Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 0.0e+00 1498.8 852 100.0
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 8.2e-240 834.3 845 66.4
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.2e-222 777.3 848 63.9
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 1.8e-215 753.4 868 57.3
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 1.0e-213 747.7 848 60.4
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 3.4e-209 732.6 826 60.3
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 9.5e-204 714.5 863 57.6
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 2.0e-201 706.8 834 57.0
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 2.0e-201 706.8 846 55.9
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 4.4e-201 705.7 838 58.2
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 5.7e-201 705.3 848 57.8
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 2.2e-200 703.4 838 58.1
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 3.3e-196 689.5 837 57.2
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 1.8e-194 683.7 848 55.5
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 6.8e-194 681.8 852 56.1
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 1.2e-193 681.0 847 57.9
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.5e-193 680.6 851 57.6
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.6e-193 679.9 862 57.2
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 4.4e-193 679.1 854 56.9
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 7.5e-193 678.3 848 55.4
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.3e-192 677.6 855 56.6
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 4.9e-192 675.6 853 57.1
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 1.6e-190 670.6 828 56.8
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 6.0e-190 668.7 845 56.2
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 7.8e-190 668.3 845 57.0
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 1.0e-189 667.9 825 56.1
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 1.0e-189 667.9 829 56.2
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 1.0e-189 667.9 851 55.3
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 8.6e-189 664.8 825 56.6
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 5.6e-188 662.1 831 57.8
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 5.6e-188 662.1 926 50.8
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 5.6e-188 662.1 853 51.8
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 9.5e-188 661.4 843 55.4
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.1e-187 660.2 825 56.4
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 4.0e-186 656.0 825 55.5
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 2.0e-185 653.7 834 54.7
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 1.3e-184 651.0 829 55.2
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 2.2e-184 650.2 849 54.9
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 2.2e-184 650.2 807 56.9
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 2.9e-184 649.8 847 53.7
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 6.4e-184 648.7 845 55.6
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 7.1e-183 645.2 870 53.8
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 7.1e-183 645.2 835 53.4
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 7.8e-182 641.7 851 56.6
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 3.0e-181 639.8 835 53.5
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 6.6e-181 638.6 841 54.6
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 1.9e-180 637.1 823 53.6
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 2.5e-180 636.7 818 47.8
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 7.3e-180 635.2 835 53.1
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 9.5e-180 634.8 841 48.2
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 2.8e-179 633.3 839 54.7
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 1.8e-178 630.6 845 53.6
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 1.5e-177 627.5 827 50.4
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 5.8e-177 625.5 827 56.2
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 1.3e-176 624.4 818 52.1
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.3e-176 624.4 850 54.0
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 2.2e-176 623.6 837 48.1
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 4.9e-176 622.5 849 53.9
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 1.1e-175 621.3 824 53.9
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 1.1e-175 621.3 851 48.2
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 1.9e-175 620.5 816 49.9
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 5.4e-175 619.0 827 55.3
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 1.2e-174 617.8 841 54.3
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.6e-174 617.5 841 54.3
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 2.1e-174 617.1 822 52.9
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 6.0e-174 615.5 842 53.0
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 1.0e-173 614.8 869 48.0
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.3e-173 613.6 823 53.5
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 3.9e-173 612.8 857 47.6
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 5.1e-173 612.5 842 50.5
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 1.5e-172 610.9 813 51.3
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 1.5e-172 610.9 770 56.1
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.3e-172 609.4 836 52.8
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 2.8e-171 606.7 680 62.1
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 3.6e-171 606.3 847 46.4
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 6.2e-171 605.5 869 48.4
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 1.1e-170 604.7 791 56.0
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 1.8e-170 604.0 872 49.7
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 2.6e-169 600.1 801 53.1
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 2.9e-168 596.7 803 52.6
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 4.9e-168 595.9 842 51.1
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 1.1e-167 594.7 831 47.9
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 1.4e-167 594.3 840 51.9
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 7.3e-164 582.0 808 48.9
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 9.6e-164 581.6 880 46.4
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 3.4e-161 573.2 694 58.9
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 7.6e-161 572.0 704 58.1
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.2e-160 570.5 851 48.6
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 4.2e-159 566.2 825 50.4
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 1.8e-157 560.8 813 49.7
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 4.8e-155 552.7 808 46.3
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 1.3e-152 544.7 814 51.6
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 6.4e-152 542.3 820 51.7
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 1.0e-149 535.0 826 45.5
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 1.8e-149 534.3 751 53.8
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 2.3e-149 533.9 826 45.5
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 5.1e-149 532.7 827 45.5
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 6.7e-149 532.3 826 45.5
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 5.6e-148 529.3 824 49.3
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 5.0e-136 489.6 503 57.1
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 8.2e-131 472.2 858 43.1
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 6.7e-125 452.6 901 41.6
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 1.7e-120 438.0 873 41.8
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 7.2e-119 432.6 905 38.8
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 3.8e-112 410.2 853 43.4
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 1.1e-111 408.7 495 51.7
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 2.4e-106 391.0 795 43.6
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 2.0e-97 361.3 863 36.4
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 1.9e-95 354.8 908 36.2
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 8.6e-88 329.3 610 48.9
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 8.3e-75 286.2 595 37.0
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 8.1e-70 269.6 507 39.1
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.5e-68 265.4 250 60.4
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 5.4e-66 256.9 508 39.2
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 7.1e-66 256.5 463 39.5
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 1.2e-62 245.7 846 31.4
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 1.9e-50 205.3 835 30.5
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 1.3e-46 192.6 296 46.6
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 2.4e-45 188.3 447 34.5
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.6e-41 175.6 199 55.8
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 2.5e-39 168.3 379 35.9
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 3.3e-39 167.9 757 30.1
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.3e-38 166.0 114 72.8
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 1.5e-36 159.1 200 48.5
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 2.5e-31 141.7 235 40.0
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 7.6e-28 130.2 193 40.9
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 1.8e-24 119.0 173 44.5
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 3.9e-24 117.9 175 49.1
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 2.0e-20 105.5 156 42.3
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 2.6e-20 105.1 63 87.3
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 4.5e-20 104.4 65 83.1
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 2.2e-19 102.1 166 44.0
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 5.0e-19 100.9 75 65.3
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 8.5e-19 100.1 66 81.8
Lju225A6T16 Lonicera japonica HOM05D016202 ORTHO05D006406 5.1e-16 90.9 180 41.1
Lju170A31T10 Lonicera japonica HOM05D016202 ORTHO05D006406 9.7e-15 86.7 219 36.1
Lju170A28T4 Lonicera japonica HOM05D016202 ORTHO05D006406 2.2e-14 85.5 55 80.0
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 8.2e-14 83.6 130 42.3
Lj1C955T6 Lonicera japonica HOM05D016202 ORTHO05D006406 5.9e-12 77.4 58 69.0
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 9.4e-10 70.1 47 66.0
MSTRG.340 Avicennia marina HOM05D005855 ORTHO05D006406 4.7e-09 67.8 123 38.2
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 9.7e-07 60.1 125 37.6


User provided reference genes

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