Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 4.4e-86 321.6 210 100.0
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 2.7e-51 206.1 206 62.1
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.6e-38 162.9 211 61.1
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 2.9e-37 159.5 210 60.5
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 8.4e-37 157.9 140 60.7
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 7.1e-36 154.8 210 51.0
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 9.3e-36 154.5 210 48.6
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.1e-35 153.3 213 58.2
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 6.0e-35 151.8 211 53.6
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 6.0e-35 151.8 211 53.1
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 3.0e-34 149.4 212 53.8
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 3.9e-34 149.1 210 49.5
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.5e-33 147.1 212 58.0
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.5e-33 147.1 211 58.3
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 1.5e-33 147.1 141 57.4
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.9e-33 146.7 141 56.0
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 1.9e-33 146.7 210 54.8
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 2.5e-33 146.4 136 55.9
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 5.7e-33 145.2 211 52.1
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 9.6e-33 144.4 145 58.6
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.1e-32 143.3 130 58.5
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.1e-32 143.3 139 59.7
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 3.7e-32 142.5 216 48.6
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 6.2e-32 141.7 143 57.3
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 6.2e-32 141.7 212 50.5
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 8.2e-32 141.4 213 48.8
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 1.1e-31 141.0 120 61.7
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.1e-31 141.0 139 56.1
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 1.4e-31 140.6 211 54.5
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 1.4e-31 140.6 208 54.8
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.8e-31 140.2 141 55.3
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 2.4e-31 139.8 141 54.6
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.4e-31 139.8 137 55.5
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 2.4e-31 139.8 133 57.9
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 3.1e-31 139.4 210 54.8
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 3.1e-31 139.4 141 56.0
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 3.1e-31 139.4 210 48.1
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 3.1e-31 139.4 138 55.8
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 3.1e-31 139.4 211 43.6
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 5.3e-31 138.7 142 59.2
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 5.3e-31 138.7 135 58.5
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 6.9e-31 138.3 211 50.7
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 6.9e-31 138.3 141 56.0
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 9.0e-31 137.9 136 57.4
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 9.0e-31 137.9 211 50.2
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 1.5e-30 137.1 141 55.3
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 2.0e-30 136.7 144 55.6
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 2.0e-30 136.7 142 54.2
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 2.0e-30 136.7 214 50.9
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 2.6e-30 136.3 141 53.9
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 2.6e-30 136.3 142 55.6
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 3.4e-30 136.0 208 57.7
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 4.5e-30 135.6 143 53.8
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 4.5e-30 135.6 138 51.4
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 5.8e-30 135.2 142 54.9
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 7.6e-30 134.8 137 59.1
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 1.0e-29 134.4 142 52.8
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.0e-29 134.4 136 51.5
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 1.0e-29 134.4 141 55.3
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.0e-29 134.4 212 54.2
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 1.3e-29 134.0 143 53.1
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.3e-29 134.0 142 52.8
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 2.2e-29 133.3 136 56.6
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 2.2e-29 133.3 134 54.5
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 2.9e-29 132.9 150 53.3
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 3.8e-29 132.5 141 51.8
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 3.8e-29 132.5 128 57.0
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 5.0e-29 132.1 139 55.4
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 8.4e-29 131.3 231 50.2
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 1.1e-28 131.0 212 47.6
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 1.9e-28 130.2 140 55.0
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 2.5e-28 129.8 141 51.8
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 2.5e-28 129.8 226 53.1
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 3.2e-28 129.4 133 54.1
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 4.2e-28 129.0 122 57.4
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 4.2e-28 129.0 141 53.2
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 5.5e-28 128.6 142 51.4
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.6e-27 127.1 144 53.5
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 1.6e-27 127.1 191 52.4
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 2.1e-27 126.7 146 51.4
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 2.1e-27 126.7 221 43.0
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 2.7e-27 126.3 222 45.5
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 3.5e-27 125.9 141 49.6
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 3.5e-27 125.9 144 48.6
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 3.5e-27 125.9 122 53.3
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 6.1e-27 125.2 142 54.2
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.8e-26 123.6 141 51.8
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 2.3e-26 123.2 142 51.4
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.0e-26 122.9 208 45.2
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 3.9e-26 122.5 146 49.3
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 3.9e-26 122.5 233 50.6
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 3.9e-26 122.5 212 43.4
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 6.7e-26 121.7 139 52.5
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 8.7e-26 121.3 210 44.8
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.5e-25 120.6 208 42.8
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.5e-25 120.6 87 71.3
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 5.7e-25 118.6 126 51.6
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.8e-24 116.3 208 50.5
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 4.8e-24 115.5 137 51.1
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 4.8e-24 115.5 143 49.7
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 8.2e-24 114.8 142 51.4
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 8.2e-24 114.8 136 46.3
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 8.2e-24 114.8 135 53.3
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 3.1e-23 112.8 208 45.2
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 6.9e-23 111.7 136 48.5
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.9e-23 111.7 86 66.3
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 9.0e-23 111.3 135 50.4
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 5.9e-22 108.6 134 50.0
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 1.3e-21 107.5 139 48.2
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 1.3e-21 107.5 139 48.2
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 1.3e-21 107.5 139 48.2
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 5.0e-21 105.5 143 46.2
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 6.5e-21 105.1 152 63.2
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 6.5e-21 105.1 143 46.9
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 6.5e-21 105.1 143 46.9
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.4e-20 104.0 91 64.8
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 2.5e-20 103.2 95 58.9
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.5e-20 103.2 200 53.0
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 4.2e-20 102.4 132 43.9
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 5.5e-20 102.1 143 45.5
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 2.7e-19 99.8 101 55.4
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 2.7e-19 99.8 97 57.7
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 2.7e-19 99.8 121 50.4
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 3.6e-19 99.4 72 65.3
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 6.1e-19 98.6 155 41.9
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 7.9e-19 98.2 96 58.3
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 7.9e-19 98.2 124 47.6
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 7.9e-19 98.2 83 57.8
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 1.4e-18 97.4 94 58.5
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 1.8e-18 97.1 81 63.0
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 1.8e-18 97.1 125 48.0
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 1.8e-18 97.1 81 63.0
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 3.0e-18 96.3 124 47.6
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 3.0e-18 96.3 124 47.6
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 6.7e-18 95.1 187 39.0
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 6.7e-18 95.1 81 63.0
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 1.1e-15 87.8 122 45.9
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.4e-15 87.4 151 42.4
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 3.1e-15 86.3 54 81.5
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 4.1e-15 85.9 64 65.6
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 6.9e-15 85.1 62 69.4
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 2.6e-14 83.2 75 57.3
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.6e-14 83.2 63 61.9
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 5.9e-14 82.0 57 70.2
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 2.2e-13 80.1 143 38.5
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.2e-12 76.3 62 64.5
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 4.7e-11 72.4 60 60.0
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.4e-10 70.9 62 59.7
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 2.3e-10 70.1 115 44.3
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.1e-09 67.8 85 48.2
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 2.8e-08 63.2 100 39.0
FAN10G1293 Fragaria x ananassa HOM05D004771 ORTHO05D005565 2.6e-06 56.6 42 59.5


User provided reference genes

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