Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 2.9e-134 481.9 241 100.0
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 1.9e-117 426.0 239 88.7
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 2.5e-117 425.6 239 87.9
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 5.5e-117 424.5 239 87.9
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 2.3e-115 419.1 239 85.8
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 3.0e-115 418.7 239 86.2
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 8.8e-115 417.2 240 87.5
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 2.6e-114 415.6 239 84.9
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 7.5e-114 414.1 240 84.6
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 9.8e-114 413.7 240 84.6
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 2.8e-113 412.1 240 84.2
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 6.3e-113 411.0 239 84.9
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 8.3e-113 410.6 239 87.0
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 1.2e-111 406.8 239 85.4
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 2.7e-111 405.6 239 83.3
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 5.9e-111 404.4 239 83.7
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 5.9e-111 404.4 239 84.5
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 5.9e-111 404.4 239 84.5
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 7.7e-111 404.1 238 85.7
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 2.3e-110 402.5 240 82.5
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 3.8e-110 401.7 241 81.7
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 5.0e-110 401.4 239 84.1
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 6.6e-110 401.0 239 84.5
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 2.5e-109 399.1 239 82.8
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 3.3e-109 398.7 239 84.5
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 3.3e-109 398.7 240 82.5
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 4.3e-109 398.3 239 83.7
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 7.3e-109 397.5 239 83.7
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 7.3e-109 397.5 239 82.4
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 7.3e-109 397.5 237 82.7
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 9.5e-109 397.1 234 83.8
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 9.5e-109 397.1 239 83.3
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 1.2e-108 396.7 237 81.9
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 1.2e-108 396.7 232 84.9
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 1.2e-108 396.7 239 84.9
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 2.1e-108 396.0 239 81.6
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 2.8e-108 395.6 239 83.3
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 4.7e-108 394.8 237 82.7
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 1.0e-107 393.7 239 83.3
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 1.4e-107 393.3 239 84.1
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 4.0e-107 391.7 237 81.0
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 5.2e-107 391.3 236 80.1
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 8.9e-107 390.6 237 81.0
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 1.2e-106 390.2 237 80.6
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.5e-106 389.8 239 82.8
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 2.6e-106 389.0 239 80.3
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 8.3e-105 384.0 232 81.9
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.8e-104 382.9 238 79.0
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 4.1e-104 381.7 238 79.8
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 1.6e-103 379.8 239 80.8
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 1.6e-103 379.8 232 81.5
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 4.6e-103 378.3 240 77.5
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 1.0e-102 377.1 239 79.9
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 5.0e-102 374.8 232 81.0
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 6.6e-102 374.4 240 77.1
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 1.5e-101 373.2 232 80.6
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 1.5e-101 373.2 232 80.6
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 1.9e-101 372.9 232 79.7
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 3.3e-101 372.1 232 79.7
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 3.3e-101 372.1 232 79.7
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 5.6e-101 371.3 232 80.2
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 7.3e-101 370.9 238 77.3
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 9.5e-101 370.5 231 79.7
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 1.2e-100 370.2 232 79.3
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 1.6e-100 369.8 239 74.9
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 1.6e-100 369.8 237 76.4
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 2.1e-100 369.4 238 76.5
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 6.2e-100 367.9 232 78.4
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 8.0e-100 367.5 239 77.0
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 1.8e-99 366.3 238 76.5
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 2.3e-99 365.9 239 75.3
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 4.0e-99 365.2 232 78.9
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 5.2e-99 364.8 235 77.9
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 2.0e-98 362.8 238 76.5
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 2.6e-98 362.5 238 76.1
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 5.8e-98 361.3 238 73.5
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 9.8e-98 360.5 239 74.5
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 1.7e-97 359.8 237 75.9
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 2.2e-97 359.4 269 67.3
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.1e-96 357.1 234 76.5
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 4.1e-96 355.1 239 77.4
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 4.6e-95 351.7 268 67.9
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 6.0e-95 351.3 197 87.8
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 7.8e-95 350.9 239 75.7
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 2.1e-92 342.8 280 65.0
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 1.1e-91 340.5 231 74.5
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 1.8e-91 339.7 235 72.8
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 6.4e-89 331.3 239 72.8
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 1.1e-88 330.5 238 71.0
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 1.9e-88 329.7 229 73.8
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 1.6e-76 290.0 161 89.4
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.1e-75 287.3 236 63.1
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.1e-75 287.3 236 63.1
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 1.2e-74 283.9 239 61.9
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 2.1e-68 263.1 236 60.6
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.9e-64 250.0 225 55.6
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 2.0e-58 229.9 139 84.2
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 2.6e-58 229.6 136 84.6
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 3.3e-53 212.6 134 81.3
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 2.6e-50 203.0 199 54.8
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 5.7e-45 185.3 150 65.3
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 8.2e-44 181.4 253 41.9
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 2.0e-42 176.8 103 85.4
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.7e-31 139.8 195 44.6
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 5.7e-29 132.1 78 82.1
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 9.7e-29 131.3 90 72.2
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 1.5e-26 124.0 68 85.3
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 5.9e-26 122.1 73 82.2
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 6.7e-22 108.6 73 69.9
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 5.5e-16 89.0 54 74.1
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 2.7e-07 60.1 75 42.7
Cre03.g144284 Chlamydomonas reinhardtii HOM05D000563 ORTHO05D000536 2.7e-07 60.1 172 26.7
Os08g0523850 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D008184 1.0e-06 58.2 148 31.1
Cre04.g212100 Chlamydomonas reinhardtii HOM05D009399 ORTHO05D011328 1.4e-06 57.8 135 29.6


User provided reference genes

Program Settings