Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 3.8e-213 744.6 378 100.0
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 8.7e-125 451.1 384 65.9
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 7.3e-124 448.0 384 65.6
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 2.1e-123 446.4 384 65.1
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.3e-120 437.2 381 64.6
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 1.7e-120 436.8 386 63.2
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.4e-119 433.0 384 63.3
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 4.2e-119 432.2 404 60.9
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 3.9e-117 425.6 379 62.3
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 5.1e-117 425.2 384 62.2
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 5.1e-117 425.2 385 62.1
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 6.2e-115 418.3 385 61.8
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 8.1e-115 417.9 384 62.2
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 5.3e-114 415.2 382 61.0
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.7e-112 410.2 379 61.2
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 2.9e-112 409.5 377 58.9
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 3.8e-112 409.1 387 60.7
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 4.9e-112 408.7 377 58.9
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 3.2e-111 406.0 390 60.3
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 5.5e-111 405.2 384 60.2
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 1.2e-110 404.1 391 60.4
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.2e-110 404.1 382 61.3
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 3.5e-110 402.5 388 60.1
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 3.5e-110 402.5 384 59.9
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 7.9e-110 401.4 396 59.6
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.0e-109 401.0 393 58.3
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 2.3e-109 399.8 385 59.2
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 3.0e-109 399.4 386 60.1
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 1.1e-108 397.5 376 61.4
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.5e-108 397.1 427 54.3
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 2.5e-108 396.4 386 58.5
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 2.5e-108 396.4 396 58.6
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 4.3e-108 395.6 383 60.6
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.6e-107 393.7 382 59.4
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.6e-107 393.7 382 59.4
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 4.8e-107 392.1 400 57.0
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 6.2e-107 391.7 399 57.9
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 1.4e-106 390.6 384 59.4
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 4.0e-106 389.0 370 59.7
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 5.3e-106 388.7 403 57.6
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 6.9e-106 388.3 392 57.1
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 6.9e-106 388.3 381 57.5
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 9.0e-106 387.9 381 58.3
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 9.0e-106 387.9 386 57.8
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.2e-105 387.5 378 58.7
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.2e-105 387.5 389 58.4
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 1.2e-105 387.5 386 57.3
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 2.0e-105 386.7 383 59.3
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 3.4e-105 386.0 385 58.4
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 3.4e-105 386.0 500 49.4
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 3.4e-105 386.0 388 57.5
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 5.8e-105 385.2 385 58.4
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 5.8e-105 385.2 378 59.0
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 1.0e-104 384.4 378 58.7
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 1.0e-104 384.4 385 58.2
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 1.3e-104 384.0 383 58.5
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.3e-104 384.0 377 58.1
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 1.7e-104 383.6 382 58.6
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 3.8e-104 382.5 384 58.3
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 8.4e-104 381.3 363 62.3
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.4e-104 381.3 363 62.3
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 1.1e-103 380.9 381 57.2
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 4.2e-103 379.0 376 57.7
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.2e-102 377.5 363 62.0
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 6.0e-102 375.2 389 56.3
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 7.9e-102 374.8 381 57.0
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 7.9e-102 374.8 381 57.0
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 7.9e-102 374.8 397 57.2
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 1.0e-101 374.4 380 56.1
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.8e-101 373.6 381 57.0
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 3.0e-101 372.9 394 54.8
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 3.0e-101 372.9 383 58.0
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 5.1e-101 372.1 391 57.0
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 8.7e-101 371.3 456 50.2
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 7.4e-100 368.2 390 53.6
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 9.6e-100 367.9 378 55.6
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.6e-99 367.1 355 58.3
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 3.7e-99 365.9 419 52.0
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 1.8e-98 363.6 364 57.4
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 3.1e-98 362.8 388 54.9
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 6.9e-98 361.7 393 55.2
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 2.0e-97 360.1 378 55.3
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 2.0e-97 360.1 378 55.3
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 2.6e-97 359.8 372 54.8
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 3.4e-97 359.4 377 55.2
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 3.4e-97 359.4 387 54.5
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 4.5e-97 359.0 371 55.3
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 5.9e-97 358.6 371 56.1
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.3e-96 357.5 375 54.7
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.3e-96 357.5 386 54.9
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.3e-96 357.5 387 54.5
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 2.9e-96 356.3 377 54.4
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 8.5e-96 354.8 412 51.2
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 1.1e-95 354.4 357 57.1
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 4.2e-95 352.4 376 53.7
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 2.7e-94 349.7 345 59.4
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 1.3e-93 347.4 357 58.3
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 2.3e-93 346.7 360 55.8
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.3e-91 340.9 359 56.3
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 2.4e-90 336.7 396 51.8
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.4e-90 336.7 357 55.7
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 9.1e-90 334.7 381 52.5
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 2.6e-89 333.2 379 50.7
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.3e-88 330.9 347 54.8
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.5e-87 326.6 355 54.6
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 3.2e-87 326.2 347 53.6
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 5.5e-87 325.5 343 53.9
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 1.6e-86 323.9 392 49.7
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 4.6e-86 322.4 392 49.2
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.0e-85 321.2 365 51.8
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 2.0e-84 317.0 395 49.6
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 7.4e-84 315.1 420 46.4
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 6.3e-83 312.0 345 53.3
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 1.8e-82 310.5 284 62.7
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 4.1e-82 309.3 469 44.1
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 5.3e-82 308.9 387 50.6
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.0e-81 307.0 347 55.0
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 5.9e-81 305.4 347 53.3
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 3.6e-78 296.2 375 50.4
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.0e-77 293.1 373 46.9
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 3.9e-77 292.7 377 48.3
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.0e-76 290.4 322 53.1
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.0e-76 290.4 363 48.2
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 2.6e-76 290.0 378 46.6
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 4.8e-75 285.8 287 57.1
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.4e-74 283.5 387 47.5
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 9.1e-66 255.0 351 46.7
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 2.0e-65 253.8 291 54.0
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.7e-65 253.4 362 45.3
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.3e-64 251.1 305 48.9
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.2e-61 239.2 380 42.6
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 4.4e-60 236.1 269 51.3
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 3.5e-57 226.5 296 47.3
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 4.5e-57 226.1 216 56.5
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.9e-56 223.4 367 40.3
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 9.2e-50 201.8 285 47.0
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 6.8e-45 185.7 147 68.7
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 2.5e-39 167.2 155 61.3
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 4.1e-34 149.8 233 42.5
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 5.0e-32 142.9 98 75.5
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 1.5e-31 141.4 97 76.3
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 4.0e-29 133.3 162 50.6
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 2.1e-25 120.9 159 48.4
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 4.3e-23 113.2 58 96.6
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 4.7e-22 109.8 66 74.2
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 2.0e-20 104.4 57 91.2
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 1.9e-18 97.8 284 29.2
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 9.2e-18 95.5 52 86.5
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 1.0e-16 92.0 48 87.5
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 3.9e-16 90.1 52 84.6
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.9e-15 87.8 52 82.7
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 2.5e-15 87.4 160 41.2
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 3.3e-15 87.0 48 79.2
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 4.3e-15 86.7 76 52.6
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.6e-14 84.7 52 80.8
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.4e-13 81.6 59 71.2
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 4.4e-12 76.6 153 39.9
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 6.4e-11 72.8 57 54.4
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 7.1e-10 69.3 37 94.6
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.6e-09 68.2 44 75.0
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.5e-09 67.0 55 63.6
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 3.9e-08 63.5 36 86.1
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 3.6e-06 57.0 140 35.0


User provided reference genes

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