Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 2.5e-259 898.3 459 100.0
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 8.2e-194 680.6 461 76.1
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.2e-192 676.8 424 81.1
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 6.5e-191 671.0 444 77.5
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 8.5e-191 670.6 447 76.7
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.1e-190 670.2 449 76.2
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 4.2e-190 668.3 461 76.1
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 9.3e-190 667.2 448 77.0
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 4.6e-189 664.8 441 78.0
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 2.3e-188 662.5 450 75.3
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 1.9e-187 659.4 462 73.2
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.5e-187 659.1 450 75.8
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 3.3e-187 658.7 441 76.9
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 2.2e-186 656.0 441 76.2
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 8.2e-186 654.1 444 77.3
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 2.4e-185 652.5 446 75.6
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 9.1e-185 650.6 446 74.2
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 1.0e-183 647.1 421 78.1
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 8.5e-183 644.0 424 76.7
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 8.5e-183 644.0 465 73.8
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.4e-182 643.3 462 73.6
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 3.2e-182 642.1 463 73.2
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 5.5e-182 641.3 440 75.0
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 1.6e-181 639.8 444 74.1
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 2.1e-181 639.4 499 67.9
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 4.6e-181 638.3 440 75.2
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 6.1e-181 637.9 438 74.7
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 3.0e-180 635.6 441 75.1
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 1.1e-179 633.6 424 76.7
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 1.1e-179 633.6 407 80.6
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 4.4e-179 631.7 428 74.5
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 7.4e-179 630.9 424 76.4
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 1.3e-178 630.2 447 72.9
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 1.3e-178 630.2 444 73.2
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 1.7e-178 629.8 452 72.8
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 2.8e-178 629.0 445 71.7
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 4.8e-178 628.2 452 72.8
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 6.3e-178 627.9 446 73.3
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 8.2e-178 627.5 421 76.7
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 8.2e-178 627.5 446 72.9
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 3.1e-177 625.5 427 76.1
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 4.5e-176 621.7 418 75.8
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 7.7e-176 620.9 418 75.6
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 7.7e-176 620.9 426 76.8
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 1.3e-175 620.2 417 74.3
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 2.2e-175 619.4 419 75.9
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 1.1e-174 617.1 420 75.0
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 1.4e-174 616.7 420 74.8
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 4.2e-174 615.1 421 73.4
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 9.4e-174 614.0 420 74.5
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 4.7e-173 611.7 418 74.6
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 6.1e-173 611.3 420 73.8
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 1.4e-172 610.1 439 70.4
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 1.4e-172 610.1 418 73.9
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 2.3e-172 609.4 418 73.9
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 3.0e-172 609.0 418 74.4
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 3.9e-172 608.6 420 73.6
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 4.4e-171 605.1 404 75.7
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 5.7e-171 604.7 423 71.4
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 7.4e-171 604.4 410 75.6
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.2e-170 602.8 400 78.5
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 4.2e-166 588.6 374 79.9
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 3.0e-164 582.4 400 74.2
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 2.0e-163 579.7 437 70.3
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 2.6e-163 579.3 424 72.6
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 2.8e-162 575.9 420 71.2
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 7.0e-161 571.2 381 76.1
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 7.0e-161 571.2 368 78.0
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 1.6e-160 570.1 384 76.0
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.7e-160 569.3 371 78.7
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 1.0e-159 567.4 437 68.6
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.2e-157 560.5 418 70.3
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 6.1e-157 558.1 427 68.1
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 1.4e-156 557.0 414 73.2
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 1.8e-156 556.6 406 70.7
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 4.0e-156 555.4 457 64.1
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 9.8e-155 550.8 419 70.2
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 5.5e-150 535.0 448 65.2
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 5.5e-150 535.0 430 64.4
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 5.2e-148 528.5 364 72.5
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 2.2e-146 523.1 354 77.7
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 1.8e-145 520.0 443 63.2
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 7.0e-145 518.1 443 63.2
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 9.2e-145 517.7 378 70.9
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 2.7e-144 516.2 457 62.1
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 1.3e-143 513.8 346 77.5
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 9.5e-142 507.7 458 60.9
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.2e-141 507.3 420 65.5
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 6.1e-141 505.0 455 62.6
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.1e-137 494.2 377 66.3
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 1.9e-134 483.4 445 59.1
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 5.6e-134 481.9 458 59.0
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.8e-132 476.9 394 63.2
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 3.4e-131 472.6 387 64.6
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 7.8e-128 461.5 446 58.1
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 2.1e-125 453.4 294 77.2
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 1.1e-124 451.1 375 62.9
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.4e-121 439.9 351 66.4
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 3.2e-121 439.5 416 57.5
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 9.2e-121 438.0 325 69.8
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 9.2e-121 438.0 325 69.8
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.3e-119 434.1 341 66.6
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 3.3e-118 429.5 392 58.9
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.8e-117 426.4 310 73.5
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 4.4e-107 392.5 252 78.6
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 2.9e-98 363.2 422 47.6
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 3.0e-95 353.2 384 50.5
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 7.4e-94 348.6 414 45.9
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 4.9e-90 335.9 321 60.1
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.7e-88 330.1 228 75.9
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 8.7e-87 325.1 232 69.4
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.8e-77 293.5 353 46.7
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 8.2e-77 292.0 228 70.2
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 4.1e-68 263.1 211 69.2
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 3.0e-63 246.9 171 76.6
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.4e-57 228.0 369 42.0
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.7e-53 214.5 200 57.0
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 2.2e-53 214.2 566 30.2
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 2.6e-51 207.2 319 43.3
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.3e-50 204.9 339 39.2
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 4.7e-48 196.4 367 37.3
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 9.7e-46 188.7 149 68.5
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 2.2e-45 187.6 179 54.7
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 3.8e-42 176.8 160 61.9
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 1.9e-41 174.5 419 33.7
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 3.6e-40 170.2 97 89.7
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.7e-37 160.2 119 71.4
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 4.5e-35 153.3 86 84.9
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 7.2e-33 146.0 177 48.0
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 6.3e-29 132.9 122 54.9
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.4e-28 129.8 97 70.1
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 8.6e-26 122.5 471 29.1
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 9.5e-25 119.0 89 71.9
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 1.4e-20 105.1 68 75.0
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 4.1e-20 103.6 67 79.1
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.6e-19 100.1 62 83.9
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.6e-19 100.1 62 83.9
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 6.0e-19 99.8 54 81.5
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 8.6e-18 95.9 56 87.5
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.1e-15 87.4 57 84.2
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.2e-14 85.5 56 80.4
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 5.8e-14 83.2 66 65.2
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 1.6e-11 75.1 63 66.7
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.5e-09 67.8 78 50.0
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.5e-09 67.8 78 50.0
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 5.6e-09 66.6 59 66.1
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 2.8e-08 64.3 53 64.2
GSVIVG01037115001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.8e-08 64.3 52 61.5
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 6.8e-07 59.7 181 28.2
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.4e-06 57.0 41 65.9


User provided reference genes

Program Settings