Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 0.0e+00 1588.9 806 100.0
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 0.0e+00 1134.4 835 69.7
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1099.0 837 68.7
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1095.5 837 68.6
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 0.0e+00 1077.4 834 66.8
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 1.1e-310 1069.7 872 64.7
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 7.4e-307 1057.0 834 65.1
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 1.2e-304 1049.7 835 65.1
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 2.6e-304 1048.5 835 65.1
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 7.6e-304 1047.0 835 64.7
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.7e-303 1045.8 835 64.7
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 2.9e-303 1045.0 839 65.1
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 2.9e-303 1045.0 836 64.2
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 9.3e-302 1040.0 836 64.5
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 4.6e-301 1037.7 832 64.5
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 4.9e-295 1017.7 835 63.8
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 3.2e-294 1015.0 828 63.2
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 3.2e-294 1015.0 897 60.4
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 4.2e-294 1014.6 831 62.0
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 2.1e-293 1012.3 833 62.2
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 3.5e-293 1011.5 837 63.3
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 7.9e-293 1010.4 834 62.6
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 3.9e-292 1008.1 835 62.9
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 1.3e-290 1003.0 838 62.6
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 1.6e-290 1002.7 833 62.5
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 1.1e-289 1000.0 838 62.4
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 1.4e-289 999.6 838 62.4
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 1.7e-287 992.6 838 61.7
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 3.0e-284 981.9 832 60.9
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 3.9e-284 981.5 836 61.2
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 1.5e-283 979.5 805 63.5
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 7.4e-283 977.2 833 61.1
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 2.4e-281 972.2 841 61.0
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 4.5e-280 968.0 831 61.0
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 1.3e-279 966.5 835 60.8
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 2.2e-279 965.7 847 61.2
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 5.0e-279 964.5 837 61.5
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 2.5e-278 962.2 837 61.8
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 2.5e-278 962.2 834 61.6
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 9.4e-278 960.3 821 62.4
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 7.9e-277 957.2 835 60.0
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 1.8e-276 956.1 834 61.3
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 3.9e-276 954.9 837 60.1
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 1.7e-274 949.5 832 60.0
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 3.7e-274 948.3 836 61.1
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 4.5e-272 941.4 838 59.2
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 1.3e-271 939.9 836 60.0
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 3.8e-271 938.3 842 60.6
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 6.1e-269 931.0 838 58.7
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 6.1e-269 931.0 835 59.9
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 2.6e-267 925.6 836 59.7
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.2e-266 922.5 836 59.3
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 9.1e-265 917.1 832 57.8
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 1.6e-264 916.4 837 58.4
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.5e-264 915.2 837 58.9
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.7e-263 912.9 835 58.8
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 2.2e-263 912.5 833 58.5
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.5e-259 899.8 841 57.2
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.3e-258 896.7 839 58.2
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 2.2e-258 896.0 836 56.7
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 3.7e-258 895.2 834 56.5
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.7e-258 895.2 899 55.4
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 8.3e-258 894.0 835 57.1
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 1.4e-257 893.3 837 56.9
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 7.7e-256 887.5 840 56.5
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 1.0e-255 887.1 834 57.0
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 1.0e-255 887.1 863 56.1
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 2.9e-255 885.6 833 57.0
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 8.5e-255 884.0 823 57.1
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 5.5e-254 881.3 827 55.7
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 9.4e-254 880.6 835 57.5
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 1.6e-253 879.8 836 57.8
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 1.4e-252 876.7 833 56.1
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 4.4e-251 871.7 841 55.5
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 5.7e-251 871.3 835 55.8
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 7.5e-251 870.9 835 55.8
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 1.7e-250 869.8 840 55.8
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 2.2e-250 869.4 835 55.7
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 4.8e-250 868.2 834 55.9
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 4.1e-249 865.1 837 55.6
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.0e-247 860.5 829 54.5
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 1.6e-245 853.2 837 55.0
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 5.2e-244 848.2 839 55.8
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.5e-243 846.7 819 54.8
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 3.7e-242 842.0 837 54.2
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 4.9e-242 841.6 838 54.8
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 1.8e-241 839.7 839 55.3
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 2.4e-241 839.3 833 54.1
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 2.5e-238 829.3 827 54.5
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 4.7e-237 825.1 832 54.0
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.0e-231 807.4 820 52.6
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 1.1e-225 787.3 832 52.3
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 4.1e-225 785.4 751 55.5
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 2.8e-221 772.7 646 61.0
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 8.9e-220 767.7 907 48.0
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 1.3e-218 763.8 603 65.7
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 2.4e-217 759.6 837 49.9
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 5.1e-215 751.9 544 70.8
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 1.2e-213 747.3 839 49.9
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 2.4e-212 743.0 821 50.5
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 5.3e-180 635.6 468 70.1
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 6.9e-172 608.6 848 42.6
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 9.0e-172 608.2 832 43.3
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 7.2e-169 598.6 832 42.5
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 4.3e-166 589.3 864 41.4
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 1.7e-149 534.3 836 40.1
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 1.1e-137 495.0 854 35.4
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 4.2e-137 493.0 463 57.0
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 7.5e-134 482.3 847 37.5
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 4.1e-132 476.5 863 36.4
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 9.2e-132 475.3 671 40.8
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 4.5e-131 473.0 832 39.7
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 5.6e-129 466.1 850 35.5
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 4.7e-128 463.0 588 47.1
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 2.2e-117 427.6 851 33.3
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 9.2e-116 422.2 358 61.5
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 1.5e-113 414.8 836 36.1
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 5.8e-102 376.3 387 52.7
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 1.5e-86 325.1 759 29.6
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.1e-79 302.4 418 42.3
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 6.0e-67 260.0 203 68.5
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 1.9e-60 238.4 278 48.6
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.9e-60 238.4 156 72.4
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 2.7e-59 234.6 277 48.4
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 3.0e-58 231.1 277 48.0
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 2.2e-56 224.9 766 27.0
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 1.3e-48 199.1 204 53.4
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.7e-45 188.7 184 57.6
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 9.4e-44 183.0 845 24.7
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 1.5e-33 149.1 487 27.3
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 1.7e-32 145.6 136 52.2
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 2.8e-32 144.8 104 67.3
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 3.7e-32 144.4 130 53.1
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 2.5e-20 105.1 96 58.3
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 3.0e-18 98.2 63 79.4
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 1.7e-16 92.4 65 72.3
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 2.9e-13 81.6 110 41.8
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 8.6e-13 80.1 86 53.5
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 3.3e-12 78.2 67 56.7
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 5.6e-12 77.4 110 40.9
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 6.1e-11 73.9 79 45.6
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 8.9e-10 70.1 48 64.6
Lsat_1_v5_gn_4_117360 Lactuca sativa HOM05D004893 ORTHO05D006320 6.4e-08 63.9 72 52.8
Lsat_1_v5_gn_7_93920 Lactuca sativa HOM05D004893 ORTHO05D232711 1.6e-06 59.3 72 54.2


User provided reference genes

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