Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 6.7e-148 527.3 267 100.0
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 3.8e-127 458.4 268 87.3
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 3.8e-127 458.4 268 88.4
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 2.5e-126 455.7 268 87.7
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 3.2e-126 455.3 268 85.4
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 5.5e-126 454.5 267 86.5
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 7.2e-126 454.1 263 87.8
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 9.4e-126 453.8 263 87.1
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 1.6e-125 453.0 263 87.1
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.4e-124 449.9 269 87.0
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 4.0e-124 448.4 263 85.9
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.8e-124 447.6 268 84.7
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.2e-123 446.8 268 85.8
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.5e-123 446.4 268 86.2
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.7e-123 444.5 268 84.3
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 9.8e-123 443.7 263 84.8
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 1.7e-122 443.0 268 85.1
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 2.2e-122 442.6 268 84.3
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 3.7e-122 441.8 268 85.1
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 3.7e-122 441.8 268 85.4
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 4.9e-122 441.4 251 89.2
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.3e-122 441.0 263 84.8
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.1e-121 440.3 268 84.7
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.4e-121 439.9 268 84.7
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 5.4e-121 438.0 262 84.0
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 7.0e-121 437.6 263 84.0
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 9.1e-121 437.2 268 83.6
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 9.1e-121 437.2 268 84.0
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.2e-120 436.8 263 85.2
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 1.2e-120 436.8 263 84.0
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 2.7e-120 435.6 269 84.0
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.7e-120 435.6 263 84.8
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 2.7e-120 435.6 263 85.6
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.5e-120 435.3 264 84.8
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.5e-120 434.9 263 84.4
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 4.5e-120 434.9 268 84.0
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 7.7e-120 434.1 262 83.6
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 7.7e-120 434.1 263 84.8
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 1.3e-119 433.3 268 82.8
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.3e-119 433.3 263 84.0
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.7e-119 433.0 263 83.7
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 6.6e-119 431.0 268 84.7
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 8.6e-119 430.6 268 83.2
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 1.1e-118 430.3 269 83.3
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.3e-118 428.7 256 86.7
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 5.5e-118 427.9 263 82.5
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 5.5e-118 427.9 268 83.6
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.2e-117 426.8 270 84.1
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.2e-117 426.8 263 82.1
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 2.8e-117 425.6 263 82.5
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 3.6e-117 425.2 308 74.7
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.0e-116 423.7 268 81.3
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 1.0e-116 423.7 268 81.7
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 1.0e-116 423.7 266 82.3
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.4e-116 423.3 269 84.0
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 1.8e-116 422.9 263 82.5
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.0e-116 422.2 268 82.8
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 3.0e-116 422.2 275 80.7
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 5.2e-116 421.4 268 82.8
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.8e-116 421.0 263 82.1
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 8.9e-116 420.6 267 80.5
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 1.2e-115 420.2 268 82.1
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 3.4e-115 418.7 267 82.0
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 4.4e-115 418.3 268 80.6
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 7.5e-115 417.5 267 80.5
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 9.8e-115 417.2 264 82.2
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 1.3e-114 416.8 269 81.8
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 1.7e-114 416.4 251 83.3
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 1.7e-114 416.4 266 81.2
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.9e-114 414.8 265 79.2
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.1e-113 413.7 268 81.7
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.4e-113 413.3 268 80.2
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 1.4e-113 413.3 276 80.1
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.8e-113 412.9 251 82.5
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 2.4e-113 412.5 269 79.2
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 3.2e-113 412.1 268 79.9
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.1e-113 411.8 263 80.6
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 5.4e-113 411.4 251 82.9
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 1.6e-112 409.8 268 80.2
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.7e-112 409.1 258 81.4
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 7.8e-112 407.5 263 78.3
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.3e-111 406.8 263 78.3
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 2.9e-111 405.6 263 79.5
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 8.6e-111 404.1 268 79.9
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.1e-110 403.7 263 79.8
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 1.5e-110 403.3 255 80.8
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.5e-110 403.3 269 79.9
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 1.9e-110 402.9 291 74.2
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 5.6e-110 401.4 268 77.2
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 5.6e-110 401.4 263 79.5
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 7.3e-110 401.0 263 76.8
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.2e-109 400.2 264 77.7
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.6e-109 399.8 294 72.4
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 6.2e-109 397.9 268 76.9
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 1.4e-108 396.7 268 76.5
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 2.0e-107 392.9 279 74.9
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 2.0e-107 392.9 260 78.1
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.3e-106 390.2 251 78.9
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 2.9e-106 389.0 239 82.0
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 3.7e-106 388.7 285 74.0
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 1.6e-104 383.3 321 66.7
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 3.5e-104 382.1 265 76.2
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 4.6e-104 381.7 268 76.1
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 3.9e-103 378.6 261 74.7
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 5.0e-103 378.3 267 74.9
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 6.6e-103 377.9 253 77.5
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.2e-101 373.6 264 73.9
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.6e-101 373.2 271 72.7
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.6e-101 373.2 257 75.9
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 3.6e-101 372.1 264 74.2
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.1e-100 370.5 257 72.0
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.1e-100 370.5 257 72.0
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.8e-100 369.8 264 73.1
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 4.0e-100 368.6 264 73.1
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 6.8e-100 367.9 264 72.7
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 1.5e-99 366.7 265 74.0
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.0e-99 366.3 264 73.1
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 3.4e-99 365.5 264 73.1
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 4.4e-99 365.2 264 73.5
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 1.3e-98 363.6 264 72.7
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.9e-98 362.5 261 73.6
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 2.9e-98 362.5 264 72.7
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 4.9e-98 361.7 269 71.0
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 8.3e-98 360.9 264 72.0
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 1.4e-97 360.1 275 72.4
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.9e-97 359.8 264 72.0
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 7.1e-97 357.8 228 80.7
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 1.6e-96 356.7 267 72.7
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 3.5e-96 355.5 264 72.3
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.5e-96 355.5 264 73.1
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 1.0e-95 354.0 235 74.9
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.3e-95 353.6 283 68.6
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.7e-95 353.2 264 68.6
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 2.3e-95 352.8 265 70.2
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 1.9e-94 349.7 258 70.2
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 3.1e-92 342.4 263 70.3
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 1.2e-91 340.5 258 69.4
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.9e-90 335.9 261 68.6
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 1.1e-89 334.0 207 84.1
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.4e-89 332.8 254 68.5
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 5.4e-89 331.6 267 65.9
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 7.8e-88 327.8 200 84.5
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 5.1e-87 325.1 265 67.2
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 6.6e-87 324.7 265 65.3
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 2.0e-83 313.2 265 64.9
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 3.4e-83 312.4 242 69.4
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 4.9e-82 308.5 265 64.2
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.1e-81 307.4 199 78.4
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.9e-81 306.6 264 62.5
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.1e-73 280.8 190 76.3
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.0e-71 274.2 144 93.1
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 9.9e-67 257.7 170 77.6
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 1.9e-41 173.7 212 49.5
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 3.3e-38 162.9 292 40.4
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 4.3e-38 162.5 193 50.3
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 7.4e-38 161.8 107 80.4
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 7.4e-38 161.8 239 42.7
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.1e-36 156.4 122 71.3
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.3e-31 140.2 74 97.3
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.0e-30 137.1 93 74.2
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.7e-26 124.0 76 81.6
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 4.2e-25 119.4 234 37.6
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 5.9e-19 99.0 167 40.1
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.1e-16 90.5 91 53.8
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 2.7e-16 90.1 182 34.6
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 9.1e-12 75.1 41 78.0
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.5e-11 72.8 51 68.6
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.0e-10 71.6 41 78.0
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 1.0e-10 71.6 65 60.0
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 2.9e-10 70.1 42 73.8
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 2.7e-08 63.5 138 34.8
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 3.0e-07 60.1 86 36.0
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 5.7e-06 55.8 32 87.5


User provided reference genes

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