Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 0.0e+00 1706.8 879 100.0
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1196.8 883 71.6
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1193.7 885 71.9
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1193.3 885 71.8
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1185.2 883 70.8
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1181.8 887 71.3
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1161.0 884 69.2
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1152.9 884 69.6
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1142.9 882 68.4
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1142.1 883 68.5
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 0.0e+00 1126.3 888 67.1
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1125.9 842 70.8
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 0.0e+00 1111.7 877 66.6
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 0.0e+00 1111.3 883 66.4
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 0.0e+00 1110.9 876 66.4
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 0.0e+00 1103.6 879 66.7
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 0.0e+00 1101.3 883 66.7
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 0.0e+00 1101.3 877 66.0
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 0.0e+00 1100.5 878 66.1
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1097.8 883 66.6
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 0.0e+00 1095.1 890 66.9
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1090.1 883 65.3
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 0.0e+00 1088.6 850 67.3
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 0.0e+00 1087.4 887 66.3
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 0.0e+00 1084.3 849 68.0
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 0.0e+00 1083.6 880 66.1
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 0.0e+00 1083.2 883 66.0
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 0.0e+00 1080.5 884 66.3
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1078.9 886 65.3
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1077.0 886 65.8
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1075.1 886 65.2
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 6.0e-312 1073.5 883 65.8
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 1.2e-311 1072.8 886 64.9
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 4.2e-311 1071.2 886 64.8
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 4.2e-311 1071.2 894 64.2
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 6.6e-309 1063.9 886 66.0
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 2.5e-308 1062.0 882 65.4
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 5.6e-308 1060.8 877 66.7
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 9.5e-308 1060.1 878 66.6
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 3.1e-306 1055.0 891 63.7
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 5.2e-306 1054.3 888 63.9
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 6.8e-306 1053.9 885 64.3
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 8.9e-306 1053.5 881 64.4
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 1.3e-304 1049.7 884 64.8
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 6.4e-304 1047.3 883 64.4
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 1.1e-303 1046.6 881 64.9
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 3.2e-303 1045.0 883 62.7
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 1.0e-301 1040.0 883 63.9
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 5.0e-301 1037.7 887 63.9
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 6.6e-301 1037.3 883 62.2
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 6.6e-301 1037.3 886 62.3
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 6.2e-299 1030.8 883 63.9
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 6.2e-299 1030.8 876 65.0
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 8.0e-299 1030.4 886 63.4
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 4.0e-298 1028.1 854 65.6
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 2.2e-296 1022.3 882 62.6
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 2.2e-296 1022.3 885 62.6
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 5.4e-295 1017.7 835 64.6
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 1.5e-292 1009.6 884 62.8
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 2.5e-292 1008.8 888 60.5
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 3.3e-292 1008.4 899 61.3
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 3.3e-292 1008.4 882 63.5
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 6.2e-291 1004.2 882 63.5
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 1.8e-290 1002.7 882 62.5
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 6.8e-290 1000.7 879 61.7
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 7.1e-287 990.7 884 60.2
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 1.5e-284 983.0 885 61.0
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 7.3e-284 980.7 896 60.6
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 2.1e-283 979.2 888 59.6
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 2.8e-283 978.8 885 61.1
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 3.6e-283 978.4 886 60.9
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 4.4e-281 971.5 896 59.2
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 2.2e-280 969.1 896 59.6
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 4.9e-280 968.0 885 59.9
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 1.1e-279 966.8 923 58.5
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 1.1e-279 966.8 885 60.1
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 1.4e-279 966.5 887 60.7
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 2.4e-279 965.7 886 60.7
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 9.2e-279 963.8 891 60.3
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 1.2e-278 963.4 886 60.5
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 2.1e-278 962.6 888 60.2
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 3.1e-274 948.7 838 62.1
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 6.2e-267 924.5 882 58.6
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 1.0e-261 907.1 841 59.9
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 3.0e-261 905.6 844 60.3
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 4.3e-260 901.7 785 63.2
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 2.1e-259 899.4 882 56.8
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 1.8e-258 896.3 887 56.8
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 2.9e-256 889.0 779 63.9
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 3.5e-254 882.1 893 55.5
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 1.6e-251 873.2 883 53.5
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 1.9e-239 833.2 884 52.0
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 3.6e-238 828.9 841 56.5
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 5.3e-234 815.1 721 64.1
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 1.3e-232 810.4 889 50.1
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 1.1e-226 790.8 873 52.6
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 5.5e-223 778.5 679 63.6
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 1.2e-198 697.6 785 50.6
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 6.8e-173 612.1 524 63.5
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 2.8e-158 563.5 769 45.0
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 1.4e-154 551.2 425 65.6
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 1.4e-133 481.5 849 37.3
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 3.4e-132 476.9 887 36.2
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 5.7e-127 459.5 868 37.1
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 1.0e-99 369.0 343 58.0
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 7.7e-92 342.8 1019 29.9
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 3.9e-51 207.6 189 61.9
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 2.7e-28 131.7 89 68.5
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 6.2e-25 120.6 85 70.6
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 1.3e-19 102.8 929 21.5
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 5.0e-14 84.3 57 70.2
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 7.2e-13 80.5 48 77.1
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 2.7e-12 78.6 57 64.9
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 3.6e-12 78.2 53 69.8
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 3.6e-12 78.2 107 42.1
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 7.9e-12 77.0 57 61.4
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 3.9e-11 74.7 602 21.8
Lsat_1_v5_gn_4_67501 Lactuca sativa HOM05D001373 ORTHO05D001330 4.3e-10 71.2 45 75.6
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 6.3e-09 67.4 80 55.0
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 1.8e-08 65.9 104 38.5
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 2.4e-08 65.5 99 46.5
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 1.5e-07 62.8 73 41.1
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 1.5e-07 62.8 50 58.0
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 1.3e-06 59.7 49 53.1


User provided reference genes

Program Settings