM05D000375 ORTHO05D000240 1.9e-13 80.5 149 36.9
CiPaw.05G212700 Carya illinoinensis HOM05D000375 ORTHO05D000240 2.4e-13 80.1 154 39.0
Lsat_1_v5_gn_6_75441 Lactuca sativa HOM05D000375 ORTHO05D000240 7.1e-13 78.6 114 43.9
Psat7g155280 Pisum sativum HOM05D000375 ORTHO05D000240 7.1e-13 78.6 149 36.2
RcHm_v2.0_Chr1g0384601 Rosa chinensis HOM05D000375 ORTHO05D000240 7.1e-13 78.6 154 37.0
CSS0048488 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 9.3e-13 78.2 164 36.0
COL.COLO4_15135 Corchorus olitorius HOM05D000375 ORTHO05D000240 1.2e-12 77.8 148 37.8
Duzib177G0248 Durio zibethinus HOM05D000375 ORTHO05D000240 1.2e-12 77.8 157 40.1
MSTRG.1777 Avicennia marina HOM05D000375 ORTHO05D000240 1.6e-12 77.4 155 38.7
Gohir.D03G054900 Gossypium hirsutum HOM05D000375 ORTHO05D000240 2.1e-12 77.0 153 37.9
Thecc.05G222800 Theobroma cacao HOM05D000375 ORTHO05D000240 2.1e-12 77.0 157 38.9
Haze_00370 Corylus avellana HOM05D000375 ORTHO05D000240 2.7e-12 76.6 145 39.3
Potri.013G077500 Populus trichocarpa HOM05D000375 ORTHO05D000240 2.7e-12 76.6 150 40.0
CSS0024801 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 4.6e-12 75.9 164 35.4
MD00G1001000 Malus domestica HOM05D000375 ORTHO05D000240 4.6e-12 75.9 169 37.3
Nitab4.5_0005880g0050 Nicotiana tabacum HOM05D000375 ORTHO05D000240 4.6e-12 75.9 151 39.1
Gohir.A02G125800 Gossypium hirsutum HOM05D000375 ORTHO05D000240 6.0e-12 75.5 144 39.6
Lj3g0001039 Lotus japonicus HOM05D000375 ORTHO05D000240 6.0e-12 75.5 145 37.9
CiPaw.06G036100 Carya illinoinensis HOM05D000375 ORTHO05D000240 7.9e-12 75.1 150 38.0
Ca_30884_v3 Cicer arietinum L. HOM05D000375 ORTHO05D000240 1.0e-11 74.7 150 36.7
Gorai.003G057700 Gossypium raimondii HOM05D000375 ORTHO05D000240 1.0e-11 74.7 153 37.3
TWI60G1010 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 1.0e-11 74.7 146 37.7
HPP92_025936 Vanilla planifolia HOM05D000375 ORTHO05D000240 1.3e-11 74.3 159 37.1
Ca_19983_v3 Cicer arietinum L. HOM05D000375 ORTHO05D000240 3.0e-11 73.2 148 36.5
Manes.08G160800 Manihot esculenta HOM05D000375 ORTHO05D000240 1.5e-10 70.9 154 35.7
Os06g0116200 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 1.5e-10 70.9 143 35.0
Ciclev10001613m.g Citrus clementina HOM05D000375 ORTHO05D000240 1.9e-10 70.5 145 38.6
CsaV3_2G035970 Cucumis sativus L. HOM05D000375 ORTHO05D000240 1.9e-10 70.5 150 34.7
Medtr0001s0490 Medicago truncatula HOM05D000375 ORTHO05D000240 1.9e-10 70.5 150 35.3
Sed0008187 Sechium edule HOM05D000375 ORTHO05D000240 1.9e-10 70.5 148 35.1
HPP92_003429 Vanilla planifolia HOM05D000375 ORTHO05D000240 1.9e-10 70.5 175 33.1
Sed0015644 Sechium edule HOM05D000375 ORTHO05D000240 3.3e-10 69.7 150 36.0
TWI32G1125 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 4.3e-10 69.3 145 33.8
MELO3C024739.2 Cucumis melo HOM05D000375 ORTHO05D000240 5.6e-10 68.9 148 34.5
SGA_v2.0_scaffold96G29055 Striga asiatica HOM05D000375 ORTHO05D000240 5.6e-10 68.9 157 38.2
Atru.chr12.1872 Acer truncatum HOM05D000375 ORTHO05D000240 7.4e-10 68.6 156 37.8
Sabra13G0066200 Salix brachista HOM05D000375 ORTHO05D000240 7.4e-10 68.6 150 37.3
Manes.09G129700 Manihot esculenta HOM05D000375 ORTHO05D000240 1.3e-09 67.8 151 38.4
Nn6g35612 Nelumbo nucifera HOM05D000375 ORTHO05D000240 1.6e-09 67.4 165 35.2
FvH4_7g34250 Fragaria vesca HOM05D000375 ORTHO05D000240 6.2e-09 65.5 150 34.0
ClCG02G007720 Citrullus lanatus HOM05D000375 ORTHO05D000240 1.1e-08 64.7 148 33.8
Migut.A00569 Erythranthe guttata HOM05D000375 ORTHO05D000240 1.1e-08 64.7 157 36.9
FAN10G1755 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.1e-08 64.7 150 34.0
FAN03G3075 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.4e-08 64.3 148 33.8
Zm00001eb378820 Zea mays HOM05D000375 ORTHO05D000240 1.4e-08 64.3 142 34.5
Gohir.D13G162200 Gossypium hirsutum HOM05D000375 ORTHO05D000240 1.8e-08 63.9 133 41.4
Gorai.013G184200 Gossypium raimondii HOM05D000375 ORTHO05D000240 1.8e-08 63.9 133 41.4
Potri.019G042300 Populus trichocarpa HOM05D000375 ORTHO05D000240 1.8e-08 63.9 165 31.5
FAN01G2079 Fragaria x ananassa HOM05D000375 ORTHO05D000240 3.1e-08 63.2 148 33.8
Glyma.11G110700 Glycine max HOM05D000375 ORTHO05D000240 3.1e-08 63.2 143 35.0
TAR636G1015 Trochodendron aralioides HOM05D000375 ORTHO05D000240 3.1e-08 63.2 180 32.2
Zm00001eb071830 Zea mays HOM05D000375 ORTHO05D000240 3.1e-08 63.2 130 36.2
Mapoly1350s0001 Marchantia polymorpha HOM05D000375 ORTHO05D000240 4.0e-08 62.8 163 31.3
Phvul.011G017700 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 4.0e-08 62.8 151 33.8
Os02g0701300 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 5.3e-08 62.4 134 36.6
TWI34G0526 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 6.9e-08 62.0 141 31.2
Duzib168G0891 Durio zibethinus HOM05D000375 ORTHO05D000240 9.0e-08 61.6 149 36.2
Lalb_Chr09g0320071 Lupinus albus HOM05D000375 ORTHO05D000240 9.0e-08 61.6 69 50.7
AUR62028212 Chenopodium quinoa HOM05D000375 ORTHO05D000240 1.2e-07 61.2 144 33.3
Glyma.12G014700 Glycine max HOM05D000375 ORTHO05D000240 1.5e-07 60.8 145 34.5
Thecc.09G078900 Theobroma cacao HOM05D000375 ORTHO05D000240 2.0e-07 60.5 161 35.4
Gohir.A13G157400 Gossypium hirsutum HOM05D000375 ORTHO05D000240 2.6e-07 60.1 71 54.9
AUR62002094 Chenopodium quinoa HOM05D000375 ORTHO05D000240 7.6e-07 58.5 144 31.9
vmacro14230 Vaccinium macrocarpon HOM05D000375 ORTHO05D000240 7.6e-07 58.5 175 33.1
Nn8g38673 Nelumbo nucifera HOM05D000375 ORTHO05D000240 1.0e-06 58.2 155 35.5
Rhsim07G0138200 Rhododendron simsii HOM05D000375 ORTHO05D000240 1.3e-06 57.8 146 37.7
Gohir.A05G033300 Gossypium hirsutum HOM05D000375 ORTHO05D000240 4.9e-06 55.8 145 36.6
Gohir.D05G034800 Gossypium hirsutum HOM05D000375 ORTHO05D000240 4.9e-06 55.8 145 36.6
Phvul.002G041800 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 4.9e-06 55.8 140 35.7
Gorai.009G035200 Gossypium raimondii HOM05D000375 ORTHO05D000240 6.4e-06 55.5 145 36.6
Medtr4g125490 Medicago truncatula HOM05D000375 ORTHO05D000240 6.4e-06 55.5 146 33.6
Os04g0600900 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 6.4e-06 55.5 134 33.6


User provided reference genes

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