Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 2.4e-50 202.2 127 100.0
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 6.9e-42 174.1 129 85.3
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 3.4e-41 171.8 126 86.5
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 7.6e-41 170.6 129 81.4
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.6e-41 170.6 129 81.4
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.6e-41 170.6 129 81.4
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 6.4e-40 167.5 129 83.7
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 8.4e-40 167.2 129 80.6
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 3.2e-39 165.2 127 81.9
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 3.5e-38 161.8 126 81.7
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 6.0e-38 161.0 129 81.4
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 7.9e-38 160.6 129 64.3
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.0e-37 160.2 126 82.5
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 5.6e-36 154.5 128 65.6
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 9.6e-36 153.7 126 79.4
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 2.8e-35 152.1 111 89.2
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 3.7e-35 151.8 129 59.7
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.4e-34 149.8 129 79.8
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 1.8e-34 149.4 132 74.2
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 3.1e-34 148.7 129 77.5
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 5.8e-33 144.4 126 76.2
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 5.8e-33 144.4 126 77.8
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 8.4e-32 140.6 129 61.2
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 8.4e-32 140.6 129 61.2
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 1.9e-31 139.4 129 60.5
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 3.2e-31 138.7 129 61.2
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.5e-31 137.9 129 59.7
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 4.6e-30 134.8 124 73.4
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 1.1e-28 130.2 126 61.9
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 1.1e-28 130.2 118 77.1
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.5e-28 129.0 130 71.5
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.5e-28 129.0 130 71.5
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 2.5e-28 129.0 130 71.5
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 4.3e-28 128.3 120 73.3
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 5.6e-28 127.9 107 57.0
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 3.7e-27 125.2 134 67.9
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 1.1e-26 123.6 128 69.5
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 1.4e-26 123.2 129 69.8
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 1.8e-26 122.9 127 69.3
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 3.1e-26 122.1 129 69.0
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 4.0e-26 121.7 126 50.8
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 4.0e-26 121.7 129 69.0
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 5.3e-26 121.3 129 69.0
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.6e-25 119.0 129 69.0
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 2.6e-25 119.0 129 56.6
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 3.4e-25 118.6 131 51.1
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 4.5e-25 118.2 130 66.9
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 1.7e-24 116.3 126 54.0
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 2.9e-24 115.5 126 66.7
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 3.8e-24 115.2 129 49.6
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 3.8e-24 115.2 129 60.5
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 4.9e-24 114.8 129 48.8
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 1.1e-23 113.6 129 48.8
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 1.4e-23 113.2 129 66.7
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.4e-23 113.2 126 67.5
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.4e-23 113.2 126 67.5
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.5e-23 112.5 129 48.1
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 2.5e-23 112.5 129 47.3
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 3.2e-23 112.1 130 63.8
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 3.2e-23 112.1 126 64.3
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 7.1e-23 110.9 126 56.3
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 7.1e-23 110.9 129 65.9
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 7.1e-23 110.9 129 65.1
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 9.3e-23 110.5 129 48.1
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 9.3e-23 110.5 123 65.0
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 9.3e-23 110.5 126 65.9
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 1.2e-22 110.2 129 49.6
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 1.6e-22 109.8 126 63.5
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 1.6e-22 109.8 129 62.8
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 2.1e-22 109.4 129 65.9
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 3.5e-22 108.6 119 48.7
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 3.5e-22 108.6 127 47.2
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 3.5e-22 108.6 129 65.1
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 3.5e-22 108.6 120 65.0
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 3.5e-22 108.6 120 53.3
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 3.5e-22 108.6 129 65.1
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 4.6e-22 108.2 129 48.8
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 6.0e-22 107.8 129 46.5
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 6.0e-22 107.8 140 46.4
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 6.0e-22 107.8 123 48.0
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 6.0e-22 107.8 129 48.8
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 7.9e-22 107.5 129 64.3
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.3e-21 106.7 123 63.4
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 1.3e-21 106.7 129 49.6
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 1.3e-21 106.7 124 64.5
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.3e-21 106.7 126 62.7
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 1.8e-21 106.3 128 52.3
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.8e-21 106.3 129 46.5
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.3e-21 105.9 92 59.8
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 2.3e-21 105.9 129 63.6
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 3.0e-21 105.5 131 63.4
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 3.9e-21 105.1 122 45.9
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 6.7e-21 104.4 129 62.8
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 8.7e-21 104.0 129 63.6
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 1.1e-20 103.6 129 50.4
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.5e-20 103.2 123 62.6
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 3.3e-20 102.1 129 60.5
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 3.3e-20 102.1 129 45.0
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 4.3e-20 101.7 129 59.7
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 4.3e-20 101.7 129 59.7
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 4.3e-20 101.7 126 43.7
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 7.4e-20 100.9 129 59.7
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 7.4e-20 100.9 124 62.1
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 9.7e-20 100.5 131 44.3
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 9.7e-20 100.5 129 45.0
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 9.7e-20 100.5 129 45.0
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.3e-19 100.1 129 45.0
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 2.2e-19 99.4 97 55.7
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.2e-19 99.4 129 44.2
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.8e-19 99.0 126 43.7
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 4.8e-19 98.2 129 44.2
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 6.3e-19 97.8 131 45.0
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 8.2e-19 97.4 126 61.1
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 8.2e-19 97.4 124 62.9
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 5.9e-17 91.3 126 42.9
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 5.9e-17 91.3 121 57.9
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.0e-16 90.5 129 57.4
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 1.0e-16 90.5 125 57.6
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.3e-16 90.1 121 44.6
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 3.8e-16 88.6 126 38.1
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 3.8e-16 88.6 126 38.1
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 5.0e-16 88.2 124 56.5
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.0e-16 88.2 126 56.3
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 1.9e-15 86.3 124 55.6
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 4.2e-15 85.1 119 37.8
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 4.2e-15 85.1 119 37.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 4.2e-15 85.1 119 37.8
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 4.2e-15 85.1 124 54.8
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 5.5e-15 84.7 124 50.0
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 9.4e-15 84.0 120 38.3
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.2e-14 83.6 120 55.8
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 1.6e-14 83.2 113 59.3
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 1.6e-14 83.2 113 59.3
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 2.1e-14 82.8 120 55.0
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 2.1e-14 82.8 120 55.0
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 2.1e-14 82.8 120 55.0
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 2.1e-14 82.8 120 55.0
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 2.1e-14 82.8 116 37.9
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 3.6e-14 82.0 126 36.5
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.3e-13 79.3 116 36.2
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.3e-13 79.3 118 37.3
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 3.0e-13 79.0 43 79.1
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 3.9e-13 78.6 117 53.8
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 5.1e-13 78.2 107 40.2
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 8.8e-13 77.4 86 46.5
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.1e-12 77.0 107 58.9
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.9e-12 76.3 121 33.9


User provided reference genes

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