Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 4.2e-139 498.0 254 100.0
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 2.7e-53 213.0 279 48.7
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 5.2e-41 172.2 223 45.3
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 9.8e-40 167.9 282 41.1
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 5.1e-36 155.6 258 39.5
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 4.3e-35 152.5 227 43.2
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.6e-34 150.6 197 46.7
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 8.1e-34 148.3 207 46.9
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.1e-33 147.9 237 41.8
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.4e-33 147.5 198 45.5
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.8e-33 147.1 237 41.8
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 4.0e-33 146.0 230 43.0
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 8.9e-33 144.8 265 38.1
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 8.9e-33 144.8 237 41.4
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 1.2e-32 144.4 227 41.0
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.6e-32 143.3 227 40.5
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.3e-31 141.0 196 42.3
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 1.7e-31 140.6 237 36.3
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 2.2e-31 140.2 211 44.5
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 6.4e-31 138.7 215 42.3
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 8.4e-31 138.3 231 41.6
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 8.4e-31 138.3 197 42.1
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.4e-30 137.5 229 38.9
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.2e-30 136.3 228 39.9
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 7.1e-30 135.2 254 37.0
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 1.2e-29 134.4 232 37.1
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 2.1e-29 133.7 199 39.7
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.5e-29 132.9 246 39.8
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 1.0e-28 131.3 234 39.7
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.3e-28 131.0 227 38.8
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 1.3e-28 131.0 183 40.4
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 1.3e-28 131.0 226 39.4
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 1.3e-28 131.0 192 42.2
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.7e-28 130.6 193 36.3
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 5.1e-28 129.0 253 40.3
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 5.1e-28 129.0 205 41.0
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 5.1e-28 129.0 198 40.4
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 2.5e-27 126.7 198 39.9
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 3.3e-27 126.3 198 40.4
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 3.3e-27 126.3 298 35.6
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 4.3e-27 125.9 191 38.2
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 7.3e-27 125.2 230 37.8
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 9.6e-27 124.8 227 38.3
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.6e-26 124.0 230 37.4
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.6e-26 124.0 230 37.4
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 1.6e-26 124.0 249 35.3
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 2.8e-26 123.2 238 36.6
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 4.7e-26 122.5 277 34.7
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 6.2e-26 122.1 228 39.9
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 8.1e-26 121.7 248 37.9
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 8.1e-26 121.7 253 36.0
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.1e-25 121.3 172 38.4
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 1.4e-25 120.9 191 40.8
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 1.8e-25 120.6 193 34.7
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 6.9e-25 118.6 159 40.9
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 1.2e-24 117.9 227 35.7
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.5e-24 117.5 213 39.0
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 3.4e-24 116.3 214 37.4
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 4.4e-24 115.9 226 32.7
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 4.4e-24 115.9 175 41.7
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 4.4e-24 115.9 227 37.4
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 4.4e-24 115.9 230 36.5
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 7.6e-24 115.2 231 38.1
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.7e-23 114.0 193 37.3
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.2e-23 113.6 228 38.2
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 2.2e-23 113.6 197 35.0
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 2.9e-23 113.2 220 38.2
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 2.9e-23 113.2 230 37.8
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 3.8e-23 112.8 193 39.4
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 3.8e-23 112.8 231 37.7
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.4e-23 112.1 229 38.4
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.4e-23 112.1 229 38.4
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.4e-23 112.1 229 38.4
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 1.1e-22 111.3 268 34.3
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 1.1e-22 111.3 193 39.4
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.1e-22 111.3 231 34.6
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 1.4e-22 110.9 229 35.8
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 1.9e-22 110.5 237 34.6
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 3.2e-22 109.8 230 34.3
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 4.2e-22 109.4 219 37.9
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 4.2e-22 109.4 178 41.6
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 5.4e-22 109.0 252 32.1
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 7.1e-22 108.6 170 45.3
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 9.3e-22 108.2 226 37.6
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 1.2e-21 107.8 178 39.9
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 2.7e-21 106.7 229 35.4
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 3.5e-21 106.3 230 36.1
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 3.5e-21 106.3 261 33.3
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 7.8e-21 105.1 204 37.7
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 7.8e-21 105.1 255 34.9
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 1.3e-20 104.4 250 32.8
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 1.3e-20 104.4 195 37.4
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 1.7e-20 104.0 201 37.8
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 1.7e-20 104.0 204 37.3
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 2.3e-20 103.6 218 31.7
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 5.1e-20 102.4 227 36.1
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 6.6e-20 102.1 212 30.7
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 8.7e-20 101.7 216 32.9
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 1.1e-19 101.3 215 34.4
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.5e-19 100.1 249 34.5
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 3.3e-19 99.8 196 36.2
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 3.3e-19 99.8 232 28.9
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 4.3e-19 99.4 267 32.2
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 4.3e-19 99.4 249 35.7
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 7.3e-19 98.6 204 34.8
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 7.3e-19 98.6 164 41.5
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 2.8e-18 96.7 223 35.4
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 4.8e-18 95.9 212 35.4
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 8.1e-18 95.1 201 37.3
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 3.1e-17 93.2 221 33.0
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 1.5e-16 90.9 216 31.9
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 7.6e-16 88.6 190 33.2
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 9.9e-16 88.2 251 32.3
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 9.9e-16 88.2 105 47.6
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 9.9e-16 88.2 193 32.1
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 1.3e-15 87.8 111 50.5
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 2.2e-15 87.0 150 40.0
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 2.9e-15 86.7 198 34.8
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 4.9e-15 85.9 201 36.3
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 6.4e-15 85.5 196 34.7
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 7.1e-14 82.0 170 31.8
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 1.2e-13 81.3 215 33.0
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 7.9e-13 78.6 143 37.1
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 7.4e-11 72.0 123 39.0
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 1.3e-10 71.2 196 33.2
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 1.1e-09 68.2 135 37.8
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 1.4e-09 67.8 205 30.2
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 9.0e-09 65.1 87 49.4
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 1.2e-08 64.7 225 28.9
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 2.0e-08 63.9 199 25.1
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 3.4e-08 63.2 245 25.3
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 3.4e-08 63.2 218 28.9
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 4.5e-08 62.8 199 29.1
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 9.9e-08 61.6 199 29.1
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 2.2e-07 60.5 210 31.0
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 2.9e-07 60.1 207 25.6
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 4.9e-07 59.3 188 29.3
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 6.4e-07 58.9 206 25.7
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 3.2e-06 56.6 200 26.0
Nn2g10296 Nelumbo nucifera HOM05D003589 ORTHO05D005170 9.3e-06 55.1 86 40.7
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 9.3e-06 55.1 183 26.2


User provided reference genes

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