Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A586T41 Lonicera japonica HOM05D002558 ORTHO05D002768 9.6e-13 76.6 82 100.0
TWI63G0866 Tripterygium wilfordii HOM05D002558 ORTHO05D002768 7.6e-10 67.0 35 91.4
SGA_v2.0_scaffold103G29960 Striga asiatica HOM05D002558 ORTHO05D002768 1.0e-09 66.6 35 88.6
Cfa013362 Carpinus fangiana HOM05D002558 ORTHO05D002768 1.3e-09 66.2 34 94.1
TWI34G1326 Tripterygium wilfordii HOM05D002558 ORTHO05D002768 1.7e-09 65.9 35 91.4
ECA246G0608 Erigeron canadensis HOM05D005233 ORTHO05D006308 3.8e-09 64.7 35 85.7
unitig_0.g2573 Utricularia gibba HOM05D002558 ORTHO05D002768 3.8e-09 64.7 35 85.7
COL.COLO4_20966 Corchorus olitorius HOM05D000191 ORTHO05D000122 6.5e-09 63.9 34 85.3
Dinv27898 Davidia involucrata HOM05D002558 ORTHO05D002768 6.5e-09 63.9 35 88.6
Ah.10g035040 Amaranthus hybridus HOM05D002558 ORTHO05D002768 8.4e-09 63.5 35 80.0
CAN.G309.76 Capsicum annuum HOM05D002558 ORTHO05D002768 8.4e-09 63.5 35 80.0
Peaxi162Scf01204g00123 Petunia axillaris HOM05D002558 ORTHO05D002768 8.4e-09 63.5 35 85.7
CAN.G309.70 Capsicum annuum HOM05D000001 ORTHO05D011234 1.1e-08 63.2 36 77.8
Lj7C702T4 Lonicera japonica HOM05D002558 ORTHO05D002768 1.1e-08 63.2 35 85.7
CiPaw.08G025400 Carya illinoinensis HOM05D002558 ORTHO05D002768 1.4e-08 62.8 34 88.2
Eucgr.C02926 Eucalyptus grandis HOM05D002558 ORTHO05D002768 1.4e-08 62.8 34 82.4
GSVIVG01035629001 Vitis vinifera HOM05D002558 ORTHO05D002768 1.4e-08 62.8 35 80.0
Ciclev10009557m.g Citrus clementina HOM05D002558 ORTHO05D002768 1.9e-08 62.4 35 85.7
DCAR_000751 Daucus carota HOM05D002558 ORTHO05D002768 1.9e-08 62.4 34 85.3
Migut.A00207 Erythranthe guttata HOM05D002558 ORTHO05D002768 1.9e-08 62.4 35 80.0
Medtr3g110202 Medicago truncatula HOM05D002558 ORTHO05D002768 1.9e-08 62.4 34 85.3
Glyma.14G146200 Glycine max HOM05D002558 ORTHO05D002768 2.5e-08 62.0 34 82.4
Lsat_1_v5_gn_5_33620 Lactuca sativa HOM05D002558 ORTHO05D002768 2.5e-08 62.0 37 78.4
CSS0007775 Camellia sinensis var. sinensis HOM05D002558 ORTHO05D002768 3.2e-08 61.6 35 85.7
Cc08_g09510 Coffea canephora HOM05D002558 ORTHO05D002768 3.2e-08 61.6 35 77.1
Dinv14262 Davidia involucrata HOM05D000078 ORTHO05D002768 3.2e-08 61.6 35 85.7
Gohir.A06G093000 Gossypium hirsutum HOM05D002558 ORTHO05D002768 3.2e-08 61.6 34 82.4
MD15G1093900 Malus domestica HOM05D002558 ORTHO05D002768 3.2e-08 61.6 34 85.3
Nitab4.5_0001567g0160 Nicotiana tabacum HOM05D002558 ORTHO05D002768 3.2e-08 61.6 35 80.0
Solyc11g071220.2 Solanum lycopersicum HOM05D002558 ORTHO05D002768 3.2e-08 61.6 35 80.0
Sopen11g028900 Solanum pennellii HOM05D002558 ORTHO05D002768 3.2e-08 61.6 35 80.0
PGSC0003DMG400018583 Solanum tuberosum HOM05D002558 ORTHO05D002768 3.2e-08 61.6 35 80.0
Ca_15596_v3 Cicer arietinum L. HOM05D002558 ORTHO05D002768 4.2e-08 61.2 33 84.8
Glyma.06G085600 Glycine max HOM05D002558 ORTHO05D002768 4.2e-08 61.2 33 84.8
HanXRQChr08g0234401 Helianthus annuus HOM05D002558 ORTHO05D002768 4.2e-08 61.2 35 77.1
Phvul.009G109500 Phaseolus vulgaris HOM05D002558 ORTHO05D002768 4.2e-08 61.2 33 84.8
Thecc.09G044700 Theobroma cacao HOM05D002558 ORTHO05D002768 4.2e-08 61.2 34 85.3
TPR.G1349 Trifolium pratense HOM05D002558 ORTHO05D002768 4.2e-08 61.2 34 79.4
SalBow4G2117 Salvia bowleyana HOM05D002558 ORTHO05D002768 5.5e-08 60.8 35 77.1
Gohir.D06G092700 Gossypium hirsutum HOM05D002558 ORTHO05D002768 7.1e-08 60.5 34 82.4
Gorai.010G107100 Gossypium raimondii HOM05D002558 ORTHO05D002768 7.1e-08 60.5 34 82.4
THA.LOC104799194 Tarenaya hassleriana HOM05D002558 ORTHO05D002768 7.1e-08 60.5 35 77.1
Actinidia14672 Actinidia chinensis HOM05D002558 ORTHO05D002768 9.3e-08 60.1 35 80.0
MSTRG.25908 Avicennia marina HOM05D002558 ORTHO05D002768 9.3e-08 60.1 35 80.0
Duzib150G0654 Durio zibethinus HOM05D002558 ORTHO05D002768 9.3e-08 60.1 34 85.3
Duzib168G1844 Durio zibethinus HOM05D002558 ORTHO05D002768 9.3e-08 60.1 34 82.4
FvH4_2g35630 Fragaria vesca HOM05D002558 ORTHO05D002768 9.3e-08 60.1 35 77.1
FAN15G3002 Fragaria x ananassa HOM05D002558 ORTHO05D002768 9.3e-08 60.1 35 77.1
FAN20G1950 Fragaria x ananassa HOM05D002558 ORTHO05D002768 9.3e-08 60.1 35 77.1
FAN27G0094 Fragaria x ananassa HOM05D002558 ORTHO05D002768 9.3e-08 60.1 35 77.1
Glyma.04G083900 Glycine max HOM05D002558 ORTHO05D002768 9.3e-08 60.1 33 81.8
Glyma.17G194200 Glycine max HOM05D002558 ORTHO05D002768 9.3e-08 60.1 33 81.8
Nn3g18172 Nelumbo nucifera HOM05D002558 ORTHO05D002768 9.3e-08 60.1 34 82.4
Prupe.1G448700 Prunus persica HOM05D002558 ORTHO05D002768 9.3e-08 60.1 34 82.4
Nn2g11627 Nelumbo nucifera HOM05D002558 ORTHO05D002768 1.2e-07 59.7 34 79.4
Sc09g0009270 Simmondsia chinensis HOM05D002558 ORTHO05D002768 1.2e-07 59.7 35 82.9
MELO3C011144.2 Cucumis melo HOM05D002558 ORTHO05D002768 1.6e-07 59.3 34 82.4
CsaV3_2G030890 Cucumis sativus L. HOM05D002558 ORTHO05D002768 1.6e-07 59.3 34 82.4
Gohir.A08G249984 Gossypium hirsutum HOM05D002558 ORTHO05D002768 1.6e-07 59.3 33 81.8
Gohir.D08G271500 Gossypium hirsutum HOM05D002558 ORTHO05D002768 1.6e-07 59.3 33 81.8
Gorai.004G289900 Gossypium raimondii HOM05D002558 ORTHO05D002768 1.6e-07 59.3 33 81.8
Oeu031547.2 Olea europaea HOM05D002558 ORTHO05D002768 1.6e-07 59.3 34 79.4
AUR62009287 Chenopodium quinoa HOM05D002558 ORTHO05D002768 2.1e-07 58.9 34 79.4
AUR62039693 Chenopodium quinoa HOM05D002558 ORTHO05D002768 2.1e-07 58.9 34 79.4
ClCG08G012260 Citrullus lanatus HOM05D002558 ORTHO05D002768 2.1e-07 58.9 34 79.4
Lalb_Chr08g0243091 Lupinus albus HOM05D002558 ORTHO05D002768 2.1e-07 58.9 34 76.5
Psat5g021640 Pisum sativum HOM05D002558 ORTHO05D002768 2.1e-07 58.9 34 85.3
RcHm_v2.0_Chr6g0306181 Rosa chinensis HOM05D002558 ORTHO05D002768 2.1e-07 58.9 35 74.3
vmacro05369 Vaccinium macrocarpon HOM05D002558 ORTHO05D002768 2.1e-07 58.9 35 77.1
HPP92_024168 Vanilla planifolia HOM05D002558 ORTHO05D002768 2.1e-07 58.9 34 79.4
MBI04_g27061_MAGBIO Magnolia biondii HOM05D002558 ORTHO05D002768 2.7e-07 58.5 36 75.0
Actinidia15737 Actinidia chinensis HOM05D002558 ORTHO05D002768 3.5e-07 58.2 35 77.1
Oeu012198.1 Olea europaea HOM05D002558 ORTHO05D002768 3.5e-07 58.2 37 73.0
QL12p041571 Quercus lobata HOM05D002558 ORTHO05D002768 3.5e-07 58.2 34 85.3
Hund19519 Selenicereus undatus HOM05D002558 ORTHO05D002768 3.5e-07 58.2 35 80.0
arahy.Tifrunner.gnm1.ann1.9C8SD4 Arachis hypogaea HOM05D002558 ORTHO05D002768 4.6e-07 57.8 33 78.8
arahy.Tifrunner.gnm1.ann1.KPU76V Arachis hypogaea HOM05D002558 ORTHO05D002768 4.6e-07 57.8 33 78.8
MD08G1114400 Malus domestica HOM05D002558 ORTHO05D002768 4.6e-07 57.8 34 79.4
Potri.018G043800 Populus trichocarpa HOM05D002558 ORTHO05D002768 4.6e-07 57.8 34 85.3
TAR626G0604 Trochodendron aralioides HOM05D002558 ORTHO05D002768 4.6e-07 57.8 34 76.5
Aqoxy7G01488 Aquilegia oxysepala HOM05D002558 ORTHO05D002768 6.1e-07 57.4 34 73.5
CiPaw.07G204600 Carya illinoinensis HOM05D002558 ORTHO05D002768 6.1e-07 57.4 34 82.4
PGR044G0927 Punica granatum HOM05D002558 ORTHO05D002768 6.1e-07 57.4 34 82.4
Sabra18G0043900 Salix brachista HOM05D002558 ORTHO05D002768 6.1e-07 57.4 34 79.4
Os05g0596200 Oryza sativa ssp. japonica HOM05D002558 ORTHO05D002768 7.9e-07 57.0 33 75.8
Potri.006G238800 Populus trichocarpa HOM05D002558 ORTHO05D002768 7.9e-07 57.0 34 82.4
Sabra06G0186800 Salix brachista HOM05D002558 ORTHO05D002768 7.9e-07 57.0 34 82.4
TPR.G24532 Trifolium pratense HOM05D002558 ORTHO05D002768 7.9e-07 57.0 33 78.8
MBI01_g24461_MAGBIO Magnolia biondii HOM05D002558 ORTHO05D002768 1.0e-06 56.6 34 73.5
VMungo1309G0315 Vigna mungo HOM05D000191 ORTHO05D000122 1.0e-06 56.6 33 78.8
Psat6g037800 Pisum sativum HOM05D002558 ORTHO05D002768 1.3e-06 56.2 33 75.8
CANSAT25G1183 Cannabis sativa HOM05D002558 ORTHO05D002768 1.8e-06 55.8 33 75.8
Lj1g0018167 Lotus japonicus HOM05D002558 ORTHO05D002768 1.8e-06 55.8 34 73.5
CDE08G0456 Ceratophyllum demersum HOM05D002558 ORTHO05D002768 2.3e-06 55.5 34 76.5
Ca_12750_v3 Cicer arietinum L. HOM05D002558 ORTHO05D002768 3.0e-06 55.1 33 72.7
Sed0023683 Sechium edule HOM05D002558 ORTHO05D002768 3.0e-06 55.1 34 76.5
Atru.chr7.2093 Acer truncatum HOM05D002558 ORTHO05D002768 3.9e-06 54.7 37 75.7
Atru.chr7.2107 Acer truncatum HOM05D002558 ORTHO05D002768 3.9e-06 54.7 37 75.7
Lalb_Chr23g0269601 Lupinus albus HOM05D002558 ORTHO05D002768 3.9e-06 54.7 33 75.8
PSO782G1850 Papaver somniferum HOM05D002558 ORTHO05D002768 3.9e-06 54.7 34 73.5
VMungo0251G1540 Vigna mungo HOM05D002558 ORTHO05D002768 3.9e-06 54.7 33 75.8
Zm00001eb345570 Zea mays HOM05D002558 ORTHO05D002768 3.9e-06 54.7 34 67.6
PSO566G0111 Papaver somniferum HOM05D002558 ORTHO05D002768 5.1e-06 54.3 34 73.5
CARHR201620 Cardamine hirsuta HOM05D002558 ORTHO05D002768 6.7e-06 53.9 33 69.7
Phvul.002G267100 Phaseolus vulgaris HOM05D002558 ORTHO05D002768 8.7e-06 53.5 33 75.8


User provided reference genes

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