Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A738T8 Lonicera japonica HOM05D003637 ORTHO05D004175 1.7e-270 935.6 544 100.0
Lj9C543T19 Lonicera japonica HOM05D003637 ORTHO05D004175 3.6e-164 582.4 529 69.4
MSTRG.13350 Avicennia marina HOM05D003637 ORTHO05D004175 3.2e-120 436.4 519 51.6
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 2.8e-116 423.3 516 51.0
GSVIVG01036288001 Vitis vinifera HOM05D003637 ORTHO05D004175 2.0e-114 417.2 518 51.0
Solyc01g102800.3 Solanum lycopersicum HOM05D003637 ORTHO05D004175 2.6e-114 416.8 522 50.0
Sopen01g045200 Solanum pennellii HOM05D003637 ORTHO05D004175 2.9e-113 413.3 522 49.8
TAR628G0957 Trochodendron aralioides HOM05D003637 ORTHO05D004175 7.1e-112 408.7 540 49.6
PGSC0003DMG400018260 Solanum tuberosum HOM05D003637 ORTHO05D004175 2.1e-111 407.1 522 49.0
Nn3g21609 Nelumbo nucifera HOM05D003637 ORTHO05D004175 3.5e-111 406.4 538 50.9
HanXRQChr07g0194841 Helianthus annuus HOM05D003637 ORTHO05D004175 3.0e-110 403.3 523 52.0
vmacro18730 Vaccinium macrocarpon HOM05D003637 ORTHO05D004175 3.0e-110 403.3 546 49.5
Sc25g0003100 Simmondsia chinensis HOM05D003637 ORTHO05D004175 2.5e-109 400.2 515 50.7
ECA238G2554 Erigeron canadensis HOM05D003637 ORTHO05D004175 4.8e-108 396.0 516 48.1
Ciclev10018820m.g Citrus clementina HOM05D003637 ORTHO05D004175 1.1e-107 394.8 518 48.1
Rhsim08G0251700 Rhododendron simsii HOM05D003637 ORTHO05D004175 5.3e-107 392.5 541 49.2
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 6.9e-107 392.1 515 50.7
Lsat_1_v5_gn_2_108061 Lactuca sativa HOM05D003637 ORTHO05D004175 1.2e-106 391.3 523 48.2
Peaxi162Scf00194g01048 Petunia axillaris HOM05D003637 ORTHO05D004175 9.9e-106 388.3 510 47.6
THA.LOC104820917 Tarenaya hassleriana HOM05D003637 ORTHO05D004175 9.9e-106 388.3 521 46.6
SalBow8G3371 Salvia bowleyana HOM05D003637 ORTHO05D004175 1.7e-105 387.5 517 49.5
Migut.E00203 Erythranthe guttata HOM05D003637 ORTHO05D004175 1.1e-104 384.8 518 49.4
CANSAT64G0718 Cannabis sativa HOM05D003637 ORTHO05D004175 3.2e-104 383.3 526 47.1
Cpa.g.sc1431.2 Carica papaya HOM05D003637 ORTHO05D004175 1.2e-103 381.3 514 46.9
Nitab4.5_0003246g0090 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.6e-103 380.9 520 50.6
Prupe.8G006900 Prunus persica HOM05D003637 ORTHO05D004175 7.9e-103 378.6 523 48.0
DCAR_014239 Daucus carota HOM05D003637 ORTHO05D004175 1.3e-102 377.9 528 45.1
CSS0048399 Camellia sinensis var. sinensis HOM05D003637 ORTHO05D004175 3.0e-102 376.7 519 50.7
QL09p001806 Quercus lobata HOM05D003637 ORTHO05D004175 3.9e-102 376.3 514 46.9
QL11p001805 Quercus lobata HOM05D003637 ORTHO05D004175 3.9e-102 376.3 514 46.9
Atru.chr13.2508 Acer truncatum HOM05D003637 ORTHO05D004175 1.5e-101 374.4 518 46.5
CANSAT35G0345 Cannabis sativa HOM05D003637 ORTHO05D004175 1.5e-101 374.4 526 46.4
AUR62038534 Chenopodium quinoa HOM05D003637 ORTHO05D004175 1.5e-101 374.4 516 49.0
Nitab4.5_0000110g0370 Nicotiana tabacum HOM05D003637 ORTHO05D004175 2.5e-101 373.6 523 50.5
Haze_13959 Corylus avellana HOM05D003637 ORTHO05D004175 9.6e-101 371.7 516 47.5
QL09p050166 Quercus lobata HOM05D003637 ORTHO05D004175 9.6e-101 371.7 518 45.8
PSO782G5164 Papaver somniferum HOM05D003637 ORTHO05D004175 1.3e-100 371.3 536 47.6
MD05G1003500 Malus domestica HOM05D003637 ORTHO05D004175 1.6e-100 370.9 515 47.6
Aa31LG5G13230 Aethionema arabicum HOM05D003637 ORTHO05D004175 2.1e-100 370.5 521 45.5
PSO063G3025 Papaver somniferum HOM05D003637 ORTHO05D004175 2.1e-100 370.5 536 47.4
Cc04_g00120 Coffea canephora HOM05D003637 ORTHO05D004175 3.7e-100 369.8 519 47.6
CAN.G1379.10 Capsicum annuum HOM05D003637 ORTHO05D004175 4.8e-100 369.4 553 45.0
MBI03_g13500_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 2.4e-99 367.1 539 46.2
Cfa008076 Carpinus fangiana HOM05D003637 ORTHO05D004175 3.1e-99 366.7 512 46.5
CsaV3_2G033230 Cucumis sativus L. HOM05D003637 ORTHO05D004175 3.1e-99 366.7 520 46.3
AUR62013381 Chenopodium quinoa HOM05D003637 ORTHO05D004175 1.2e-98 364.8 517 47.8
ClCG11G008420 Citrullus lanatus HOM05D003637 ORTHO05D004175 2.6e-98 363.6 520 45.6
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 3.4e-98 363.2 526 45.8
PGR042G1411 Punica granatum HOM05D003637 ORTHO05D004175 5.8e-98 362.5 519 45.9
CiPaw.03G014200 Carya illinoinensis HOM05D003637 ORTHO05D004175 7.6e-98 362.1 512 44.5
Manes.02G201900 Manihot esculenta HOM05D003637 ORTHO05D004175 1.0e-97 361.7 513 45.0
Sed0019638 Sechium edule HOM05D003637 ORTHO05D004175 1.0e-97 361.7 521 46.4
RcHm_v2.0_Chr6g0251201 Rosa chinensis HOM05D003637 ORTHO05D004175 1.7e-97 360.9 528 46.2
Eucgr.F02946 Eucalyptus grandis HOM05D003637 ORTHO05D004175 2.9e-97 360.1 521 47.2
MELO3C008093.2 Cucumis melo HOM05D003637 ORTHO05D004175 1.4e-96 357.8 547 45.2
Cfa004677 Carpinus fangiana HOM05D003637 ORTHO05D004175 1.9e-96 357.5 516 45.3
Nitab4.5_0001497g0160 Nicotiana tabacum HOM05D003637 ORTHO05D004175 2.5e-96 357.1 565 47.6
arahy.Tifrunner.gnm1.ann1.TE3K01 Arachis hypogaea HOM05D003637 ORTHO05D004175 7.1e-96 355.5 521 44.7
Lsat_1_v5_gn_8_62500 Lactuca sativa HOM05D003637 ORTHO05D004175 1.2e-95 354.8 515 50.1
arahy.Tifrunner.gnm1.ann1.JT5ZHZ Arachis hypogaea HOM05D003637 ORTHO05D004175 3.5e-95 353.2 519 45.5
MD10G1004600 Malus domestica HOM05D003637 ORTHO05D004175 4.6e-95 352.8 518 45.0
Haze_10275 Corylus avellana HOM05D003637 ORTHO05D004175 1.0e-94 351.7 507 45.2
Lalb_Chr16g0387641 Lupinus albus HOM05D003637 ORTHO05D004175 1.3e-94 351.3 512 44.3
Potri.019G071400 Populus trichocarpa HOM05D003637 ORTHO05D004175 1.3e-94 351.3 521 44.9
arahy.Tifrunner.gnm1.ann1.5D638A Arachis hypogaea HOM05D003637 ORTHO05D004175 2.3e-94 350.5 519 44.9
Glyma.08G042400 Glycine max HOM05D003637 ORTHO05D004175 3.0e-94 350.1 515 44.7
MBI06_g32172_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 6.7e-94 349.0 547 45.0
Hund26943 Selenicereus undatus HOM05D003637 ORTHO05D004175 6.7e-94 349.0 519 45.3
Aqoxy1G03903 Aquilegia oxysepala HOM05D003637 ORTHO05D004175 1.1e-93 348.2 534 43.8
Ca_14602_v3 Cicer arietinum L. HOM05D003637 ORTHO05D004175 1.1e-93 348.2 516 45.7
FAN27G1433 Fragaria x ananassa HOM05D003637 ORTHO05D004175 1.1e-93 348.2 521 45.1
arahy.Tifrunner.gnm1.ann1.ICJU69 Arachis hypogaea HOM05D003637 ORTHO05D004175 2.5e-93 347.1 519 44.9
FvH4_2g00780 Fragaria vesca HOM05D003637 ORTHO05D004175 2.5e-93 347.1 521 45.3
FAN20G2805 Fragaria x ananassa HOM05D003637 ORTHO05D004175 2.5e-93 347.1 521 45.1
FAN24G0737 Fragaria x ananassa HOM05D003637 ORTHO05D004175 2.5e-93 347.1 521 45.3
Carub.0003s0186 Capsella rubella HOM05D003637 ORTHO05D004175 5.7e-93 345.9 520 42.7
EL10Ac1g01273 Beta vulgaris HOM05D003637 ORTHO05D004175 7.4e-93 345.5 517 46.4
CARHR076770 Cardamine hirsuta HOM05D003637 ORTHO05D004175 2.8e-92 343.6 521 43.8
Atru.chr13.2499 Acer truncatum HOM05D003637 ORTHO05D004175 8.2e-92 342.0 518 43.8
Sp3g01790 Schrenkiella parvula HOM05D003637 ORTHO05D004175 8.2e-92 342.0 522 42.9
Ah.05g170380 Amaranthus hybridus HOM05D003637 ORTHO05D004175 1.1e-91 341.7 521 45.1
Lj4g0018134 Lotus japonicus HOM05D003637 ORTHO05D004175 2.4e-91 340.5 512 44.7
AL3G12170 Arabidopsis lyrata HOM05D003637 ORTHO05D004175 5.3e-91 339.3 522 42.7
Eucgr.E00010 Eucalyptus grandis HOM05D003637 ORTHO05D004175 6.9e-91 339.0 522 45.0
Phvul.002G320100 Phaseolus vulgaris HOM05D003637 ORTHO05D004175 6.9e-91 339.0 523 45.5
VMungo0251G0405 Vigna mungo HOM05D003637 ORTHO05D004175 6.9e-91 339.0 525 45.3
Glyma.05G234900 Glycine max HOM05D003637 ORTHO05D004175 9.0e-91 338.6 518 43.8
Lsat_1_v5_gn_1_27560 Lactuca sativa HOM05D003637 ORTHO05D004175 2.6e-90 337.0 391 53.5
BolC1t05898H Brassica oleracea HOM05D003637 ORTHO05D004175 5.8e-90 335.9 512 43.8
BNapus_Darmor_BZH_scaffold_122p00030 Brassica napus HOM05D003637 ORTHO05D004175 1.0e-89 335.1 512 43.6
AT3G02760 Arabidopsis thaliana HOM05D003637 ORTHO05D004175 1.3e-89 334.7 522 42.9
Psat6g083160 Pisum sativum HOM05D003637 ORTHO05D004175 2.2e-89 334.0 516 44.6
PSO513G0157 Papaver somniferum HOM05D003637 ORTHO05D004175 6.5e-89 332.4 536 43.5
BcaNung05408 Brassica carinata HOM05D003637 ORTHO05D004175 4.2e-88 329.7 512 43.2
Lsat_1_v5_gn_3_107861 Lactuca sativa HOM05D003637 ORTHO05D004175 1.6e-87 327.8 539 44.3
TPR.G8734 Trifolium pratense HOM05D003637 ORTHO05D004175 1.0e-86 325.1 518 43.1
Medtr1g057860 Medicago truncatula HOM05D003637 ORTHO05D004175 6.7e-86 322.4 516 43.2
BraA03t12479Z Brassica rapa HOM05D003637 ORTHO05D004175 1.1e-85 321.6 520 43.1
Oeu017573.1 Olea europaea HOM05D003637 ORTHO05D004175 2.5e-85 320.5 459 46.2
SHI17420 Sapria himalayana HOM05D003637 ORTHO05D004175 2.2e-84 317.4 517 40.8
A03p33090 Brassica napus HOM05D003637 ORTHO05D004175 8.2e-84 315.5 520 42.5
Thhalv10020033m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 1.4e-83 314.7 530 41.5
TWI39G1182 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 1.5e-82 311.2 383 49.1
BcaB04g19390 Brassica carinata HOM05D003637 ORTHO05D004175 2.2e-81 307.4 521 41.8
C03p40270 Brassica napus HOM05D003637 ORTHO05D004175 8.5e-81 305.4 518 41.5
BolC3t16292H Brassica oleracea HOM05D003637 ORTHO05D004175 3.2e-80 303.5 518 41.3
TWI38G2004 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 3.6e-79 300.1 398 47.7
Duzib177G0609 Durio zibethinus HOM05D003637 ORTHO05D004175 3.0e-78 297.0 387 50.1
CDE10G0800 Ceratophyllum demersum HOM05D003637 ORTHO05D004175 1.7e-76 291.2 538 40.1
Thecc.05G195900 Theobroma cacao HOM05D003637 ORTHO05D004175 1.4e-75 288.1 392 47.2
PGR083G1739 Punica granatum HOM05D003637 ORTHO05D004175 3.1e-75 287.0 517 40.6
Gorai.004G262600 Gossypium raimondii HOM05D003637 ORTHO05D004175 6.9e-75 285.8 387 48.6
Oeu019452.1 Olea europaea HOM05D003637 ORTHO05D004175 9.1e-75 285.4 448 43.8
Gohir.D08G246100 Gossypium hirsutum HOM05D003637 ORTHO05D004175 1.2e-74 285.0 391 48.8
Gohir.A08G225700 Gossypium hirsutum HOM05D003637 ORTHO05D004175 4.5e-74 283.1 387 48.1
Duzib106G1310 Durio zibethinus HOM05D003637 ORTHO05D004175 7.7e-74 282.3 387 49.1
Lsat_1_v5_gn_7_60281 Lactuca sativa HOM05D003637 ORTHO05D004175 2.9e-73 280.4 336 51.5
BcaB04g21398 Brassica carinata HOM05D003637 ORTHO05D004175 5.0e-73 279.6 516 39.9
PSO210G5637 Papaver somniferum HOM05D003637 ORTHO05D004175 1.6e-71 274.6 526 39.2
ATR1136G178 Amborella trichopoda HOM05D003637 ORTHO05D004175 3.7e-68 263.5 567 36.5
Zm00001eb267790 Zea mays HOM05D003637 ORTHO05D004175 1.8e-67 261.2 526 37.8
Zm00001eb354240 Zea mays HOM05D003637 ORTHO05D004175 9.1e-67 258.8 526 38.4
SEGI_15544 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 2.0e-66 257.7 578 35.6
Os05g0150900 Oryza sativa ssp. japonica HOM05D003637 ORTHO05D004175 7.2e-64 249.2 399 43.6
Thhalv10001912m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 8.8e-62 242.3 519 36.2
SEGI_40078 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 1.5e-56 224.9 400 39.5
Aa31LG11G13210 Aethionema arabicum HOM05D003637 ORTHO05D004175 3.2e-56 223.8 480 37.3
COL.COLO4_20337 Corchorus olitorius HOM05D003637 ORTHO05D004175 8.8e-54 215.7 383 41.3
Lsat_1_v5_gn_3_57620 Lactuca sativa HOM05D003637 ORTHO05D004175 8.8e-54 215.7 362 42.5
AagrBONN_evm.TU.Sc2ySwM_344.5308 Anthoceros agrestis HOM05D003637 ORTHO05D004175 2.0e-45 188.0 405 37.5
Mapoly0125s0016 Marchantia polymorpha HOM05D003637 ORTHO05D004175 2.2e-44 184.5 436 34.9
HanXRQChr01g0009581 Helianthus annuus HOM05D003637 ORTHO05D004175 8.3e-36 156.0 278 48.6
BNapus_Darmor_BZH_scaffold_99p00040 Brassica napus HOM05D003637 ORTHO05D004175 1.6e-34 151.8 257 41.6
HPP92_000901 Vanilla planifolia HOM05D003637 ORTHO05D004175 4.6e-34 150.2 105 69.5
HPP92_000900 Vanilla planifolia HOM05D003637 ORTHO05D004175 9.5e-32 142.5 405 33.3
CBR_g19630 Chara braunii HOM05D003637 ORTHO05D004175 3.6e-31 140.6 509 30.1
FAN14G4419 Fragaria x ananassa HOM05D003637 ORTHO05D004175 2.6e-29 134.4 301 37.5
Cre02.g142352 Chlamydomonas reinhardtii HOM05D003637 ORTHO05D004175 1.7e-28 131.7 165 46.7
TAR374G0972 Trochodendron aralioides HOM05D003637 ORTHO05D004175 1.9e-24 118.2 218 41.7
TPR.G29194 Trifolium pratense HOM05D003637 ORTHO05D004175 1.1e-22 112.5 94 61.7
Medtr4g129940 Medicago truncatula HOM05D003637 ORTHO05D004175 7.8e-18 96.3 61 70.5
Cfa022007 Carpinus fangiana HOM05D003637 ORTHO05D004175 1.7e-17 95.1 64 67.2
BNapus_Darmor_BZH_scaffold_99p00050 Brassica napus HOM05D003637 ORTHO05D004175 8.6e-17 92.8 51 86.3
Nitab4.5_0002446g0110 Nicotiana tabacum HOM05D003637 ORTHO05D004175 3.1e-14 84.3 121 47.1
BraSC328t45965Z Brassica rapa HOM05D003637 ORTHO05D004175 4.0e-14 84.0 85 54.1
Nitab4.5_0002446g0080 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.5e-13 82.0 149 37.6
QL06p049632 Quercus lobata HOM05D003637 ORTHO05D004175 3.4e-13 80.9 93 55.9
Medtr7g012030 Medicago truncatula HOM05D000208 ORTHO05D004175 4.9e-12 77.0 51 64.7
TAR374G0451 Trochodendron aralioides HOM05D003637 ORTHO05D004175 1.7e-09 68.6 74 55.4
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 3.0e-09 67.8 38 84.2
BcaC06g34238 Brassica carinata HOM05D001392 ORTHO05D032327 6.6e-09 66.6 86 47.7
Medtr6g046330 Medicago truncatula HOM05D000208 ORTHO05D012967 1.5e-08 65.5 39 71.8
AagrBONN_evm.TU.Sc2ySwM_344.4290 Anthoceros agrestis HOM05D003637 ORTHO05D004175 4.3e-08 63.9 337 27.6
TPR.G5462 Trifolium pratense HOM05D011581 ORTHO05D004175 3.6e-07 60.8 127 33.1
Medtr6g038890 Medicago truncatula HOM05D000304 ORTHO05D004175 1.1e-06 59.3 52 55.8


User provided reference genes

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