Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 0.0e+00 2457.9 1241 100.0
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 1.7e-233 813.9 1304 42.2
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 1.1e-224 784.6 521 76.0
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 9.8e-218 761.5 1336 40.3
Lj8P589T28 Lonicera japonica HOM05D004021 ORTHO05D003767 1.5e-162 578.2 360 84.4
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 8.2e-148 529.3 1280 35.3
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.0e-142 510.8 1332 33.4
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 7.7e-138 496.1 1323 32.3
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 7.3e-120 436.4 1321 31.6
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 1.5e-112 412.1 1323 30.5
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 4.9e-108 397.1 1320 30.8
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 4.9e-108 397.1 1220 31.4
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 2.0e-106 391.7 1313 31.1
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.3e-105 389.0 1377 29.2
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 3.1e-102 377.9 1336 29.6
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 4.0e-102 377.5 1344 29.8
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.7e-100 372.1 1331 29.2
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 5.4e-99 367.1 1352 29.2
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 6.0e-98 363.6 1296 29.2
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 8.6e-97 359.8 1317 29.2
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.9e-96 358.6 1335 28.9
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 2.8e-95 354.8 1338 28.3
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 2.0e-93 348.6 1337 28.1
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 1.1e-91 342.8 1320 28.5
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 5.1e-89 334.0 214 80.8
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.3e-88 331.3 1272 28.4
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 3.3e-88 331.3 1279 28.0
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 5.6e-88 330.5 1317 29.1
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 6.2e-87 327.0 1365 28.1
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 6.2e-87 327.0 1307 28.8
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 8.1e-87 326.6 1260 28.7
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 6.9e-86 323.6 1280 27.7
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 8.9e-86 323.2 1316 26.6
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 8.9e-86 323.2 1272 28.0
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.5e-85 322.4 1428 28.3
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 1.5e-85 322.4 867 32.1
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 2.6e-85 321.6 1317 28.8
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.4e-85 321.2 1281 28.3
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.4e-83 313.9 1334 28.3
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 9.3e-83 313.2 1263 28.3
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 4.6e-82 310.8 1324 28.1
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 6.6e-81 307.0 1263 27.2
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 8.7e-81 306.6 1330 28.0
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 1.5e-80 305.8 1262 27.4
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.1e-79 302.0 1325 27.8
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 4.0e-78 297.7 1325 27.7
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 6.9e-78 297.0 1304 27.3
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 8.4e-76 290.0 1295 27.3
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 4.2e-75 287.7 1304 27.3
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 7.9e-74 283.5 807 31.8
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 3.9e-73 281.2 1282 28.7
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 1.3e-71 276.2 1262 26.9
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 9.0e-70 270.0 1252 27.2
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 9.9e-69 266.5 1308 27.1
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 4.2e-67 261.2 1274 26.3
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 5.5e-67 260.8 1276 27.2
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 5.7e-56 224.2 1314 26.4
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 9.0e-54 216.9 1084 26.8
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.6e-53 215.3 1398 24.9
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 4.5e-53 214.5 1325 24.9
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 8.7e-49 200.3 1307 25.9
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 1.9e-48 199.1 1312 24.3
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 4.3e-48 198.0 1294 24.8
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 9.7e-48 196.8 1316 25.0
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 1.3e-47 196.4 1320 26.1
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 3.4e-45 188.3 1306 26.0
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 4.5e-45 188.0 1111 25.2
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 7.7e-45 187.2 1316 25.2
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 1.0e-44 186.8 1301 25.1
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.5e-43 182.2 1316 24.4
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 3.2e-43 181.8 1296 24.2
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 5.1e-41 174.5 1033 27.0
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 5.1e-41 174.5 1284 24.8
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 6.7e-41 174.1 1261 24.4
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.5e-40 172.9 1309 24.4
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 2.6e-40 172.2 1238 25.3
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 4.4e-40 171.4 1302 24.3
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 7.4e-40 170.6 1290 24.6
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 3.7e-39 168.3 1302 24.6
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 3.7e-39 168.3 1313 23.6
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 4.8e-39 167.9 1295 24.1
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 1.1e-38 166.8 1256 25.5
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 1.1e-38 166.8 1286 24.7
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 3.1e-38 165.2 1296 24.5
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 3.1e-38 165.2 1300 24.8
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 5.3e-38 164.5 1288 24.8
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.7e-36 159.5 551 30.3
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 6.5e-36 157.5 1339 25.7
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 8.5e-36 157.1 1338 24.4
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 4.7e-34 151.4 1297 24.0
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.0e-33 150.2 1117 24.3
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.8e-33 149.4 1265 24.6
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.1e-32 146.7 1253 22.7
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.7e-31 142.9 1295 24.2
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 8.2e-31 140.6 693 27.4
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 5.3e-30 137.9 1280 23.0
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 7.0e-30 137.5 1274 22.1
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 7.0e-30 137.5 1325 23.5
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.2e-29 136.7 1315 23.7
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 8.5e-28 130.6 1305 23.9
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 6.1e-26 124.4 1254 23.8
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.3e-25 122.5 705 26.8
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 3.0e-25 122.1 1276 23.2
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 3.0e-25 122.1 1326 22.7
HanXRQChr09g0276591 Helianthus annuus HOM05D004021 ORTHO05D003767 1.2e-24 120.2 634 27.0
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.7e-23 116.3 474 27.2
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.7e-23 116.3 474 27.2
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.2e-23 115.9 480 27.5
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.1e-22 111.7 239 36.4
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 7.0e-22 110.9 1279 22.0
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.2e-21 110.2 1280 23.2
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 5.9e-21 107.8 1287 23.2
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 2.2e-20 105.9 1263 22.6
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 6.5e-20 104.4 487 26.3
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 1.9e-19 102.8 595 24.9
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 1.9e-19 102.8 1274 22.4
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.5e-19 102.4 704 24.3
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 2.5e-19 102.4 1257 22.6
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 5.5e-19 101.3 118 42.4
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 9.4e-19 100.5 949 25.5
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 1.6e-18 99.8 1295 22.0
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 3.6e-18 98.6 257 33.9
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 6.1e-18 97.8 536 25.9
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 8.0e-18 97.4 327 28.4
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.4e-17 96.7 1261 22.4
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 3.0e-17 95.5 683 24.0
Lj6P329T6 Lonicera japonica HOM05D038820 ORTHO05D003767 4.0e-17 95.1 45 91.1
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 5.2e-17 94.7 366 28.1
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 3.4e-16 92.0 1258 22.4
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.4e-16 92.0 288 28.1
Lj1P960T63 Lonicera japonica HOM05D038820 ORTHO05D003767 7.5e-16 90.9 45 86.7
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 7.5e-16 90.9 1080 21.5
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 2.8e-15 89.0 1260 21.9
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 3.7e-15 88.6 117 41.0
Lj9P163T4 Lonicera japonica HOM05D038820 ORTHO05D003767 8.3e-15 87.4 45 82.2
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 2.4e-14 85.9 427 26.5
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 1.2e-13 83.6 160 38.1
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 2.7e-13 82.4 842 23.3
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 7.7e-13 80.9 92 50.0
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 7.7e-13 80.9 92 50.0
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 7.7e-13 80.9 92 50.0
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.3e-12 79.3 1240 21.5
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 5.0e-12 78.2 170 37.6
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 8.6e-12 77.4 1325 22.2
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 8.6e-12 77.4 142 36.6
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 1.1e-11 77.0 92 46.7
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 1.9e-11 76.3 489 22.3
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 2.5e-11 75.9 92 47.8
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 4.2e-11 75.1 97 46.4
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 5.5e-11 74.7 569 23.4
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 7.2e-11 74.3 981 22.0
Nitab4.5_0000406g0040 Nicotiana tabacum HOM05D004021 ORTHO05D003767 8.0e-10 70.9 83 49.4
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.4e-09 70.1 210 31.4
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.4e-09 70.1 844 22.5
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 1.4e-09 70.1 152 35.5
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.8e-09 69.7 501 23.0
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 3.0e-09 68.9 74 44.6
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 4.0e-09 68.6 490 23.7
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 5.2e-09 68.2 210 31.4
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 6.8e-09 67.8 1293 21.0
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 8.9e-09 67.4 490 23.7
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 1.2e-08 67.0 232 31.0
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 1.5e-08 66.6 73 43.8
VMungo0647G2380 Vigna mungo HOM05D058389 ORTHO05D003767 3.4e-08 65.5 75 45.3
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 5.7e-08 64.7 76 42.1
Sc23g0005170 Simmondsia chinensis HOM05D012164 ORTHO05D003767 9.8e-08 63.9 479 25.1
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 2.2e-07 62.8 203 30.0
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 2.8e-07 62.4 179 30.7
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 3.7e-07 62.0 969 22.1
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 6.3e-07 61.2 77 44.2
Os01g0229300 Oryza sativa ssp. japonica HOM05D018893 ORTHO05D020945 8.3e-07 60.8 233 27.5
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 1.4e-06 60.1 85 36.5
Zm00001eb417870 Zea mays HOM05D018893 ORTHO05D020945 1.4e-06 60.1 106 32.1
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 4.1e-06 58.5 495 23.2
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 4.1e-06 58.5 495 23.2
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 4.1e-06 58.5 495 23.2
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 5.4e-06 58.2 60 41.7
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 9.2e-06 57.4 292 26.0


User provided reference genes

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