Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 9.2e-108 393.7 212 100.0
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 3.9e-90 335.1 214 80.8
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 1.2e-35 154.1 217 48.8
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.6e-27 125.9 216 40.7
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 4.7e-27 125.6 209 41.6
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.4e-26 124.0 219 40.6
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 1.4e-26 124.0 206 40.8
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 3.0e-26 122.9 215 40.5
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.0e-26 122.5 219 40.2
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 8.8e-26 121.3 215 40.5
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.5e-25 120.6 218 39.4
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.0e-25 120.2 118 55.1
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 3.4e-25 119.4 117 53.0
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 1.3e-24 117.5 210 37.6
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 2.2e-24 116.7 211 39.8
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 4.8e-24 115.5 173 41.6
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.1e-23 114.4 214 37.9
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 1.1e-23 114.4 117 50.4
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.2e-22 110.9 214 37.4
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 4.5e-22 109.0 215 39.1
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 4.5e-22 109.0 215 37.2
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 5.9e-22 108.6 211 38.9
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 1.0e-21 107.8 197 38.6
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 2.2e-21 106.7 218 36.2
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 2.2e-21 106.7 214 36.0
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 2.9e-21 106.3 208 37.0
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 1.1e-20 104.4 214 35.5
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.9e-20 103.6 117 46.2
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 2.5e-20 103.2 217 38.2
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 4.2e-20 102.4 213 35.7
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 7.2e-20 101.7 224 37.5
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 9.4e-20 101.3 112 48.2
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 1.2e-19 100.9 112 47.3
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.2e-19 100.9 196 35.7
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.6e-19 100.5 225 35.1
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 1.6e-19 100.5 109 47.7
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 2.1e-19 100.1 215 36.3
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 2.7e-19 99.8 193 32.6
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.0e-18 97.8 210 36.2
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.8e-18 97.1 221 34.4
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.0e-18 96.3 112 47.3
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 3.0e-18 96.3 210 35.2
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.0e-18 95.9 107 49.5
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 8.8e-18 94.7 184 34.2
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 8.8e-18 94.7 211 32.7
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.6e-17 93.2 211 32.2
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.6e-17 93.2 216 33.3
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 3.4e-17 92.8 216 33.3
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 4.4e-17 92.4 107 45.8
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 5.7e-17 92.0 212 31.6
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 9.8e-17 91.3 208 33.2
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 2.8e-16 89.7 115 45.2
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 4.9e-16 89.0 211 32.7
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 8.3e-16 88.2 212 33.5
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 5.4e-15 85.5 126 38.9
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 5.4e-15 85.5 110 43.6
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 7.0e-15 85.1 186 34.4
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.0e-14 83.6 95 44.2
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.7e-14 83.2 105 41.9
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.7e-14 83.2 105 41.9
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 2.7e-14 83.2 199 35.7
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 3.5e-14 82.8 213 33.3
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 4.5e-14 82.4 207 32.4
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.9e-14 82.0 199 35.7
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 5.9e-14 82.0 76 59.2
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 7.7e-14 81.6 106 40.6
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 1.0e-13 81.3 187 33.2
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 1.0e-13 81.3 186 30.1
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 1.0e-13 81.3 193 32.6
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.3e-13 80.9 199 35.7
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 1.7e-13 80.5 187 33.7
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 1.7e-13 80.5 187 34.2
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 1.7e-13 80.5 108 40.7
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 2.9e-13 79.7 181 32.0
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 2.9e-13 79.7 139 39.6
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.9e-13 79.7 93 43.0
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 3.8e-13 79.3 105 44.8
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 5.0e-13 79.0 189 36.0
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 5.0e-13 79.0 205 30.2
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 6.6e-13 78.6 107 45.8
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 8.6e-13 78.2 94 45.7
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 8.6e-13 78.2 107 39.3
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.1e-12 77.8 192 33.3
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.5e-12 76.6 147 35.4
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 2.5e-12 76.6 212 33.0
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 3.3e-12 76.3 188 34.6
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 3.3e-12 76.3 102 41.2
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 4.3e-12 75.9 185 31.9
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 4.3e-12 75.9 190 31.1
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 4.3e-12 75.9 92 47.8
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 4.3e-12 75.9 92 47.8
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 4.3e-12 75.9 92 47.8
Lj6P329T6 Lonicera japonica HOM05D038820 ORTHO05D003767 4.3e-12 75.9 45 73.3
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 5.6e-12 75.5 101 43.6
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 7.3e-12 75.1 90 46.7
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 9.5e-12 74.7 207 30.9
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 1.2e-11 74.3 212 31.6
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.6e-11 73.9 209 34.0
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 2.1e-11 73.6 94 42.6
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 2.8e-11 73.2 94 42.6
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 2.8e-11 73.2 166 32.5
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 2.8e-11 73.2 189 30.7
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 3.6e-11 72.8 89 43.8
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 3.6e-11 72.8 89 43.8
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 3.6e-11 72.8 89 43.8
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 3.6e-11 72.8 89 43.8
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 3.6e-11 72.8 89 41.6
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 4.7e-11 72.4 89 43.8
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 4.7e-11 72.4 68 50.0
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 6.1e-11 72.0 90 46.7
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 6.1e-11 72.0 94 42.6
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 6.1e-11 72.0 90 46.7
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 6.1e-11 72.0 182 33.5
Lj1P960T63 Lonicera japonica HOM05D038820 ORTHO05D003767 8.0e-11 71.6 45 68.9
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 1.0e-10 71.2 191 33.5
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.0e-10 71.2 175 34.9
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 1.4e-10 70.9 83 43.4
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 1.4e-10 70.9 83 43.4
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 1.4e-10 70.9 75 48.0
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.8e-10 70.5 66 48.5
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 2.3e-10 70.1 85 42.4
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 3.0e-10 69.7 83 42.2
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 3.0e-10 69.7 83 42.2
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 3.0e-10 69.7 89 41.6
Lj9P163T4 Lonicera japonica HOM05D038820 ORTHO05D003767 4.0e-10 69.3 45 66.7
VMungo0647G2380 Vigna mungo HOM05D058389 ORTHO05D003767 4.0e-10 69.3 75 48.0
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 5.2e-10 68.9 83 41.0
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 2.0e-09 67.0 185 31.4
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 2.6e-09 66.6 188 31.9
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 3.4e-09 66.2 160 31.9
Nitab4.5_0000406g0040 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.4e-09 66.2 77 49.4
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 5.7e-09 65.5 69 44.9
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 5.7e-09 65.5 107 41.1
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 1.3e-08 64.3 78 42.3
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.2e-08 63.5 59 50.8
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.2e-08 63.5 68 48.5
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 4.9e-08 62.4 69 46.4
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 4.9e-08 62.4 221 29.9
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 4.9e-08 62.4 185 31.4
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 4.9e-08 62.4 185 31.4
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 4.9e-08 62.4 158 32.3
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 8.3e-08 61.6 66 43.9
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 1.1e-07 61.2 76 39.5
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 1.4e-07 60.8 177 28.8
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 1.8e-07 60.5 177 29.4
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 1.8e-07 60.5 99 38.4
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 3.2e-07 59.7 61 45.9
Zm00001eb417870 Zea mays HOM05D018893 ORTHO05D020945 4.1e-07 59.3 64 39.1
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 7.0e-07 58.5 87 36.8
SEGI_37840 Sequoiadendron giganteum HOM05D028836 ORTHO05D003767 7.0e-07 58.5 116 31.0
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 9.2e-07 58.2 90 34.4
Os01g0229300 Oryza sativa ssp. japonica HOM05D018893 ORTHO05D020945 9.2e-07 58.2 113 31.9
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.2e-06 57.8 171 28.1
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 7.8e-06 55.1 188 28.7
unitig_85.g27153 Utricularia gibba HOM05D004021 ORTHO05D003767 7.8e-06 55.1 127 29.9


User provided reference genes

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