Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 0.0e+00 1402.5 789 100.0
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 3.8e-207 725.7 661 62.5
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 5.0e-207 725.3 693 61.2
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 3.3e-203 712.6 614 63.4
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 2.4e-201 706.4 793 54.0
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 2.6e-187 659.8 879 49.6
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.2e-186 656.8 669 53.8
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 4.8e-186 655.6 695 52.4
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 1.4e-185 654.1 686 52.9
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 1.8e-185 653.7 692 54.0
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 3.4e-179 632.9 689 51.8
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 2.8e-173 613.2 776 46.3
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 2.0e-168 597.0 685 50.1
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 2.1e-165 587.0 688 48.8
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.4e-164 584.3 708 49.7
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 8.9e-164 581.6 666 47.9
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 9.2e-161 571.6 747 49.1
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 4.6e-160 569.3 660 50.3
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 6.8e-156 555.4 730 47.3
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 3.4e-155 553.1 868 43.5
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 4.9e-154 549.3 718 47.1
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 6.4e-154 548.9 718 47.1
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.4e-153 547.7 718 47.2
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 2.1e-152 543.9 706 47.7
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 6.0e-152 542.3 681 48.8
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.0e-151 541.6 679 46.8
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.3e-151 541.2 645 48.4
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 6.6e-151 538.9 690 48.3
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.5e-150 537.7 712 45.9
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 7.3e-150 535.4 748 47.6
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 1.8e-148 530.8 733 44.9
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 1.5e-147 527.7 689 49.2
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 2.6e-147 526.9 704 46.4
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 4.4e-147 526.2 646 48.1
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 7.5e-147 525.4 815 43.2
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.2e-146 523.9 699 47.8
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 1.2e-144 518.1 725 45.2
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 7.8e-144 515.4 676 46.6
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 8.6e-143 511.9 655 45.8
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 1.9e-142 510.8 831 40.2
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 4.3e-142 509.6 691 46.2
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 3.6e-141 506.5 732 46.4
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 1.8e-140 504.2 833 41.2
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 4.4e-139 499.6 704 45.6
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 2.9e-138 496.9 729 45.0
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 1.3e-135 488.0 737 45.3
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 5.6e-134 482.6 732 41.5
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 1.1e-132 478.4 717 44.9
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 3.4e-131 473.4 743 43.6
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.3e-130 471.5 707 46.3
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.5e-126 458.0 704 41.5
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 4.3e-126 456.4 667 41.5
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.3e-125 454.9 653 42.1
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 2.1e-125 454.1 768 43.1
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 4.8e-125 453.0 702 40.9
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 1.1e-124 451.8 721 41.2
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 1.4e-124 451.4 698 40.7
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 5.8e-123 446.0 687 41.6
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 1.3e-122 444.9 688 41.4
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 2.9e-122 443.7 676 44.5
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 5.1e-119 433.0 688 40.8
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 5.1e-119 433.0 794 40.1
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 5.1e-119 433.0 660 42.7
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 2.5e-118 430.6 752 38.7
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 3.3e-118 430.3 873 38.1
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 4.3e-118 429.9 862 36.2
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 7.4e-118 429.1 743 42.0
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 9.6e-118 428.7 678 40.3
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.6e-117 427.9 745 37.7
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.6e-117 427.9 563 43.3
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 2.8e-117 427.2 681 42.1
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 3.7e-117 426.8 713 41.4
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 8.1e-117 425.6 693 40.0
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.8e-116 424.5 753 40.8
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 2.4e-116 424.1 653 40.4
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 2.4e-116 424.1 667 41.4
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 3.1e-116 423.7 701 40.9
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 5.3e-116 422.9 815 37.4
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 2.0e-115 421.0 719 41.0
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 5.8e-115 419.5 794 39.0
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 1.7e-114 417.9 915 34.9
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 8.4e-114 415.6 669 40.8
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 8.4e-114 415.6 684 42.3
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 1.9e-113 414.5 684 40.1
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 3.5e-112 410.2 725 37.5
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 1.0e-111 408.7 789 39.2
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.5e-110 404.8 660 40.5
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 4.3e-110 403.3 783 36.1
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 4.3e-110 403.3 745 36.6
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 7.4e-110 402.5 640 39.8
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 3.7e-109 400.2 661 40.5
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 6.2e-109 399.4 649 39.9
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 6.9e-108 396.0 658 39.2
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 2.6e-107 394.0 756 38.2
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 1.9e-105 387.9 666 38.0
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 2.7e-104 384.0 707 38.2
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 2.7e-104 384.0 698 39.3
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 1.0e-103 382.1 683 39.7
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 1.0e-103 382.1 683 39.7
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 1.8e-103 381.3 683 39.8
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 3.9e-103 380.2 658 38.4
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 2.6e-99 367.5 648 40.9
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 2.9e-98 364.0 626 38.2
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 2.7e-96 357.5 716 36.5
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.1e-94 352.1 741 36.7
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.8e-93 347.4 648 36.4
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 2.8e-93 347.4 837 33.3
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 2.4e-92 344.4 852 31.5
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 9.1e-92 342.4 512 44.5
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 3.3e-78 297.4 335 49.6
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.3e-77 295.4 649 33.4
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.1e-73 282.3 715 34.1
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 9.4e-73 279.3 693 30.7
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 4.8e-69 266.9 570 33.9
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.8e-68 265.0 306 47.7
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 1.1e-65 255.8 684 30.1
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.8e-63 248.4 429 43.8
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.8e-60 238.4 279 44.8
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 7.2e-57 226.5 294 47.6
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 8.0e-56 223.0 241 53.9
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.4e-47 195.7 681 27.3
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.6e-46 191.4 183 55.7
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 3.2e-44 184.5 173 51.4
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 6.6e-42 176.8 177 57.6
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 2.8e-40 171.4 219 42.5
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 3.6e-40 171.0 455 33.4
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 6.2e-40 170.2 154 56.5
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 2.3e-39 168.3 395 36.5
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 5.6e-33 147.1 151 49.0
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.1e-25 122.9 223 35.4
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 1.9e-25 122.1 298 32.9
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 7.6e-22 110.2 727 22.8
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.0e-18 99.8 282 30.9
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 3.0e-18 98.2 140 38.6
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 3.9e-18 97.8 280 30.0
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 2.5e-17 95.1 182 35.7
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 4.2e-12 77.8 76 56.6
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 1.3e-10 72.8 65 50.8
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 1.1e-07 63.2 81 48.1
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 3.1e-07 61.6 91 37.4
Os01g0756000 Oryza sativa ssp. japonica HOM05D056051 ORTHO05D049612 6.9e-07 60.5 174 32.2
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 9.0e-07 60.1 62 50.0
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 2.6e-06 58.5 159 30.2
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 9.9e-06 56.6 55 47.3


User provided reference genes

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