Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 7.7e-171 604.0 364 100.0
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 2.3e-159 565.8 390 87.4
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 1.1e-127 460.7 380 80.3
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 4.5e-78 295.8 366 50.0
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.8e-77 292.7 365 49.3
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 2.1e-75 287.0 368 48.4
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 7.4e-73 278.5 365 47.1
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 6.1e-67 258.8 370 43.8
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.9e-66 256.1 371 46.1
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 2.6e-65 253.4 369 45.3
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 9.7e-65 251.5 371 42.9
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 1.7e-64 250.8 366 43.2
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 4.8e-64 249.2 370 43.2
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 8.2e-64 248.4 365 43.6
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 8.2e-64 248.4 368 43.8
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 5.3e-63 245.7 368 44.3
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.5e-62 243.0 365 44.1
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 1.3e-61 241.1 369 43.6
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 3.8e-61 239.6 389 41.1
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 9.4e-60 235.0 369 43.1
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 3.9e-58 229.6 365 41.6
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 1.1e-57 228.0 365 40.3
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.5e-57 227.6 369 41.5
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 6.3e-56 222.2 384 38.8
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.1e-55 221.5 366 42.1
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 1.8e-55 220.7 394 38.1
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.4e-55 220.3 375 41.6
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 4.1e-55 219.5 368 41.0
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 2.6e-54 216.9 368 47.6
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 5.9e-54 215.7 354 42.4
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.2e-53 213.8 389 39.3
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 2.2e-53 213.8 364 38.5
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.9e-53 213.4 394 40.9
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 8.5e-53 211.8 350 40.0
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 1.1e-52 211.5 368 38.6
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 5.5e-52 209.1 386 38.9
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 9.4e-52 208.4 164 67.1
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 9.4e-52 208.4 164 67.1
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 2.1e-51 207.2 373 38.3
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 8.0e-51 205.3 366 39.1
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 1.0e-50 204.9 393 38.9
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.0e-50 203.4 387 39.8
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.0e-50 203.0 386 37.8
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 5.2e-50 202.6 365 45.8
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 8.8e-50 201.8 350 39.4
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 8.8e-50 201.8 374 37.7
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.2e-49 201.4 350 39.4
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 2.0e-49 200.7 350 39.7
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 2.6e-49 200.3 366 38.5
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 4.4e-49 199.5 375 40.3
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 4.4e-49 199.5 234 48.3
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.3e-48 198.0 230 47.4
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 1.7e-48 197.6 366 37.4
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.7e-48 197.6 368 49.2
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 2.2e-48 197.2 347 39.5
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 3.7e-48 196.4 352 39.5
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.3e-48 195.7 363 37.7
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 6.3e-48 195.7 357 38.7
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.1e-47 194.9 386 37.0
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 1.1e-47 194.9 367 39.0
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 1.4e-47 194.5 367 38.4
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 7.0e-47 192.2 158 63.3
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 7.0e-47 192.2 371 37.5
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 9.1e-47 191.8 382 36.6
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 1.6e-46 191.0 367 39.5
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 3.5e-46 189.9 367 38.1
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 5.9e-46 189.1 199 53.3
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 5.9e-46 189.1 371 38.3
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 1.3e-45 188.0 363 38.3
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 3.8e-45 186.4 371 38.3
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 6.5e-45 185.7 367 38.4
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-44 184.9 361 35.7
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 2.5e-44 183.7 383 35.8
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 3.2e-44 183.3 367 36.2
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 3.2e-44 183.3 368 39.1
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 4.2e-44 183.0 361 38.2
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 5.5e-44 182.6 373 38.3
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 5.5e-44 182.6 396 36.4
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 7.2e-44 182.2 349 35.5
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 9.4e-44 181.8 364 39.3
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 9.4e-44 181.8 376 37.2
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.2e-43 181.4 366 37.2
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.1e-43 180.6 347 35.2
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 2.7e-43 180.3 379 35.6
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 2.7e-43 180.3 367 37.9
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 8.8e-42 175.3 368 36.4
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.2e-41 174.9 176 54.0
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 4.4e-41 172.9 365 34.5
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 5.7e-41 172.6 357 45.9
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 9.8e-41 171.8 186 54.8
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.3e-40 171.4 165 56.4
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 6.3e-40 169.1 164 56.7
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 6.3e-40 169.1 348 37.6
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.4e-39 167.9 377 34.7
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.8e-39 167.5 366 35.8
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 1.8e-39 167.5 172 51.7
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.1e-39 166.8 345 33.3
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 9.1e-39 165.2 163 51.5
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.1e-39 165.2 153 55.6
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 1.2e-38 164.9 368 35.1
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 1.6e-38 164.5 399 33.8
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 2.7e-38 163.7 366 34.4
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.9e-38 162.5 162 52.5
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 7.7e-38 162.2 355 36.6
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 6.6e-37 159.1 168 51.2
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 1.1e-36 158.3 138 58.0
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 9.5e-36 155.2 347 32.6
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 1.2e-35 154.8 153 54.9
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.0e-35 152.1 337 33.8
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.0e-34 151.8 204 41.7
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.5e-33 147.9 398 31.7
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 5.7e-33 146.0 172 48.3
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 1.7e-32 144.4 148 50.0
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 1.8e-31 141.0 369 33.1
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 2.4e-31 140.6 172 46.5
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.6e-30 137.9 140 53.6
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.6e-30 137.9 140 53.6
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 4.6e-30 136.3 172 47.1
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 4.6e-30 136.3 340 30.3
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 7.8e-30 135.6 175 46.3
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.0e-29 135.2 141 51.8
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.7e-29 134.4 161 47.8
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 2.3e-29 134.0 140 52.9
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 2.9e-29 133.7 113 60.2
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 3.9e-29 133.3 141 52.5
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 3.9e-29 133.3 141 52.5
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 5.0e-29 132.9 195 42.1
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 3.3e-28 130.2 255 36.1
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 5.6e-28 129.4 407 30.7
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 7.3e-28 129.0 283 33.9
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.2e-27 128.3 156 46.2
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 1.6e-27 127.9 275 33.8
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 6.1e-27 125.9 125 50.4
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.0e-26 125.2 250 37.2
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.4e-26 124.8 146 49.3
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.4e-26 124.8 146 49.3
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 3.1e-26 123.6 151 46.4
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.1e-26 123.6 122 53.3
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 4.0e-26 123.2 368 31.5
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 6.8e-26 122.5 152 44.7
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 1.2e-25 121.7 309 31.7
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 2.0e-25 120.9 145 47.6
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.2e-24 117.5 91 57.1
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 9.2e-23 112.1 93 66.7
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 2.7e-22 110.5 196 35.7
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 3.0e-21 107.1 177 38.4
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 3.0e-21 107.1 307 32.6
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 6.6e-21 105.9 369 31.7
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 9.5e-20 102.1 166 38.0
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 7.5e-17 92.4 146 40.4
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 1.3e-16 91.7 264 43.6
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.9e-16 90.5 85 51.8
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.3e-13 81.6 333 26.4
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.3e-13 80.9 55 65.5
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 5.6e-12 76.3 162 34.6
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 2.8e-11 73.9 54 55.6
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.5e-09 68.2 146 37.0
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 7.6e-09 65.9 113 39.8
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 4.9e-08 63.2 122 32.8
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.1e-07 62.0 83 45.8
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 7.1e-07 59.3 66 51.5
Sabra01G0079000 Salix brachista HOM05D004296 ORTHO05D005045 1.2e-06 58.5 90 42.2
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 4.6e-06 56.6 57 56.1


User provided reference genes

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