Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 0.0e+00 2428.3 1259 100.0
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.3e-283 979.5 1379 48.7
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 4.0e-259 899.0 1401 46.0
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 3.4e-258 896.0 1401 45.8
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 6.7e-206 722.2 1383 40.1
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 2.6e-189 667.2 1406 40.5
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 2.1e-175 620.9 1383 38.0
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 7.0e-171 605.9 1186 39.7
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 2.2e-164 584.3 1346 37.8
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 4.6e-162 576.6 1242 38.4
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 2.3e-161 574.3 1317 37.6
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.9e-160 571.2 1321 37.5
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 4.3e-160 570.1 1378 37.0
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 3.6e-159 567.0 1374 36.8
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 8.9e-158 562.4 1358 36.6
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 9.8e-157 558.9 1290 36.7
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 4.9e-156 556.6 1278 36.7
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 7.8e-154 549.3 1430 35.5
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.1e-152 545.4 1299 36.7
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 2.5e-152 544.3 1372 35.9
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.3e-150 537.7 1338 35.8
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 8.9e-150 535.8 1351 34.9
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 6.4e-148 529.6 1393 36.0
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.0e-145 522.3 1189 37.6
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.3e-145 521.9 1321 36.1
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 3.0e-145 520.8 1354 35.1
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 2.5e-144 517.7 1387 33.5
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 3.3e-144 517.3 1452 34.0
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 6.2e-143 513.1 1452 33.8
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 4.0e-142 510.4 1393 34.6
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 2.6e-141 507.7 1281 36.5
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.3e-140 505.4 1388 34.4
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 2.4e-139 501.1 1445 34.3
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 3.9e-137 493.8 1191 36.8
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 2.5e-136 491.1 1363 34.6
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 2.1e-135 488.0 1394 36.1
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 1.1e-134 485.7 1317 35.6
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.4e-134 485.3 1364 34.7
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 2.4e-134 484.6 1395 34.1
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 2.6e-133 481.1 1309 34.1
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 1.3e-132 478.8 1399 34.5
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 4.9e-132 476.9 1331 35.5
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 4.2e-131 473.8 1363 34.6
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 1.6e-130 471.9 1377 34.3
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 1.3e-129 468.8 1318 33.8
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 7.3e-128 463.0 1460 33.0
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 3.8e-124 450.7 1397 32.9
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 1.9e-123 448.4 1370 33.7
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 9.3e-123 446.0 1407 32.7
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 3.9e-121 440.7 1376 34.3
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.2e-117 429.1 1378 33.5
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 1.5e-117 428.7 1380 33.6
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.0e-117 428.3 1380 33.3
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 8.4e-116 422.9 1380 33.4
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 4.6e-114 417.2 1331 32.4
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 1.4e-110 405.6 1308 33.1
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 6.9e-102 376.7 1147 33.0
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 6.9e-102 376.7 1322 31.5
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 1.2e-101 375.9 1139 33.6
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 1.2e-101 375.9 1399 31.3
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.0e-100 372.9 911 36.2
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 1.9e-99 368.6 1397 29.8
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 6.7e-97 360.1 547 45.5
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 1.8e-94 352.1 1367 30.4
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.6e-93 348.2 1078 33.1
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 2.3e-89 335.1 1197 31.5
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 2.6e-85 321.6 724 37.3
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 4.5e-85 320.9 1395 30.3
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 1.3e-84 319.3 1191 30.0
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 7.0e-78 297.0 295 57.3
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 7.5e-72 276.9 1137 30.6
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 9.1e-70 270.0 1281 28.8
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 1.2e-69 269.6 1122 30.9
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.6e-69 269.2 1446 27.9
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 3.2e-67 261.5 1241 29.2
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 5.2e-57 227.6 1299 27.8
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 3.3e-51 208.4 789 31.7
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 2.6e-48 198.7 1233 27.7
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.3e-47 196.4 755 29.8
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 7.8e-45 187.2 770 29.6
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 8.0e-42 177.2 764 29.5
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 1.1e-38 166.8 682 30.4
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.4e-38 166.4 317 38.5
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 2.4e-38 165.6 1242 27.7
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 5.1e-36 157.9 758 29.7
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 1.9e-35 156.0 851 27.7
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 3.3e-35 155.2 1264 26.0
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 4.3e-35 154.8 906 27.8
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.1e-33 150.2 746 27.6
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 6.8e-33 147.5 343 37.3
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 1.2e-32 146.7 1297 25.4
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.0e-32 146.0 711 28.8
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 2.6e-32 145.6 1258 26.2
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 3.7e-31 141.7 1137 26.3
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 2.7e-29 135.6 359 35.7
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.5e-29 135.2 1136 24.6
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 1.3e-28 133.3 357 34.5
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.2e-26 126.7 398 31.7
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 4.7e-26 124.8 844 28.0
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 2.4e-25 122.5 1278 24.4
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 2.4e-25 122.5 1221 24.9
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.2e-25 121.3 411 30.9
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.2e-24 120.2 720 27.1
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 4.4e-24 118.2 1240 24.8
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 2.9e-23 115.5 278 38.1
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 2.1e-21 109.4 422 30.6
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.3e-20 106.7 464 28.4
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 5.1e-20 104.8 1081 25.9
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.7e-20 104.0 218 36.7
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 3.3e-19 102.1 404 29.7
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 3.6e-18 98.6 1222 23.2
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 6.2e-18 97.8 422 30.8
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.2e-18 97.8 350 30.0
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 5.8e-16 91.3 472 30.5
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 1.7e-15 89.7 1092 23.5
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 2.2e-15 89.4 1068 23.2
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 3.8e-15 88.6 1064 23.5
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 2.4e-14 85.9 716 26.8
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 4.6e-13 81.6 668 27.1
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.1e-12 78.2 186 34.9
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 6.6e-12 77.8 454 28.0
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 6.6e-12 77.8 723 26.1
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 8.7e-12 77.4 139 39.6
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 5.6e-11 74.7 1186 23.6
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 3.6e-10 72.0 490 28.4
PGSC0003DMG400039757 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.9e-08 63.9 176 35.2
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 2.2e-07 62.8 46 67.4
Solyc04g010180.4 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.9e-07 62.4 105 40.0
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 4.9e-07 61.6 765 26.5
COL.COLO4_10625 Corchorus olitorius HOM05D000283 ORTHO05D006673 4.2e-06 58.5 43 65.1
COL.COLO4_26050 Corchorus olitorius HOM05D000283 ORTHO05D006673 4.2e-06 58.5 43 65.1
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 4.2e-06 58.5 175 30.3
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 7.1e-06 57.8 662 23.1


User provided reference genes

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