Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 4.5e-25 117.1 57 100.0
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 2.1e-22 108.2 57 93.0
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 2.1e-22 108.2 57 93.0
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 7.4e-20 99.8 57 80.7
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 1.3e-19 99.0 55 85.5
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 2.2e-19 98.2 57 78.9
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 2.8e-19 97.8 57 78.9
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 8.2e-19 96.3 57 75.4
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 1.4e-18 95.5 57 75.4
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 2.4e-18 94.7 57 77.2
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 3.1e-18 94.4 57 77.2
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 4.1e-18 94.0 57 73.7
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 5.3e-18 93.6 55 74.5
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 6.9e-18 93.2 57 75.4
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 1.2e-17 92.4 57 75.4
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 5.9e-17 90.1 57 70.2
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 7.6e-17 89.7 57 71.9
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 7.6e-17 89.7 57 71.9
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 1.0e-16 89.4 53 73.6
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 1.3e-16 89.0 54 74.1
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 2.2e-16 88.2 57 73.7
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 2.9e-16 87.8 57 73.7
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 2.9e-16 87.8 53 71.7
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 5.0e-16 87.0 52 73.1
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 8.5e-16 86.3 55 69.1
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 1.1e-15 85.9 53 69.8
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 1.1e-15 85.9 53 69.8
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 1.1e-15 85.9 53 69.8
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 1.1e-15 85.9 53 71.7
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 1.4e-15 85.5 55 69.1
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 1.4e-15 85.5 55 69.1
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 1.4e-15 85.5 53 67.9
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 1.9e-15 85.1 51 74.5
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 1.9e-15 85.1 55 69.1
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 2.5e-15 84.7 55 65.5
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 2.5e-15 84.7 54 68.5
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 2.5e-15 84.7 55 69.1
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 2.5e-15 84.7 53 69.8
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 3.2e-15 84.3 56 64.3
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 3.2e-15 84.3 55 63.6
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 4.2e-15 84.0 55 65.5
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 4.2e-15 84.0 51 72.5
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 5.5e-15 83.6 57 64.9
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 5.5e-15 83.6 55 69.1
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 5.5e-15 83.6 55 69.1
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 5.5e-15 83.6 55 69.1
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 7.2e-15 83.2 55 67.3
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 7.2e-15 83.2 55 67.3
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 7.2e-15 83.2 55 67.3
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 9.3e-15 82.8 57 68.4
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 9.3e-15 82.8 55 65.5
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 1.2e-14 82.4 55 65.5
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 1.2e-14 82.4 55 65.5
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 1.2e-14 82.4 55 65.5
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 1.2e-14 82.4 55 65.5
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 1.2e-14 82.4 55 65.5
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 1.2e-14 82.4 53 67.9
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 1.2e-14 82.4 53 67.9
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 1.6e-14 82.0 53 67.9
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 2.1e-14 81.6 55 63.6
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 2.1e-14 81.6 53 67.9
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 2.1e-14 81.6 55 63.6
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 2.1e-14 81.6 55 63.6
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 2.1e-14 81.6 55 63.6
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 2.1e-14 81.6 55 63.6
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 2.1e-14 81.6 53 67.9
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 2.1e-14 81.6 55 65.5
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 2.7e-14 81.3 55 65.5
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 2.7e-14 81.3 52 67.3
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 3.6e-14 80.9 55 63.6
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 3.6e-14 80.9 55 63.6
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 3.6e-14 80.9 55 63.6
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 3.6e-14 80.9 55 63.6
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 4.6e-14 80.5 55 63.6
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 4.6e-14 80.5 55 67.3
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 6.1e-14 80.1 55 65.5
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 6.1e-14 80.1 55 65.5
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 7.9e-14 79.7 55 65.5
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 7.9e-14 79.7 53 64.2
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 7.9e-14 79.7 55 61.8
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 7.9e-14 79.7 55 63.6
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 7.9e-14 79.7 53 66.0
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 1.0e-13 79.3 52 65.4
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 1.0e-13 79.3 55 63.6
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 1.0e-13 79.3 53 66.0
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 1.0e-13 79.3 55 61.8
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 1.0e-13 79.3 55 63.6
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 1.4e-13 79.0 55 63.6
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 1.4e-13 79.0 56 69.6
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 2.3e-13 78.2 55 65.5
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 3.9e-13 77.4 55 60.0
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 3.9e-13 77.4 54 61.1
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 5.1e-13 77.0 55 65.5
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 8.8e-13 76.3 55 65.5
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 8.8e-13 76.3 53 62.3
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 8.8e-13 76.3 55 63.6
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 1.1e-12 75.9 53 62.3
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 1.5e-12 75.5 55 65.5
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 1.5e-12 75.5 55 63.6
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 3.3e-12 74.3 55 65.5
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 4.3e-12 73.9 52 65.4
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 6.3e-11 70.1 51 64.7
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 1.1e-10 69.3 42 69.0
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 1.1e-10 69.3 55 50.9
CARHR174410 Cardamine hirsuta HOM05D006103 ORTHO05D007468 4.1e-10 67.4 43 69.8
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 4.5e-09 63.9 43 62.8
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 6.5e-08 60.1 53 50.9
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 1.9e-07 58.5 51 49.0
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 3.2e-07 57.8 51 51.0


User provided reference genes

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