Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 5.1e-114 414.5 215 100.0
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 2.9e-93 345.5 231 77.9
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 2.9e-93 345.5 231 77.9
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 9.4e-92 340.5 231 77.1
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.6e-91 339.7 229 78.2
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 2.1e-91 339.3 232 76.3
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 3.6e-91 338.6 233 75.5
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 7.9e-91 337.4 232 77.2
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 1.4e-90 336.7 229 77.7
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.0e-90 335.5 232 75.4
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 3.9e-90 335.1 229 77.3
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 6.7e-90 334.3 229 77.3
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 6.7e-90 334.3 232 77.2
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.5e-89 333.2 230 77.0
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 2.0e-89 332.8 229 76.4
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 3.3e-89 332.0 231 76.2
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 9.7e-89 330.5 233 75.1
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 9.7e-89 330.5 233 73.8
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 9.7e-89 330.5 229 75.1
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.3e-88 330.1 233 75.1
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.3e-88 330.1 231 74.0
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 2.8e-88 328.9 226 77.0
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 3.7e-88 328.6 232 74.6
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 3.7e-88 328.6 234 75.6
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 4.8e-88 328.2 233 74.7
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 6.3e-88 327.8 229 73.8
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 8.2e-88 327.4 230 73.5
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 8.2e-88 327.4 232 74.6
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 8.2e-88 327.4 228 75.0
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 8.2e-88 327.4 227 77.1
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 1.1e-87 327.0 264 68.6
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 1.4e-87 326.6 232 76.3
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 1.8e-87 326.2 227 76.2
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 2.4e-87 325.9 216 79.2
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 4.1e-87 325.1 232 73.7
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 5.3e-87 324.7 233 73.0
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 7.0e-87 324.3 230 74.3
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 1.2e-86 323.6 231 74.0
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 1.2e-86 323.6 227 75.8
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 1.2e-86 323.6 233 73.0
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.2e-86 323.6 233 73.0
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.6e-86 323.2 232 73.3
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 1.6e-86 323.2 227 75.3
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 2.0e-86 322.8 224 77.2
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 3.5e-86 322.0 227 75.3
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 3.5e-86 322.0 227 75.3
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.5e-86 322.0 233 73.0
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.5e-86 322.0 233 73.0
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 4.5e-86 321.6 226 76.1
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.7e-86 320.9 233 72.1
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 7.7e-86 320.9 226 74.3
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 1.3e-85 320.1 226 74.3
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.3e-85 320.1 226 77.0
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 1.7e-85 319.7 229 75.1
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 2.2e-85 319.3 230 74.8
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.2e-85 319.3 236 72.9
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 5.0e-85 318.2 233 72.5
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 6.5e-85 317.8 226 73.9
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 8.5e-85 317.4 226 74.8
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 8.5e-85 317.4 229 72.5
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 1.1e-84 317.0 226 73.9
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 2.5e-84 315.8 258 67.4
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 2.5e-84 315.8 226 73.5
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 4.2e-84 315.1 228 72.4
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 4.2e-84 315.1 226 73.5
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 4.2e-84 315.1 226 73.5
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 4.2e-84 315.1 226 73.5
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 4.2e-84 315.1 226 73.5
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 4.2e-84 315.1 226 73.5
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 7.2e-84 314.3 233 72.5
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 9.4e-84 313.9 235 72.3
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 1.2e-83 313.5 228 72.4
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.2e-83 313.5 228 74.6
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 1.2e-83 313.5 228 74.6
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.6e-83 313.2 203 81.3
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 1.6e-83 313.2 231 71.9
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 2.1e-83 312.8 226 72.1
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 2.1e-83 312.8 230 71.3
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 2.1e-83 312.8 222 75.2
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 2.1e-83 312.8 231 71.9
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 2.7e-83 312.4 222 75.2
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 3.6e-83 312.0 223 73.5
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 3.6e-83 312.0 222 75.2
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 4.7e-83 311.6 227 72.7
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 4.7e-83 311.6 219 76.3
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 4.7e-83 311.6 227 72.7
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 8.0e-83 310.8 226 72.1
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 8.0e-83 310.8 226 72.6
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 1.0e-82 310.5 226 72.6
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 1.0e-82 310.5 228 72.8
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 1.4e-82 310.1 219 75.3
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 1.8e-82 309.7 219 75.3
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.8e-82 309.7 228 72.8
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 2.3e-82 309.3 227 70.9
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.3e-82 309.3 226 71.7
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 2.3e-82 309.3 226 71.7
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 2.3e-82 309.3 227 74.9
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 3.0e-82 308.9 228 71.5
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 3.0e-82 308.9 226 71.2
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 4.0e-82 308.5 222 73.9
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 6.7e-82 307.8 220 74.5
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 1.1e-81 307.0 224 71.4
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 1.5e-81 306.6 265 63.4
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 2.6e-81 305.8 219 74.4
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 3.3e-81 305.4 227 72.2
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 5.7e-81 304.7 223 73.5
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 9.7e-81 303.9 227 73.6
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 2.2e-80 302.8 219 73.1
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 3.7e-80 302.0 228 69.3
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 3.7e-80 302.0 230 70.0
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 4.8e-80 301.6 222 71.6
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 4.8e-80 301.6 219 72.1
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 2.4e-79 299.3 241 68.0
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 3.1e-79 298.9 218 72.9
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 3.1e-79 298.9 228 69.7
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 9.1e-79 297.4 264 62.5
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.6e-78 296.6 224 72.8
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 2.7e-78 295.8 225 70.7
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 1.0e-77 293.9 285 60.4
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 2.5e-76 289.3 221 68.8
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 5.5e-76 288.1 220 70.9
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 7.2e-76 287.7 209 72.2
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 7.2e-76 287.7 209 72.2
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.2e-75 287.0 234 65.0
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 6.1e-75 284.6 276 60.1
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 8.0e-75 284.3 202 73.8
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.2e-73 280.4 200 73.5
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 4.4e-73 278.5 273 59.7
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 1.1e-71 273.9 199 73.4
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.5e-65 253.4 228 58.8
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 1.5e-65 253.4 201 64.7
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 7.5e-65 251.1 210 61.4
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 5.4e-63 245.0 222 61.3
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 7.7e-62 241.1 202 60.9
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 1.3e-61 240.4 184 69.6
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.0e-58 230.7 233 57.1
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.5e-52 209.5 163 69.3
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 1.2e-51 207.2 165 65.5
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 2.3e-50 203.0 196 58.2
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.5e-49 200.3 196 57.1
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.1e-44 184.1 214 47.7
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 8.3e-40 167.9 227 43.6
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 1.1e-39 167.5 218 45.9
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 2.5e-36 156.4 130 63.1
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 9.5e-36 154.5 152 54.6
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 2.1e-35 153.3 120 66.7
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 4.9e-32 142.1 209 43.5
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 6.4e-32 141.7 115 62.6
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 3.8e-24 115.9 70 82.9
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 7.1e-23 111.7 65 81.5
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.7e-21 107.1 64 85.9
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 2.5e-20 103.2 59 88.1
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 1.9e-15 87.0 119 47.9
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 3.1e-10 69.7 43 79.1
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 1.5e-09 67.4 51 68.6


User provided reference genes

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