Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 0.0e+00 1244.6 600 100.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 2.6e-285 984.9 618 74.9
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.0e-277 958.7 626 73.5
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 2.0e-272 942.2 670 67.6
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.8e-266 921.8 618 70.1
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.4e-262 908.7 598 71.2
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 9.2e-262 906.7 651 67.1
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 7.8e-261 903.7 644 66.9
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 8.9e-257 890.2 614 67.8
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.5e-256 889.4 612 68.1
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 3.4e-256 888.3 612 68.5
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 3.4e-256 888.3 608 69.2
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 9.8e-256 886.7 613 69.2
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 9.8e-256 886.7 604 69.2
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.1e-254 883.2 646 66.4
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 5.4e-254 880.9 624 67.8
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 2.0e-253 879.0 607 68.5
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 6.2e-250 867.5 600 68.5
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 8.0e-250 867.1 615 66.8
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.4e-249 866.3 616 67.0
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 2.3e-249 865.5 609 67.7
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 6.8e-249 864.0 606 68.3
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 8.9e-249 863.6 616 67.5
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 5.8e-248 860.9 610 66.7
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 2.2e-247 859.0 609 66.7
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 2.2e-247 859.0 616 66.9
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 8.3e-247 857.1 623 66.6
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.9e-246 855.9 590 69.5
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 4.1e-246 854.7 609 66.3
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 7.0e-246 854.0 591 69.2
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 9.2e-246 853.6 610 66.4
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 9.2e-246 853.6 610 66.2
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.6e-245 852.8 612 65.8
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.0e-245 852.4 616 66.4
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 6.0e-245 850.9 617 66.8
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.7e-244 849.4 605 67.4
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 3.0e-244 848.6 607 67.4
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 5.0e-244 847.8 591 68.7
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.1e-243 846.7 607 66.9
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.5e-243 845.5 607 67.2
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 3.3e-243 845.1 629 64.1
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.1e-242 842.4 629 64.4
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 2.6e-240 835.5 625 64.0
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 2.6e-240 835.5 600 64.5
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 5.8e-240 834.3 612 65.4
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 5.8e-240 834.3 599 65.6
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.7e-239 832.8 602 66.3
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.9e-239 832.0 618 66.3
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 8.3e-239 830.5 601 65.6
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.4e-238 829.7 605 66.0
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 3.0e-236 822.0 602 65.4
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.1e-235 820.1 645 63.1
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.3e-235 817.4 629 64.4
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 9.5e-235 817.0 618 63.8
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.6e-234 816.2 620 63.1
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 2.8e-234 815.5 609 63.9
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.8e-233 812.8 607 64.6
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 3.1e-233 812.0 607 65.6
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 3.1e-233 812.0 624 63.0
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 8.9e-233 810.4 619 64.3
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 3.4e-232 808.5 604 64.9
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 5.8e-232 807.7 610 64.1
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 2.2e-231 805.8 610 63.8
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.1e-230 803.5 601 65.4
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 2.4e-230 802.4 624 61.9
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 3.2e-230 802.0 527 72.1
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 2.1e-229 799.3 606 62.0
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 2.1e-229 799.3 616 63.0
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.0e-228 797.0 606 62.7
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.7e-228 796.2 613 63.8
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.1e-227 793.5 608 62.5
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.9e-227 792.7 613 63.1
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 4.3e-227 791.6 607 64.3
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 5.2e-225 784.6 602 62.0
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 6.9e-225 784.3 619 61.2
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.5e-224 783.1 598 61.9
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 2.0e-224 782.7 615 61.5
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.4e-222 776.5 595 60.5
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.3e-220 769.2 667 59.7
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 2.4e-217 759.2 613 61.0
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.7e-215 753.1 623 58.6
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 6.4e-215 751.1 613 60.2
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.5e-213 745.3 625 58.7
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.5e-211 740.0 620 59.4
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 7.4e-211 737.6 783 51.2
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.8e-210 734.9 618 58.1
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 5.8e-208 728.0 623 58.1
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.9e-203 713.0 614 58.5
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.3e-202 710.3 610 54.9
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.6e-202 709.9 612 55.9
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 2.1e-202 709.5 611 60.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 2.8e-202 709.1 612 55.6
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.5e-200 703.4 607 54.2
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.6e-200 702.6 612 55.2
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.8e-200 701.4 611 55.0
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 2.9e-199 699.1 611 55.3
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 8.4e-199 697.6 619 55.6
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.9e-198 696.4 657 55.6
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-198 696.4 614 55.4
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.2e-198 695.7 600 56.5
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 5.5e-198 694.9 611 54.5
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 9.3e-198 694.1 658 54.7
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 9.3e-198 694.1 604 58.3
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.2e-197 693.7 613 54.5
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 7.9e-197 691.0 606 54.5
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 7.9e-197 691.0 602 55.1
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.0e-196 690.6 612 53.6
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 2.3e-196 689.5 600 55.5
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.9e-196 688.7 612 54.4
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.5e-195 686.8 612 53.9
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.5e-195 686.8 620 53.9
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.5e-195 686.0 602 54.5
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 5.7e-195 684.9 604 54.5
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 6.3e-194 681.4 602 54.2
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 6.3e-194 681.4 602 54.2
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.8e-193 679.9 602 57.1
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.5e-192 676.8 613 53.3
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 2.2e-191 672.9 628 52.9
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 8.5e-191 671.0 603 56.9
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.5e-190 669.5 523 60.0
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 4.2e-190 668.7 577 56.7
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.1e-189 666.4 562 59.6
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 1.4e-185 653.7 667 50.1
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.9e-184 648.3 620 53.1
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 5.1e-180 635.2 603 52.1
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 5.1e-180 635.2 604 54.6
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.8e-167 592.4 629 48.3
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 6.5e-167 591.7 612 49.3
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 8.8e-164 581.3 604 50.5
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.0e-156 557.8 614 47.6
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 5.2e-156 555.4 538 51.9
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.6e-152 543.9 605 48.6
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 2.7e-128 463.4 391 56.0
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 3.5e-120 436.4 297 66.3
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.2e-117 427.9 369 53.4
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 6.8e-116 422.2 404 54.2
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 4.2e-113 412.9 277 66.1
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 3.9e-111 406.4 231 83.1
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 5.8e-107 392.5 460 46.5
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 2.1e-101 374.0 322 54.3
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 2.2e-98 364.0 565 36.6
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.0e-95 355.1 327 55.4
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 5.6e-94 349.4 349 47.9
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 2.1e-88 330.9 568 35.0
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 3.1e-84 317.0 544 36.0
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 4.8e-77 293.1 302 46.7
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.7e-58 231.5 139 77.0
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 1.5e-57 228.4 245 51.0
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.7e-51 206.1 211 50.2
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 2.5e-49 201.1 210 51.9
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-45 188.7 233 43.3
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.4e-44 185.3 378 33.1
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.4e-44 184.5 128 64.1
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 2.9e-42 177.6 266 39.8
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.9e-41 174.9 177 52.5
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 2.2e-37 161.4 96 71.9
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 3.1e-36 157.5 99 71.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 3.1e-36 157.5 99 71.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 3.1e-36 157.5 99 71.7
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 4.1e-36 157.1 97 73.2
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.6e-30 137.9 163 42.9
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 4.9e-29 133.7 246 35.0
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 9.2e-28 129.4 251 33.5
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 2.0e-22 111.7 144 41.7
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 4.4e-22 110.5 62 71.0
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 6.0e-19 100.1 230 34.3
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.0e-18 97.8 205 31.7
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 8.6e-18 96.3 114 47.4
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 9.5e-17 92.8 59 69.5
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 6.4e-13 80.1 43 76.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 6.4e-13 80.1 43 76.7
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 2.3e-10 71.6 54 61.1


User provided reference genes

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