Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A53T101 Lonicera japonica HOM05D003369 ORTHO05D004089 1.1e-82 310.1 182 100.0
Actinidia31631 Actinidia chinensis HOM05D003369 ORTHO05D004089 2.3e-51 206.1 181 72.9
Actinidia13643 Actinidia chinensis HOM05D003369 ORTHO05D004089 5.8e-50 201.4 181 71.3
vmacro06898 Vaccinium macrocarpon HOM05D003369 ORTHO05D004089 6.0e-47 191.4 178 69.7
Dinv34494 Davidia involucrata HOM05D003369 ORTHO05D004089 1.0e-46 190.7 125 75.2
RcHm_v2.0_Chr4g0447001 Rosa chinensis HOM05D003369 ORTHO05D004089 6.6e-46 188.0 182 67.0
Eucgr.J00108 Eucalyptus grandis HOM05D003369 ORTHO05D004089 8.6e-46 187.6 182 67.6
Thecc.10G184000 Theobroma cacao HOM05D003369 ORTHO05D004089 1.1e-45 187.2 183 71.6
Ciclev10030740m.g Citrus clementina HOM05D003369 ORTHO05D004089 2.5e-45 186.0 181 67.4
Aqoxy3G00685 Aquilegia oxysepala HOM05D003369 ORTHO05D004089 9.5e-45 184.1 183 65.6
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 2.1e-44 183.0 178 66.3
COL.COLO4_19461 Corchorus olitorius HOM05D003369 ORTHO05D004089 2.8e-44 182.6 179 69.8
Nn5g26838 Nelumbo nucifera HOM05D003369 ORTHO05D004089 3.6e-44 182.2 182 65.4
Manes.10G002000 Manihot esculenta HOM05D003369 ORTHO05D004089 1.8e-43 179.9 178 67.4
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 1.8e-43 179.9 178 66.9
Duzib114G1008 Durio zibethinus HOM05D003369 ORTHO05D004089 4.0e-43 178.7 185 68.1
MD13G1002600 Malus domestica HOM05D003369 ORTHO05D004089 8.9e-43 177.6 186 67.2
Hma1.2p1_0264F.1_g106040 Hydrangea macrophylla HOM05D003369 ORTHO05D004089 1.2e-42 177.2 184 66.8
TAR633G0919 Trochodendron aralioides HOM05D003369 ORTHO05D004089 1.5e-42 176.8 180 61.1
GSVIVG01032663001 Vitis vinifera HOM05D003369 ORTHO05D004089 2.2e-41 172.9 182 68.7
Atru.chr12.204 Acer truncatum HOM05D003369 ORTHO05D004089 3.7e-41 172.2 172 70.3
DCAR_007356 Daucus carota HOM05D003369 ORTHO05D004089 3.7e-41 172.2 182 63.2
Gohir.D06G186800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 4.9e-41 171.8 176 63.6
CSS0036715 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 8.3e-41 171.0 172 62.2
CANSAT54G1399 Cannabis sativa HOM05D003369 ORTHO05D004089 8.3e-41 171.0 181 66.3
Potri.013G090500 Populus trichocarpa HOM05D003369 ORTHO05D004089 8.3e-41 171.0 186 65.1
Gohir.D05G279200 Gossypium hirsutum HOM05D003369 ORTHO05D004089 1.9e-40 169.9 183 65.0
Gorai.009G292700 Gossypium raimondii HOM05D003369 ORTHO05D004089 1.9e-40 169.9 183 65.0
MD00G1126900 Malus domestica HOM05D003369 ORTHO05D004089 2.4e-40 169.5 185 64.9
Prupe.1G349800 Prunus persica HOM05D003369 ORTHO05D004089 2.4e-40 169.5 186 63.4
Gohir.A05G277600 Gossypium hirsutum HOM05D003369 ORTHO05D004089 3.2e-40 169.1 183 65.6
Cpa.g.sc19.47 Carica papaya HOM05D003369 ORTHO05D004089 5.4e-40 168.3 187 63.6
Gorai.010G219100 Gossypium raimondii HOM05D003369 ORTHO05D004089 5.4e-40 168.3 177 65.0
Ca_09969_v3 Cicer arietinum L. HOM05D003369 ORTHO05D004089 7.1e-40 167.9 180 61.7
Gohir.A06G179800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 7.1e-40 167.9 166 65.7
FvH4_4g37220 Fragaria vesca HOM05D003369 ORTHO05D004089 1.2e-39 167.2 182 65.9
Haze_05901 Corylus avellana HOM05D003369 ORTHO05D004089 1.6e-39 166.8 178 64.6
Manes.07G142600 Manihot esculenta HOM05D003369 ORTHO05D004089 1.6e-39 166.8 177 65.0
Nitab4.5_0000171g0170 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.6e-39 166.8 199 57.3
PGSC0003DMG400016657 Solanum tuberosum HOM05D003369 ORTHO05D004089 1.6e-39 166.8 199 54.8
Peaxi162Scf00739g00425 Petunia axillaris HOM05D003369 ORTHO05D004089 2.1e-39 166.4 211 53.1
PGR044G0140 Punica granatum HOM05D003369 ORTHO05D004089 2.1e-39 166.4 181 64.6
Glyma.09G252000 Glycine max HOM05D003369 ORTHO05D004089 2.7e-39 166.0 177 62.1
Lj5g0006652 Lotus japonicus HOM05D003369 ORTHO05D004089 3.5e-39 165.6 181 61.9
Medtr6g086565 Medicago truncatula HOM05D003369 ORTHO05D004089 3.5e-39 165.6 167 64.7
FAN17G2799 Fragaria x ananassa HOM05D003369 ORTHO05D004089 4.6e-39 165.2 183 65.6
DCAR_005880 Daucus carota HOM05D003369 ORTHO05D020257 1.0e-38 164.1 182 62.1
TWI09G0152 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 1.0e-38 164.1 181 58.6
Solyc06g048890.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 3.0e-38 162.5 195 54.9
Sopen06g015200 Solanum pennellii HOM05D003369 ORTHO05D004089 3.0e-38 162.5 199 57.3
ECA232G1960 Erigeron canadensis HOM05D003369 ORTHO05D004089 3.9e-38 162.2 165 63.0
VMungo1383G1217 Vigna mungo HOM05D003369 ORTHO05D004089 3.9e-38 162.2 176 60.8
TWI53G1724 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 6.6e-38 161.4 182 56.0
Potri.019G059200 Populus trichocarpa HOM05D003369 ORTHO05D004089 1.1e-37 160.6 186 62.4
QL05p063633 Quercus lobata HOM05D003369 ORTHO05D004089 2.5e-37 159.5 182 60.4
BcaB06g29170 Brassica carinata HOM05D003369 ORTHO05D004089 9.5e-37 157.5 164 67.7
ECA238G1180 Erigeron canadensis HOM05D003369 ORTHO05D004089 1.2e-36 157.1 182 63.2
Glyma.20G219600 Glycine max HOM05D003369 ORTHO05D004089 1.2e-36 157.1 185 58.4
HanXRQChr14g0460671 Helianthus annuus HOM05D003369 ORTHO05D004089 1.2e-36 157.1 181 64.1
Lalb_Chr02g0149391 Lupinus albus HOM05D003369 ORTHO05D004089 2.1e-36 156.4 156 63.5
A03p22890 Brassica napus HOM05D003369 ORTHO05D004089 2.8e-36 156.0 164 67.1
Phvul.008G055600 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 2.8e-36 156.0 177 58.8
Glyma.18G240600 Glycine max HOM05D003369 ORTHO05D004089 3.6e-36 155.6 176 60.8
Sc05g0004490 Simmondsia chinensis HOM05D003369 ORTHO05D004089 4.7e-36 155.2 182 62.6
arahy.Tifrunner.gnm1.ann1.ABG2GV Arachis hypogaea HOM05D003369 ORTHO05D004089 6.2e-36 154.8 181 61.3
arahy.Tifrunner.gnm1.ann1.HI4H5F Arachis hypogaea HOM05D003369 ORTHO05D004089 6.2e-36 154.8 181 61.3
CDE07G0902 Ceratophyllum demersum HOM05D003369 ORTHO05D004089 6.2e-36 154.8 182 62.1
CAN.G203.55 Capsicum annuum HOM05D003369 ORTHO05D004089 8.1e-36 154.5 198 56.1
Nitab4.5_0011372g0040 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.4e-35 153.7 201 54.7
CiPaw.09G143000 Carya illinoinensis HOM05D003369 ORTHO05D004089 2.3e-35 152.9 180 63.3
MBI15_g39391_MAGBIO Magnolia biondii HOM05D003369 ORTHO05D004089 2.3e-35 152.9 206 54.9
BcaB01g03521 Brassica carinata HOM05D003369 ORTHO05D004089 3.1e-35 152.5 164 66.5
C03p27140 Brassica napus HOM05D003369 ORTHO05D004089 3.1e-35 152.5 164 66.5
Sed0008109 Sechium edule HOM05D003369 ORTHO05D004089 3.1e-35 152.5 176 59.7
CiPaw.10G110000 Carya illinoinensis HOM05D003369 ORTHO05D004089 4.0e-35 152.1 182 64.3
FAN07G2686 Fragaria x ananassa HOM05D003369 ORTHO05D004089 4.0e-35 152.1 183 62.8
Nitab4.5_0000375g0250 Nicotiana tabacum HOM05D003369 ORTHO05D004089 4.0e-35 152.1 198 54.5
SalBow3G2694 Salvia bowleyana HOM05D003369 ORTHO05D004089 4.0e-35 152.1 201 51.7
VMungo0720G1409 Vigna mungo HOM05D003369 ORTHO05D004089 4.0e-35 152.1 181 59.7
BcaC01g05384 Brassica carinata HOM05D003369 ORTHO05D004089 5.2e-35 151.8 164 66.5
EL10Ac3g06746 Beta vulgaris HOM05D003369 ORTHO05D004089 8.9e-35 151.0 182 60.4
BraA03t11513Z Brassica rapa HOM05D003369 ORTHO05D004089 8.9e-35 151.0 170 65.3
Sp4g23040 Schrenkiella parvula HOM05D003369 ORTHO05D004089 8.9e-35 151.0 164 65.9
TPR.G35277 Trifolium pratense HOM05D003369 ORTHO05D004089 8.9e-35 151.0 182 61.5
PSO017G0651 Papaver somniferum HOM05D003369 ORTHO05D004089 1.2e-34 150.6 176 59.7
AL4G38590 Arabidopsis lyrata HOM05D003369 ORTHO05D004089 1.5e-34 150.2 165 67.9
AT2G40730 Arabidopsis thaliana HOM05D003369 ORTHO05D004089 1.5e-34 150.2 165 66.7
Nn2g10283 Nelumbo nucifera HOM05D003369 ORTHO05D004089 4.4e-34 148.7 162 63.6
THA.LOC104824367 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 4.4e-34 148.7 169 62.1
Phvul.010G077634 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 7.6e-34 147.9 178 60.1
BolC3t15095H Brassica oleracea HOM05D003369 ORTHO05D004089 9.9e-34 147.5 170 64.7
PSO170G0385 Papaver somniferum HOM05D003369 ORTHO05D004089 9.9e-34 147.5 176 58.0
MELO3C022652.2 Cucumis melo HOM05D003369 ORTHO05D004089 1.3e-33 147.1 181 61.9
Lalb_Chr06g0168441 Lupinus albus HOM05D003369 ORTHO05D004089 1.7e-33 146.7 151 62.3
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 1.7e-33 146.7 183 59.0
ATR1127G027 Amborella trichopoda HOM05D003369 ORTHO05D004089 2.2e-33 146.4 170 64.7
CsaV3_3G030590 Cucumis sativus L. HOM05D003369 ORTHO05D004089 2.9e-33 146.0 182 61.5
ClCG11G010900 Citrullus lanatus HOM05D003369 ORTHO05D004089 1.1e-32 144.1 179 59.8
Psat0s4462g0240 Pisum sativum HOM05D001932 ORTHO05D004089 1.1e-32 144.1 126 61.9
A04p31100 Brassica napus HOM05D003369 ORTHO05D004089 4.1e-32 142.1 164 64.0
BraA04t18565Z Brassica rapa HOM05D003369 ORTHO05D004089 4.1e-32 142.1 164 64.0
BcaC02g07330 Brassica carinata HOM05D003369 ORTHO05D004089 2.1e-31 139.8 164 64.6
C04p68490 Brassica napus HOM05D003369 ORTHO05D004089 2.1e-31 139.8 164 64.6
Oeu018743.1 Olea europaea HOM05D003369 ORTHO05D004089 2.1e-31 139.8 201 56.7
AUR62042224 Chenopodium quinoa HOM05D003369 ORTHO05D004089 3.5e-31 139.0 178 59.6
BolC4t28349H Brassica oleracea HOM05D003369 ORTHO05D004089 6.0e-31 138.3 164 64.0
Oeu063993.2 Olea europaea HOM05D003369 ORTHO05D004089 1.0e-30 137.5 120 65.0
Thhalv10016269m.g Eutrema salsugineum HOM05D003369 ORTHO05D004089 1.3e-30 137.1 164 62.8
SGA_v2.0_scaffold327G48760 Striga asiatica HOM05D003369 ORTHO05D004089 1.3e-30 137.1 186 47.3
AUR62037781 Chenopodium quinoa HOM05D003369 ORTHO05D004089 1.7e-30 136.7 178 58.4
Carub.0004s2301 Capsella rubella HOM05D003369 ORTHO05D004089 3.9e-30 135.6 164 62.8
Lsat_1_v5_gn_2_126361 Lactuca sativa HOM05D003369 ORTHO05D004089 3.9e-30 135.6 102 71.6
CARHR135820 Cardamine hirsuta HOM05D003369 ORTHO05D004089 6.6e-30 134.8 164 62.8
HanXRQChr15g0493711 Helianthus annuus HOM05D003369 ORTHO05D004089 8.6e-30 134.4 170 59.4
PGSC0003DMG400011657 Solanum tuberosum HOM05D003369 ORTHO05D004089 1.5e-29 133.7 196 52.6
THA.LOC104814068 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 3.3e-29 132.5 192 53.6
Migut.F00574 Erythranthe guttata HOM05D003369 ORTHO05D004089 4.3e-29 132.1 201 51.7
Medtr1g078370 Medicago truncatula HOM05D003369 ORTHO05D004089 5.6e-29 131.7 180 48.3
Aa31LG3G1410 Aethionema arabicum HOM05D003369 ORTHO05D004089 9.6e-29 131.0 162 63.0
MSTRG.8884 Avicennia marina HOM05D003369 ORTHO05D004089 1.2e-28 130.6 105 62.9
BcaC02g12730 Brassica carinata HOM05D003369 ORTHO05D004089 6.2e-28 128.3 158 61.4
Ah.13g075100 Amaranthus hybridus HOM05D003369 ORTHO05D004089 8.1e-28 127.9 177 58.8
Duzib106G0164 Durio zibethinus HOM05D003369 ORTHO05D004089 1.1e-27 127.5 166 62.0
Sabra19G0074300 Salix brachista HOM05D003369 ORTHO05D004089 1.8e-27 126.7 268 42.9
MSTRG.27258 Avicennia marina HOM05D003369 ORTHO05D004089 2.0e-26 123.2 204 49.5
CDE06G0307 Ceratophyllum demersum HOM05D001225 ORTHO05D001252 2.6e-26 122.9 121 53.7
Zm00001eb368920 Zea mays HOM05D003369 ORTHO05D004089 9.9e-26 120.9 188 51.6
CSS0040829 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 6.4e-25 118.2 83 69.9
Sopen05g030740 Solanum pennellii HOM05D003369 ORTHO05D004089 1.4e-24 117.1 173 53.8
Lsat_1_v5_gn_8_20221 Lactuca sativa HOM05D003369 ORTHO05D004089 1.9e-24 116.7 100 66.0
Zm00001eb149610 Zea mays HOM05D003369 ORTHO05D004089 5.4e-24 115.2 189 54.0
Solyc05g052200.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 9.3e-24 114.4 173 53.2
Os01g0819900 Oryza sativa ssp. japonica HOM05D003369 ORTHO05D004089 1.2e-23 114.0 189 50.3
Lsat_1_v5_gn_8_135680 Lactuca sativa HOM05D003369 ORTHO05D004089 2.7e-23 112.8 100 64.0
unitig_0.g2517 Utricularia gibba HOM05D003369 ORTHO05D004089 1.7e-22 110.2 203 44.8
Lsat_1_v5_gn_8_162600 Lactuca sativa HOM05D003369 ORTHO05D004089 2.3e-22 109.8 100 64.0
Lsat_1_v5_gn_9_60180 Lactuca sativa HOM05D003369 ORTHO05D004089 1.1e-21 107.5 181 50.3
HPP92_018085 Vanilla planifolia HOM05D003369 ORTHO05D004089 2.0e-18 96.7 184 48.9
SEGI_10703 Sequoiadendron giganteum HOM05D003369 ORTHO05D004089 2.6e-18 96.3 192 35.4
Lsat_1_v5_gn_4_53561 Lactuca sativa HOM05D003369 ORTHO05D004089 1.1e-16 90.9 109 53.2
Sc05g0004500 Simmondsia chinensis HOM05D003369 ORTHO05D004089 1.6e-15 87.0 72 59.7
unitig_88.g27820 Utricularia gibba HOM05D003369 ORTHO05D004089 5.1e-14 82.0 109 45.0
Pp3c3_22310 Physcomitrium patens HOM05D003369 ORTHO05D004089 1.6e-12 77.0 176 37.5
FAN12G0023 Fragaria x ananassa HOM05D003369 ORTHO05D020257 6.9e-11 71.6 96 66.7
Mapoly0025s0051 Marchantia polymorpha HOM05D003369 ORTHO05D004089 6.4e-09 65.1 185 34.6
CSS0000037 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D020257 9.3e-08 61.2 96 63.5


User provided reference genes

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