Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 1.8e-96 355.9 184 100.0
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 9.3e-32 141.0 107 65.4
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.6e-31 140.2 106 67.0
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.6e-31 140.2 106 67.0
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 2.1e-31 139.8 110 62.7
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 3.5e-31 139.0 106 67.0
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 4.6e-31 138.7 106 66.0
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 1.8e-30 136.7 106 65.1
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 2.3e-30 136.3 106 64.2
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 5.1e-30 135.2 106 64.2
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 6.7e-30 134.8 106 64.2
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 6.7e-30 134.8 106 66.0
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.1e-29 134.0 106 64.2
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 1.1e-29 134.0 106 63.2
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 2.5e-29 132.9 106 63.2
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 3.3e-29 132.5 106 63.2
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 4.3e-29 132.1 111 59.5
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 1.3e-28 130.6 106 64.2
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 1.6e-28 130.2 106 63.2
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 2.2e-28 129.8 106 60.4
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 3.7e-28 129.0 106 62.3
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 3.7e-28 129.0 103 65.0
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 3.7e-28 129.0 106 62.3
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 4.8e-28 128.6 106 63.2
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 6.3e-28 128.3 106 62.3
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 6.3e-28 128.3 106 62.3
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 6.3e-28 128.3 106 62.3
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 6.3e-28 128.3 108 61.1
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 6.3e-28 128.3 108 61.1
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 6.3e-28 128.3 106 62.3
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 8.2e-28 127.9 106 59.4
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 1.1e-27 127.5 106 60.4
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.4e-27 127.1 106 61.3
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 1.8e-27 126.7 109 63.3
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 1.8e-27 126.7 106 59.4
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 2.4e-27 126.3 107 59.8
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 2.4e-27 126.3 111 57.7
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 3.1e-27 125.9 106 60.4
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 3.1e-27 125.9 106 60.4
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.1e-27 125.9 113 59.3
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 5.3e-27 125.2 106 58.5
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 5.3e-27 125.2 106 60.4
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 6.9e-27 124.8 106 60.4
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 9.0e-27 124.4 106 58.5
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.2e-26 124.0 106 58.5
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.2e-26 124.0 105 61.9
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 1.2e-26 124.0 106 58.5
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.5e-26 123.6 106 61.3
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 2.0e-26 123.2 106 59.4
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 2.0e-26 123.2 106 58.5
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 2.0e-26 123.2 106 59.4
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 2.6e-26 122.9 106 55.7
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.6e-26 122.9 108 55.6
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 3.4e-26 122.5 106 57.5
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 7.7e-26 121.3 106 56.6
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 7.7e-26 121.3 101 59.4
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.0e-25 120.9 106 57.5
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 1.3e-25 120.6 106 58.5
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 1.3e-25 120.6 113 56.6
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 1.7e-25 120.2 106 57.5
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 1.7e-25 120.2 106 56.6
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 2.9e-25 119.4 96 59.4
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 3.8e-25 119.0 106 55.7
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 3.8e-25 119.0 106 55.7
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 5.0e-25 118.6 106 55.7
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 6.5e-25 118.2 106 56.6
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 6.5e-25 118.2 107 57.0
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 6.5e-25 118.2 106 52.8
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 1.1e-24 117.5 107 56.1
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.4e-24 117.1 94 60.6
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 1.9e-24 116.7 106 55.7
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 1.9e-24 116.7 106 55.7
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 1.9e-24 116.7 106 55.7
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 1.9e-24 116.7 106 55.7
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 1.9e-24 116.7 125 52.8
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.5e-24 116.3 106 55.7
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.5e-24 116.3 106 55.7
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 2.5e-24 116.3 106 55.7
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 2.5e-24 116.3 106 55.7
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 2.5e-24 116.3 106 55.7
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 3.2e-24 115.9 106 55.7
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 3.2e-24 115.9 106 56.6
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 3.2e-24 115.9 106 54.7
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 5.5e-24 115.2 107 56.1
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 5.5e-24 115.2 104 54.8
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 7.2e-24 114.8 104 53.8
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 7.2e-24 114.8 111 53.2
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 9.4e-24 114.4 106 54.7
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 9.4e-24 114.4 104 53.8
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 1.6e-23 113.6 106 56.6
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 1.6e-23 113.6 106 55.7
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 1.6e-23 113.6 106 53.8
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 2.1e-23 113.2 106 54.7
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 6.1e-23 111.7 70 72.9
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 1.0e-22 110.9 106 53.8
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 1.4e-22 110.5 106 54.7
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 2.3e-22 109.8 106 52.8
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 3.9e-22 109.0 114 51.8
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 3.9e-22 109.0 106 52.8
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 6.7e-22 108.2 103 56.3
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 8.8e-22 107.8 105 53.3
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.5e-21 107.1 95 54.7
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 1.5e-21 107.1 106 51.9
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 1.5e-21 107.1 77 66.2
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 4.3e-21 105.5 106 52.8
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 5.7e-21 105.1 106 52.8
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 5.7e-21 105.1 106 52.8
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 5.7e-21 105.1 94 61.7
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 7.4e-21 104.8 108 50.9
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 7.4e-21 104.8 106 50.9
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.3e-20 104.0 108 47.2
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 1.3e-20 104.0 103 53.4
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 2.2e-20 103.2 106 50.9
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 3.7e-20 102.4 67 68.7
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 8.2e-20 101.3 106 50.0
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.1e-19 100.9 106 50.0
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 1.8e-19 100.1 106 47.2
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 2.4e-19 99.8 80 66.2
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.4e-19 99.8 106 48.1
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 4.1e-19 99.0 106 49.1
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 1.2e-18 97.4 107 43.9
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 2.6e-18 96.3 67 65.7
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 7.7e-18 94.7 67 64.2
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 5.0e-17 92.0 123 43.9
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 9.4e-16 87.8 48 81.2
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 3.0e-14 82.8 108 41.7
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 3.9e-14 82.4 106 42.5
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 4.4e-13 79.0 87 51.7
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 5.3e-11 72.0 43 69.8
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 1.0e-09 67.8 75 42.7
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 1.3e-09 67.4 42 73.8
Zm00001eb290470 Zea mays HOM05D004876 ORTHO05D005488 6.7e-06 55.1 44 52.3
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 8.8e-06 54.7 71 38.0


User provided reference genes

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