Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 7.3e-40 166.8 84 100.0
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 2.8e-23 111.7 68 80.9
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.2e-21 106.3 68 76.5
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.2e-21 106.3 68 76.5
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 2.0e-21 105.5 69 71.0
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 4.4e-21 104.4 69 73.9
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 1.3e-20 102.8 68 73.5
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 3.2e-19 98.2 80 60.0
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 3.2e-19 98.2 80 60.0
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 4.1e-19 97.8 68 70.6
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 1.2e-18 96.3 69 66.7
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 2.7e-18 95.1 64 71.9
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.5e-18 94.7 68 69.1
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 3.5e-18 94.7 68 64.7
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 3.5e-18 94.7 68 64.7
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 7.8e-18 93.6 66 69.7
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 2.3e-17 92.0 63 69.8
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 2.3e-17 92.0 68 63.2
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 2.3e-17 92.0 69 65.2
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 2.3e-17 92.0 68 66.2
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 2.3e-17 92.0 68 66.2
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 3.0e-17 91.7 68 66.2
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 3.0e-17 91.7 68 66.2
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 5.1e-17 90.9 63 69.8
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 6.6e-17 90.5 63 69.8
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 6.6e-17 90.5 68 63.2
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 8.6e-17 90.1 68 60.3
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 8.6e-17 90.1 64 65.6
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.1e-16 89.7 69 60.9
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.5e-16 89.4 69 59.4
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.5e-16 89.4 64 65.6
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.5e-16 88.6 64 64.1
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 4.3e-16 87.8 68 61.8
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 4.3e-16 87.8 63 69.8
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 4.3e-16 87.8 64 64.1
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 4.3e-16 87.8 63 66.7
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 4.3e-16 87.8 63 66.7
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 5.6e-16 87.4 64 64.1
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 7.3e-16 87.0 62 69.4
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 7.3e-16 87.0 63 63.5
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 7.3e-16 87.0 64 62.5
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 7.3e-16 87.0 68 63.2
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 7.3e-16 87.0 63 66.7
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.2e-15 86.3 63 68.3
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.2e-15 86.3 64 65.6
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.6e-15 85.9 62 67.7
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 1.6e-15 85.9 70 61.4
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 1.6e-15 85.9 68 63.2
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 3.6e-15 84.7 63 63.5
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 3.6e-15 84.7 68 55.9
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 3.6e-15 84.7 68 55.9
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 4.7e-15 84.3 67 59.7
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 4.7e-15 84.3 68 61.8
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 4.7e-15 84.3 68 52.9
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 6.2e-15 84.0 67 61.2
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 6.2e-15 84.0 70 57.1
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 6.2e-15 84.0 63 65.1
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 8.1e-15 83.6 68 60.3
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 8.1e-15 83.6 67 61.2
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 8.1e-15 83.6 63 60.3
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 1.1e-14 83.2 63 65.1
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 1.4e-14 82.8 63 58.7
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.4e-14 82.8 63 63.5
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 1.8e-14 82.4 63 65.1
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 3.1e-14 81.6 68 60.3
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 3.1e-14 81.6 68 55.9
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 3.1e-14 81.6 68 55.9
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 3.1e-14 81.6 63 63.5
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 4.0e-14 81.3 64 60.9
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 5.2e-14 80.9 63 61.9
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 1.5e-13 79.3 74 51.4
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.5e-13 79.3 68 54.4
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 2.0e-13 79.0 63 57.1
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 2.6e-13 78.6 68 60.3
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 2.6e-13 78.6 73 54.8
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 3.4e-13 78.2 63 60.3
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 3.4e-13 78.2 63 58.7
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 4.4e-13 77.8 68 52.9
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 4.4e-13 77.8 66 60.6
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 5.8e-13 77.4 63 60.3
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 5.8e-13 77.4 63 60.3
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 5.8e-13 77.4 63 60.3
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 9.9e-13 76.6 68 58.8
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 9.9e-13 76.6 73 53.4
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 9.9e-13 76.6 73 53.4
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 9.9e-13 76.6 73 53.4
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 1.7e-12 75.9 68 52.9
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.7e-12 75.9 56 69.6
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 1.7e-12 75.9 63 57.1
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.7e-12 75.9 68 55.9
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.7e-12 75.9 68 55.9
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 2.2e-12 75.5 69 56.5
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 4.9e-12 74.3 68 57.4
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 6.4e-12 73.9 63 54.0
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 6.4e-12 73.9 69 55.1
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.1e-11 73.2 56 67.9
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 2.4e-11 72.0 62 53.2
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 3.2e-11 71.6 66 50.0
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 2.1e-10 68.9 68 48.5
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 6.0e-10 67.4 63 49.2
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 4.3e-08 61.2 42 73.8
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 9.6e-08 60.1 61 50.8
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 4.7e-07 57.8 52 57.7
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 4.0e-06 54.7 51 54.9
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 6.9e-06 53.9 68 48.5
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 9.0e-06 53.5 57 49.1


User provided reference genes

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