Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 8.2e-38 160.2 101 100.0
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 2.0e-20 102.4 78 80.8
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 8.5e-19 97.1 79 69.6
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.1e-18 96.7 79 69.6
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.2e-18 95.1 79 69.6
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 9.4e-18 93.6 83 74.7
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 3.6e-17 91.7 83 69.9
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 6.1e-17 90.9 79 68.4
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.4e-16 89.7 87 66.7
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.8e-16 89.4 79 62.0
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 5.1e-16 87.8 76 69.7
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.1e-15 86.7 85 69.4
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.1e-15 86.7 78 76.9
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.0e-15 85.9 76 76.3
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 5.7e-15 84.3 77 75.3
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 5.7e-15 84.3 79 59.5
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 5.7e-15 84.3 80 65.0
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 7.4e-15 84.0 79 59.5
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 9.7e-15 83.6 81 71.6
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.3e-14 83.2 76 75.0
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.7e-14 82.8 76 71.1
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 2.2e-14 82.4 82 67.1
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 3.7e-14 81.6 81 69.1
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 4.8e-14 81.3 84 65.5
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 4.8e-14 81.3 82 59.8
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 4.8e-14 81.3 77 77.9
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 6.3e-14 80.9 83 67.5
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.1e-13 80.1 59 69.5
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.1e-13 80.1 76 63.2
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.1e-13 80.1 79 62.0
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 1.1e-13 80.1 76 63.2
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.4e-13 79.7 78 57.7
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 1.4e-13 79.7 76 71.1
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.4e-13 79.7 76 71.1
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 1.8e-13 79.3 76 68.4
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.8e-13 79.3 76 61.8
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 1.8e-13 79.3 76 61.8
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.8e-13 79.3 71 74.6
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.8e-13 79.3 76 69.7
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.8e-13 79.3 79 67.1
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 3.1e-13 78.6 76 69.7
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 3.1e-13 78.6 76 67.1
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 3.1e-13 78.6 79 65.8
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 4.1e-13 78.2 82 65.9
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 4.1e-13 78.2 76 59.2
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 5.3e-13 77.8 76 63.2
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 5.3e-13 77.8 76 71.1
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 5.3e-13 77.8 76 71.1
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 7.0e-13 77.4 76 63.2
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 9.1e-13 77.0 76 67.1
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 1.2e-12 76.6 77 58.4
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 1.6e-12 76.3 76 60.5
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 1.6e-12 76.3 76 57.9
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.6e-12 76.3 79 70.9
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 2.0e-12 75.9 76 60.5
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 2.0e-12 75.9 77 58.4
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 2.0e-12 75.9 60 66.7
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 2.0e-12 75.9 60 66.7
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 2.6e-12 75.5 76 60.5
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 2.6e-12 75.5 76 65.8
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 2.6e-12 75.5 60 68.3
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 3.5e-12 75.1 76 60.5
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 3.5e-12 75.1 76 60.5
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 3.5e-12 75.1 76 67.1
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 3.5e-12 75.1 60 66.7
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 4.5e-12 74.7 76 57.9
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 4.5e-12 74.7 81 60.5
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 4.5e-12 74.7 76 60.5
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 5.9e-12 74.3 79 57.0
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 5.9e-12 74.3 82 64.6
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 5.9e-12 74.3 81 58.0
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 5.9e-12 74.3 85 52.9
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.7e-12 73.9 59 67.8
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.7e-12 73.9 59 67.8
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 1.0e-11 73.6 72 69.4
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.0e-11 73.6 76 57.9
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.3e-11 73.2 59 69.5
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.3e-11 73.2 59 69.5
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.3e-11 73.2 59 69.5
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.3e-11 73.2 59 69.5
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.3e-11 73.2 76 57.9
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.3e-11 73.2 59 69.5
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 1.3e-11 73.2 76 61.8
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 1.3e-11 73.2 59 71.2
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 1.3e-11 73.2 76 59.2
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.3e-11 73.2 59 69.5
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 2.2e-11 72.4 77 55.8
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.2e-11 72.4 76 67.1
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 2.9e-11 72.0 60 70.0
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.9e-11 72.0 60 70.0
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.9e-11 72.0 60 70.0
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 3.8e-11 71.6 59 67.8
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.8e-11 71.6 60 66.7
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.8e-11 71.6 76 59.2
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 6.5e-11 70.9 76 59.2
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 6.5e-11 70.9 81 54.3
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 8.5e-11 70.5 59 64.4
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.1e-10 70.1 80 52.5
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.1e-10 70.1 59 62.7
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 1.1e-10 70.1 80 55.0
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 1.5e-10 69.7 59 62.7
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 1.9e-10 69.3 60 63.3
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 1.9e-10 69.3 79 67.1
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.2e-10 68.6 60 68.3
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 4.2e-10 68.2 80 61.2
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 4.2e-10 68.2 76 56.6
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 5.5e-10 67.8 60 61.7
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 7.2e-10 67.4 56 62.5
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 7.2e-10 67.4 80 53.8
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 1.6e-09 66.2 56 60.7
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 6.1e-09 64.3 56 60.7
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 8.0e-09 63.9 79 53.2
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 1.0e-08 63.5 59 59.3
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 1.0e-08 63.5 75 49.3
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 1.4e-08 63.2 52 63.5
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 1.4e-08 63.2 52 65.4
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 1.8e-08 62.8 81 51.9
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.3e-08 62.4 81 50.6
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 2.3e-08 62.4 60 58.3
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 4.0e-08 61.6 59 57.6
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 5.2e-08 61.2 79 51.9
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 5.2e-08 61.2 79 51.9
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 6.7e-08 60.8 52 67.3
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 3.3e-07 58.5 80 52.5
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 3.3e-07 58.5 76 51.3
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 7.5e-07 57.4 78 51.3
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 7.5e-07 57.4 56 58.9
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 1.7e-06 56.2 79 45.6
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 2.2e-06 55.8 60 55.0
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 2.8e-06 55.5 59 52.5
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 8.2e-06 53.9 59 52.5


User provided reference genes

Program Settings