Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A8T29 Lonicera japonica HOM05D003542 ORTHO05D038869 3.8e-34 147.5 71 100.0
DCAR_004534 Daucus carota HOM05D003542 ORTHO05D004799 1.2e-16 89.4 53 79.2
Peaxi162Scf00053g00006 Petunia axillaris HOM05D003542 ORTHO05D004799 5.8e-14 80.5 56 71.4
Solyc08g075340.3 Solanum lycopersicum HOM05D003542 ORTHO05D004799 5.8e-14 80.5 56 73.2
Lsat_1_v5_gn_3_20301 Lactuca sativa HOM05D003542 ORTHO05D004799 7.5e-14 80.1 50 68.0
Sopen08g023950 Solanum pennellii HOM05D003542 ORTHO05D004799 7.5e-14 80.1 56 73.2
CAN.G998.13 Capsicum annuum HOM05D003542 ORTHO05D004799 1.7e-13 79.0 56 71.4
ECA246G1310 Erigeron canadensis HOM05D003542 ORTHO05D004799 1.4e-12 75.9 46 71.7
Sp4g17820 Schrenkiella parvula HOM05D003542 ORTHO05D004799 4.1e-12 74.3 54 68.5
Aa31LG9G15750 Aethionema arabicum HOM05D003542 ORTHO05D004799 5.4e-12 73.9 54 66.7
CARHR129800 Cardamine hirsuta HOM05D003542 ORTHO05D004799 5.4e-12 73.9 54 68.5
HanXRQChr06g0173181 Helianthus annuus HOM05D003542 ORTHO05D004799 5.4e-12 73.9 50 64.0
BcaB02g09412 Brassica carinata HOM05D003542 ORTHO05D004799 7.1e-12 73.6 54 68.5
HanXRQChr17g0537321 Helianthus annuus HOM05D003542 ORTHO05D004799 7.1e-12 73.6 50 62.0
Hma1.2p1_0839F.1_g226340 Hydrangea macrophylla HOM05D003542 ORTHO05D004799 7.1e-12 73.6 48 77.1
Ciclev10011269m.g Citrus clementina HOM05D003542 ORTHO05D004799 9.2e-12 73.2 53 64.2
BcaB06g28850 Brassica carinata HOM05D003542 ORTHO05D004799 1.2e-11 72.8 54 66.7
A04p27010 Brassica napus HOM05D003542 ORTHO05D004799 1.2e-11 72.8 54 66.7
A05p10120 Brassica napus HOM05D003542 ORTHO05D004799 1.2e-11 72.8 54 66.7
BraA04t18202Z Brassica rapa HOM05D003542 ORTHO05D004799 1.2e-11 72.8 54 66.7
BraA05t19953Z Brassica rapa HOM05D003542 ORTHO05D004799 1.2e-11 72.8 54 66.7
Thhalv10016368m.g Eutrema salsugineum HOM05D003542 ORTHO05D004799 1.2e-11 72.8 54 66.7
MSTRG.25746 Avicennia marina HOM05D003542 ORTHO05D004799 1.6e-11 72.4 50 70.0
BcaC02g07760 Brassica carinata HOM05D003542 ORTHO05D004799 1.6e-11 72.4 54 64.8
C04p64420 Brassica napus HOM05D003542 ORTHO05D004799 1.6e-11 72.4 54 64.8
BolC4t27926H Brassica oleracea HOM05D003542 ORTHO05D004799 1.6e-11 72.4 54 64.8
QL12p003762 Quercus lobata HOM05D003542 ORTHO05D004799 1.6e-11 72.4 56 62.5
Nitab4.5_0002603g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 2.1e-11 72.0 38 86.8
Oeu033614.1 Olea europaea HOM05D003542 ORTHO05D004799 2.1e-11 72.0 41 80.5
Nitab4.5_0006371g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 3.5e-11 71.2 37 89.2
AL4G31650 Arabidopsis lyrata HOM05D003542 ORTHO05D004799 4.6e-11 70.9 54 66.7
BcaC02g11676 Brassica carinata HOM05D003542 ORTHO05D004799 6.0e-11 70.5 54 64.8
BcaC02g11677 Brassica carinata HOM05D003542 ORTHO05D004799 6.0e-11 70.5 54 64.8
C04p12510 Brassica napus HOM05D003542 ORTHO05D004799 6.0e-11 70.5 54 64.8
BolC4t22898H Brassica oleracea HOM05D003542 ORTHO05D004799 6.0e-11 70.5 54 64.8
Manes.17G001100 Manihot esculenta HOM05D003542 ORTHO05D004799 6.0e-11 70.5 62 51.6
THA.LOC104798529 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 6.0e-11 70.5 56 60.7
Carub.0004s1730 Capsella rubella HOM05D003542 ORTHO05D004799 7.8e-11 70.1 51 68.6
vmacro00095 Vaccinium macrocarpon HOM05D003542 ORTHO05D004799 7.8e-11 70.1 47 70.2
AT2G35610 Arabidopsis thaliana HOM05D003542 ORTHO05D004799 1.0e-10 69.7 54 64.8
BcaC02g11616 Brassica carinata HOM05D003542 ORTHO05D004799 1.0e-10 69.7 54 64.8
C04p13140 Brassica napus HOM05D003542 ORTHO05D004799 1.0e-10 69.7 54 64.8
Gohir.A12G201400 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.0e-10 69.7 59 62.7
Gorai.008G219000 Gossypium raimondii HOM05D003542 ORTHO05D004799 1.0e-10 69.7 59 62.7
AUR62010484 Chenopodium quinoa HOM05D003542 ORTHO05D004799 1.3e-10 69.3 41 82.9
SalBow4G0461 Salvia bowleyana HOM05D003542 ORTHO05D004799 1.3e-10 69.3 47 70.2
Hund14306 Selenicereus undatus HOM05D003542 ORTHO05D004799 2.3e-10 68.6 47 72.3
COL.COLO4_16751 Corchorus olitorius HOM05D003542 ORTHO05D004799 3.0e-10 68.2 59 61.0
SGA_v2.0_scaffold96G29103 Striga asiatica HOM05D003542 ORTHO05D004799 3.0e-10 68.2 48 70.8
Atru.chr8.2622 Acer truncatum HOM05D003542 ORTHO05D004799 3.9e-10 67.8 57 63.2
Gohir.D12G204200 Gossypium hirsutum HOM05D003542 ORTHO05D004799 3.9e-10 67.8 59 61.0
GSVIVG01036881001 Vitis vinifera HOM05D003542 ORTHO05D004799 3.9e-10 67.8 50 70.0
Manes.15G191800 Manihot esculenta HOM05D003542 ORTHO05D004799 5.1e-10 67.4 61 50.8
Nn3g19110 Nelumbo nucifera HOM05D003542 ORTHO05D004799 6.6e-10 67.0 78 51.3
TAR374G1176 Trochodendron aralioides HOM05D003542 ORTHO05D004799 6.6e-10 67.0 50 72.0
Glyma.16G076700 Glycine max HOM05D003542 ORTHO05D004799 8.6e-10 66.6 47 70.2
Duzib205G1391 Durio zibethinus HOM05D003542 ORTHO05D004799 1.1e-09 66.2 57 59.6
Rhsim11G0037300 Rhododendron simsii HOM05D003542 ORTHO05D004799 1.1e-09 66.2 91 44.0
Thecc.03G319900 Theobroma cacao HOM05D003542 ORTHO05D004799 1.1e-09 66.2 45 68.9
TWI60G1302 Tripterygium wilfordii HOM05D003542 ORTHO05D004799 1.1e-09 66.2 52 65.4
Sabra01G0180200 Salix brachista HOM05D003542 ORTHO05D004799 1.5e-09 65.9 55 56.4
Potri.004G235800 Populus trichocarpa HOM05D003542 ORTHO05D004799 1.9e-09 65.5 54 57.4
Gohir.A08G149000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 3.3e-09 64.7 60 55.0
Gohir.D08G170000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 3.3e-09 64.7 60 55.0
Gorai.004G177500 Gossypium raimondii HOM05D003542 ORTHO05D004799 3.3e-09 64.7 60 55.0
AUR62030410 Chenopodium quinoa HOM05D003542 ORTHO05D004799 4.3e-09 64.3 41 75.6
Medtr8g072310 Medicago truncatula HOM05D003542 ORTHO05D004799 4.3e-09 64.3 47 68.1
PGR042G1333 Punica granatum HOM05D003542 ORTHO05D004799 7.3e-09 63.5 58 55.2
CANSAT80G0877 Cannabis sativa HOM05D003542 ORTHO05D004799 9.5e-09 63.2 48 58.3
Aqoxy5G03565 Aquilegia oxysepala HOM05D003542 ORTHO05D004799 1.2e-08 62.8 52 61.5
Phvul.003G278500 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 1.2e-08 62.8 47 63.8
Lj4g0008068 Lotus japonicus HOM05D003542 ORTHO05D004799 1.6e-08 62.4 47 66.0
TPR.G14272 Trifolium pratense HOM05D003542 ORTHO05D004799 1.6e-08 62.4 52 61.5
Glyma.16G109700 Glycine max HOM05D003542 ORTHO05D004799 2.1e-08 62.0 47 66.0
TAR375G0128 Trochodendron aralioides HOM05D003542 ORTHO05D004799 2.1e-08 62.0 50 66.0
Sed0016507 Sechium edule HOM05D003542 ORTHO05D004799 2.8e-08 61.6 60 53.3
Sc07g0007990 Simmondsia chinensis HOM05D003542 ORTHO05D004799 2.8e-08 61.6 41 73.2
VMungo0251G1439 Vigna mungo HOM05D003542 ORTHO05D004799 2.8e-08 61.6 47 61.7
arahy.Tifrunner.gnm1.ann1.2M3042 Arachis hypogaea HOM05D003542 ORTHO05D004799 3.6e-08 61.2 54 63.0
arahy.Tifrunner.gnm1.ann1.B24I2L Arachis hypogaea HOM05D003542 ORTHO05D004799 3.6e-08 61.2 54 63.0
arahy.Tifrunner.gnm1.ann1.DFZK61 Arachis hypogaea HOM05D003542 ORTHO05D038869 3.6e-08 61.2 54 63.0
Migut.A00523 Erythranthe guttata HOM05D003542 ORTHO05D004799 3.6e-08 61.2 47 63.8
Cc08_g05880 Coffea canephora HOM05D003542 ORTHO05D004799 6.2e-08 60.5 37 67.6
Lj2g0004183 Lotus japonicus HOM05D003542 ORTHO05D004799 6.2e-08 60.5 49 57.1
Psat4g107640 Pisum sativum HOM05D003542 ORTHO05D004799 6.2e-08 60.5 52 59.6
Actinidia01250 Actinidia chinensis HOM05D003542 ORTHO05D004799 1.4e-07 59.3 63 52.4
Psat2g145280 Pisum sativum HOM05D003542 ORTHO05D004799 1.4e-07 59.3 51 64.7
Lalb_Chr05g0229201 Lupinus albus HOM05D003542 ORTHO05D004799 1.8e-07 58.9 48 62.5
CiPaw.12G055200 Carya illinoinensis HOM05D003542 ORTHO05D004799 2.4e-07 58.5 52 57.7
ClCG11G016080 Citrullus lanatus HOM05D003542 ORTHO05D004799 2.4e-07 58.5 53 54.7
Prupe.5G011600 Prunus persica HOM05D003542 ORTHO05D004799 3.1e-07 58.2 52 61.5
MD06G1008500 Malus domestica HOM05D003542 ORTHO05D004799 4.0e-07 57.8 52 59.6
VMungo1215G0924 Vigna mungo HOM05D003542 ORTHO05D004799 5.2e-07 57.4 53 60.4
Ca_22456_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 6.8e-07 57.0 50 60.0
Phvul.002G122000 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 8.9e-07 56.6 44 68.2
Ah.12g058430 Amaranthus hybridus HOM05D003542 ORTHO05D004799 2.0e-06 55.5 62 46.8
FvH4_5g25240 Fragaria vesca HOM05D003542 ORTHO05D004799 2.6e-06 55.1 41 68.3
FAN18G2203 Fragaria x ananassa HOM05D003542 ORTHO05D004799 2.6e-06 55.1 41 68.3
Ca_25048_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 4.4e-06 54.3 49 57.1
FAN08G1408 Fragaria x ananassa HOM05D003542 ORTHO05D004799 4.4e-06 54.3 41 65.9
FAN13G1207 Fragaria x ananassa HOM05D003542 ORTHO05D004799 4.4e-06 54.3 41 65.9
RcHm_v2.0_Chr7g0215361 Rosa chinensis HOM05D003542 ORTHO05D004799 4.4e-06 54.3 41 65.9
Cfa012300 Carpinus fangiana HOM05D003542 ORTHO05D004799 5.8e-06 53.9 52 55.8
MELO3C010524.2 Cucumis melo HOM05D003542 ORTHO05D004799 7.6e-06 53.5 52 53.8
CsaV3_4G027890 Cucumis sativus L. HOM05D003542 ORTHO05D004799 7.6e-06 53.5 52 53.8
Eucgr.E01147 Eucalyptus grandis HOM05D003542 ORTHO05D004799 9.9e-06 53.1 56 51.8
HanXRQChr17g0537351 Helianthus annuus HOM05D003542 ORTHO05D004799 9.9e-06 53.1 52 51.9


User provided reference genes

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