Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A371T17 Lonicera japonica HOM05D000762 ORTHO05D006179 5.4e-46 187.2 87 100.0
Nn1g09246 Nelumbo nucifera HOM05D000762 ORTHO05D006179 6.8e-25 117.1 63 82.5
Sopen08g023620 Solanum pennellii HOM05D000762 ORTHO05D006179 6.8e-25 117.1 63 85.7
Duzib068G0194 Durio zibethinus HOM05D000762 ORTHO05D006179 2.6e-24 115.2 63 82.5
Sed0017777 Sechium edule HOM05D000762 ORTHO05D006179 2.6e-24 115.2 61 82.0
Solyc08g075010.4 Solanum lycopersicum HOM05D000762 ORTHO05D006179 2.6e-24 115.2 61 86.9
HPP92_022767 Vanilla planifolia HOM05D000762 ORTHO05D006179 2.6e-24 115.2 62 82.3
Haze_08030 Corylus avellana HOM05D000762 ORTHO05D006179 5.8e-24 114.0 63 79.4
Hma1.2p1_0262F.1_g105210 Hydrangea macrophylla HOM05D000762 ORTHO05D006179 5.8e-24 114.0 63 81.0
PGSC0003DMG401015717 Solanum tuberosum HOM05D000762 ORTHO05D006179 7.5e-24 113.6 63 84.1
GSVIVG01036916001 Vitis vinifera HOM05D000762 ORTHO05D006179 7.5e-24 113.6 63 79.4
Nitab4.5_0001132g0020 Nicotiana tabacum HOM05D000762 ORTHO05D006179 1.3e-23 112.8 76 72.4
Thecc.03G322500 Theobroma cacao HOM05D000762 ORTHO05D006179 1.3e-23 112.8 63 81.0
TAR374G0039 Trochodendron aralioides HOM05D000762 ORTHO05D006179 1.3e-23 112.8 63 82.5
CsaV3_4G037910 Cucumis sativus L. HOM05D000762 ORTHO05D006179 2.2e-23 112.1 64 76.6
Dinv09425 Davidia involucrata HOM05D000762 ORTHO05D006179 2.2e-23 112.1 61 82.0
MD16G1287200 Malus domestica HOM05D000762 ORTHO05D006179 2.2e-23 112.1 61 78.7
Peaxi162Scf00157g01314 Petunia axillaris HOM05D000762 ORTHO05D006179 2.2e-23 112.1 63 82.5
MELO3C010539.2 Cucumis melo HOM05D000762 ORTHO05D006179 2.9e-23 111.7 64 76.6
PGR031G0157 Punica granatum HOM05D000762 ORTHO05D006179 2.9e-23 111.7 64 75.0
FvH4_5g24460 Fragaria vesca HOM05D000762 ORTHO05D006179 3.7e-23 111.3 63 77.8
FAN04G2135 Fragaria x ananassa HOM05D000762 ORTHO05D006179 3.7e-23 111.3 63 77.8
FAN08G1370 Fragaria x ananassa HOM05D000762 ORTHO05D006179 3.7e-23 111.3 63 77.8
FAN13G2277 Fragaria x ananassa HOM05D000762 ORTHO05D006179 3.7e-23 111.3 63 77.8
FAN13G3000 Fragaria x ananassa HOM05D000762 ORTHO05D006179 3.7e-23 111.3 63 77.8
FAN18G3726 Fragaria x ananassa HOM05D000762 ORTHO05D006179 3.7e-23 111.3 63 77.8
COL.COLO4_16726 Corchorus olitorius HOM05D000762 ORTHO05D006179 6.4e-23 110.5 63 79.4
RcHm_v2.0_Chr7g0214871 Rosa chinensis HOM05D000762 ORTHO05D006179 6.4e-23 110.5 63 76.2
Sabra03G0072900 Salix brachista HOM05D000762 ORTHO05D006179 6.4e-23 110.5 61 82.0
CANSAT11G0376 Cannabis sativa HOM05D000762 ORTHO05D006179 8.3e-23 110.2 64 73.4
CDE11G1126 Ceratophyllum demersum HOM05D000762 ORTHO05D006179 1.1e-22 109.8 69 69.6
Potri.003G106000 Populus trichocarpa HOM05D000762 ORTHO05D006179 1.1e-22 109.8 61 82.0
QL12p002432 Quercus lobata HOM05D000762 ORTHO05D006179 1.4e-22 109.4 62 79.0
Sc07g0008180 Simmondsia chinensis HOM05D000762 ORTHO05D006179 1.4e-22 109.4 61 77.0
Glyma.09G216700 Glycine max HOM05D000762 ORTHO05D006179 2.4e-22 108.6 64 73.4
TWI32G0449 Tripterygium wilfordii HOM05D000762 ORTHO05D006179 2.4e-22 108.6 63 74.6
Eucgr.D02578 Eucalyptus grandis HOM05D000762 ORTHO05D006179 3.2e-22 108.2 64 76.6
SGA_v2.0_scaffold27G11724 Striga asiatica HOM05D000762 ORTHO05D006179 3.2e-22 108.2 63 74.6
SalBow4G2613 Salvia bowleyana HOM05D000762 ORTHO05D006179 4.1e-22 107.8 63 76.2
SHI33824 Sapria himalayana HOM05D000762 ORTHO05D006179 4.1e-22 107.8 63 73.0
Prupe.5G016000 Prunus persica HOM05D000762 ORTHO05D006179 5.4e-22 107.5 63 74.6
Hund11080 Selenicereus undatus HOM05D000762 ORTHO05D006179 7.1e-22 107.1 73 64.4
MSTRG.11843 Avicennia marina HOM05D000762 ORTHO05D006179 9.2e-22 106.7 63 74.6
CSS0006761 Camellia sinensis var. sinensis HOM05D000762 ORTHO05D006179 9.2e-22 106.7 63 71.4
CSS0047392 Camellia sinensis var. sinensis HOM05D000762 ORTHO05D006179 9.2e-22 106.7 63 71.4
Cc08_g04650 Coffea canephora HOM05D000762 ORTHO05D006179 1.2e-21 106.3 62 79.0
Manes.15G190150 Manihot esculenta HOM05D000762 ORTHO05D006179 1.2e-21 106.3 64 75.0
AUR62007444 Chenopodium quinoa HOM05D000762 ORTHO05D006179 2.1e-21 105.5 61 75.4
AUR62027292 Chenopodium quinoa HOM05D000762 ORTHO05D006179 2.1e-21 105.5 61 75.4
Migut.A00494 Erythranthe guttata HOM05D000762 ORTHO05D006179 2.1e-21 105.5 63 74.6
THA.LOC104814382 Tarenaya hassleriana HOM05D000762 ORTHO05D006179 2.1e-21 105.5 63 73.0
DCAR_030950 Daucus carota HOM05D000762 ORTHO05D006179 2.7e-21 105.1 69 63.8
unitig_899.g14971 Utricularia gibba HOM05D000351 ORTHO05D006179 2.7e-21 105.1 64 73.4
ATR0568G206 Amborella trichopoda HOM05D000762 ORTHO05D006179 4.6e-21 104.4 94 57.4
Aqoxy3G01997 Aquilegia oxysepala HOM05D000762 ORTHO05D006179 6.0e-21 104.0 63 71.4
arahy.Tifrunner.gnm1.ann1.GB6XSM Arachis hypogaea HOM05D000762 ORTHO05D006179 7.8e-21 103.6 64 70.3
arahy.Tifrunner.gnm1.ann1.RB8GEU Arachis hypogaea HOM05D000762 ORTHO05D006179 7.8e-21 103.6 64 70.3
VMungo1215G2102 Vigna mungo HOM05D000762 ORTHO05D006179 7.8e-21 103.6 76 61.8
EL10Ac5g11870 Beta vulgaris HOM05D000762 ORTHO05D006179 1.0e-20 103.2 63 73.0
Duzib114G0367 Durio zibethinus HOM05D000762 ORTHO05D006179 1.0e-20 103.2 63 73.0
CiPaw.11G076700 Carya illinoinensis HOM05D000762 ORTHO05D006179 1.3e-20 102.8 61 75.4
ECA233G0984 Erigeron canadensis HOM05D000762 ORTHO05D006179 1.3e-20 102.8 64 71.9
Phvul.002G124000 Phaseolus vulgaris HOM05D000762 ORTHO05D006179 1.3e-20 102.8 76 61.8
Gohir.D12G203400 Gossypium hirsutum HOM05D000762 ORTHO05D006179 1.7e-20 102.4 63 73.0
Gorai.008G218200 Gossypium raimondii HOM05D000762 ORTHO05D006179 1.7e-20 102.4 63 73.0
Rhsim11G0040700 Rhododendron simsii HOM05D000762 ORTHO05D006179 1.7e-20 102.4 61 70.5
Gohir.A12G200600 Gossypium hirsutum HOM05D000762 ORTHO05D006179 2.3e-20 102.1 63 73.0
Os05g0389500 Oryza sativa ssp. japonica HOM05D000762 ORTHO05D006179 3.9e-20 101.3 80 58.8
PSO063G1071 Papaver somniferum HOM05D000762 ORTHO05D006179 6.6e-20 100.5 92 54.3
AL1G49550 Arabidopsis lyrata HOM05D000762 ORTHO05D006179 1.1e-19 99.8 62 72.6
Actinidia30332 Actinidia chinensis HOM05D000762 ORTHO05D006179 1.5e-19 99.4 63 65.1
Ciclev10001424m.g Citrus clementina HOM05D000762 ORTHO05D006179 1.5e-19 99.4 61 72.1
Lj2g0003478 Lotus japonicus HOM05D000762 ORTHO05D006179 1.5e-19 99.4 64 67.2
AT1G31500 Arabidopsis thaliana HOM05D000762 ORTHO05D006179 1.9e-19 99.0 62 71.0
Medtr5g026280 Medicago truncatula HOM05D000762 ORTHO05D006179 2.5e-19 98.6 65 69.2
Ca_25069_v3 Cicer arietinum L. HOM05D000762 ORTHO05D006179 4.3e-19 97.8 65 67.7
Thhalv10007841m.g Eutrema salsugineum HOM05D000762 ORTHO05D006179 4.3e-19 97.8 62 71.0
Lalb_Chr16g0380531 Lupinus albus HOM05D000762 ORTHO05D006179 4.3e-19 97.8 65 67.7
Psat2g144120 Pisum sativum HOM05D000762 ORTHO05D006179 5.6e-19 97.4 62 72.6
TPR.G30313 Trifolium pratense HOM05D000762 ORTHO05D006179 5.6e-19 97.4 65 67.7
BcaB04g18149 Brassica carinata HOM05D000762 ORTHO05D006179 7.3e-19 97.1 62 71.0
A08p10520 Brassica napus HOM05D007105 ORTHO05D006179 7.3e-19 97.1 62 71.0
Sp1g27300 Schrenkiella parvula HOM05D000762 ORTHO05D006179 7.3e-19 97.1 62 71.0
Carub.0001s2992 Capsella rubella HOM05D000762 ORTHO05D006179 9.5e-19 96.7 62 71.0
Lsat_1_v5_gn_8_24940 Lactuca sativa HOM05D000762 ORTHO05D006179 9.5e-19 96.7 64 68.8
BraA08t33051Z Brassica rapa HOM05D000762 ORTHO05D006179 1.2e-18 96.3 66 66.7
HanXRQChr07g0204501 Helianthus annuus HOM05D000762 ORTHO05D006179 1.2e-18 96.3 64 68.8
Atru.chr6.2127 Acer truncatum HOM05D000762 ORTHO05D006179 2.1e-18 95.5 76 61.8
BcaC07g37754 Brassica carinata HOM05D000762 ORTHO05D006179 2.1e-18 95.5 62 69.4
BolC8t48139H Brassica oleracea HOM05D000762 ORTHO05D006179 2.1e-18 95.5 62 69.4
A09p34690 Brassica napus HOM05D000762 ORTHO05D006179 3.6e-18 94.7 62 69.4
C05p30750 Brassica napus HOM05D000762 ORTHO05D006179 3.6e-18 94.7 62 69.4
BcaC05g27179 Brassica carinata HOM05D000762 ORTHO05D006179 6.2e-18 94.0 62 69.4
BolC5t31807H Brassica oleracea HOM05D000762 ORTHO05D006179 6.2e-18 94.0 62 69.4
TPR.G30319 Trifolium pratense HOM05D000762 ORTHO05D006179 8.1e-18 93.6 65 67.7
Aa31LG2G14450 Aethionema arabicum HOM05D000762 ORTHO05D006179 1.4e-17 92.8 62 69.4
TPR.G22336 Trifolium pratense HOM05D000030 ORTHO05D000009 1.4e-17 92.8 64 68.8
BcaB07g32811 Brassica carinata HOM05D000762 ORTHO05D006179 1.8e-17 92.4 62 67.7
Nitab4.5_0002799g0030 Nicotiana tabacum HOM05D000762 ORTHO05D006179 8.9e-17 90.1 53 79.2
SHI32998 Sapria himalayana HOM05D000762 ORTHO05D006179 2.0e-16 89.0 63 61.9
Pp3c22_8300 Physcomitrium patens HOM05D000762 ORTHO05D006179 4.4e-16 87.8 80 47.5
AagrBONN_evm.TU.Sc2ySwM_344.1125 Anthoceros agrestis HOM05D000762 ORTHO05D006179 7.6e-16 87.0 65 52.3
SMO347G0652 Selaginella moellendorffii HOM05D000762 ORTHO05D006179 7.6e-16 87.0 61 62.3
SMO167G0012 Selaginella moellendorffii HOM05D000762 ORTHO05D006179 6.4e-15 84.0 64 54.7
Mapoly0010s0066 Marchantia polymorpha HOM05D000762 ORTHO05D006179 2.1e-13 79.0 64 51.6
CBR_g57848 Chara braunii HOM05D000762 ORTHO05D006179 3.5e-13 78.2 65 50.8
MBI04_g30784_MAGBIO Magnolia biondii HOM05D000762 ORTHO05D006179 1.3e-12 76.3 41 80.5
AL1G49510 Arabidopsis lyrata HOM05D000762 ORTHO05D006179 6.6e-12 73.9 62 56.5
Atru.BG.144.p Acer truncatum HOM05D000762 ORTHO05D006179 8.7e-12 73.6 63 54.0
AT1G31530 Arabidopsis thaliana HOM05D000762 ORTHO05D006179 5.8e-08 60.8 63 46.0
ClCG11G016210 Citrullus lanatus HOM05D007105 ORTHO05D009304 7.6e-08 60.5 64 50.0
MCO05G456 Micromonas commoda HOM05D000762 ORTHO05D006179 7.6e-08 60.5 68 38.2
Pp3c1_25240 Physcomitrium patens HOM05D000762 ORTHO05D002234 2.9e-07 58.5 84 32.1
Glyma.01G151532 Glycine max HOM05D000762 ORTHO05D006179 3.8e-07 58.2 46 58.7
HanXRQChr09g0250481 Helianthus annuus HOM05D000762 ORTHO05D002234 1.1e-06 56.6 66 36.4
Lsat_1_v5_gn_4_99121 Lactuca sativa HOM05D000762 ORTHO05D002234 1.1e-06 56.6 66 34.8
Carub.0002s2064 Capsella rubella HOM05D000762 ORTHO05D002234 1.9e-06 55.8 65 33.8
HPP92_004824 Vanilla planifolia HOM05D000762 ORTHO05D002234 1.9e-06 55.8 66 34.8
DCAR_023204 Daucus carota HOM05D000762 ORTHO05D002234 3.2e-06 55.1 65 32.3
RcHm_v2.0_Chr7g0185351 Rosa chinensis HOM05D000762 ORTHO05D002234 3.2e-06 55.1 66 36.4
Aqoxy3G00350 Aquilegia oxysepala HOM05D000762 ORTHO05D002234 4.2e-06 54.7 65 35.4
Ca_25496_v3 Cicer arietinum L. HOM05D000762 ORTHO05D002234 4.2e-06 54.7 66 34.8
Cc11_g01670 Coffea canephora HOM05D000762 ORTHO05D002234 4.2e-06 54.7 65 36.9
Medtr6g084560 Medicago truncatula HOM05D000762 ORTHO05D002234 4.2e-06 54.7 66 34.8
Lj2g0022064 Lotus japonicus HOM05D000762 ORTHO05D002234 5.4e-06 54.3 65 35.4
PSO478G0892 Papaver somniferum HOM05D000762 ORTHO05D002234 7.1e-06 53.9 65 36.9
Phvul.004G157500 Phaseolus vulgaris HOM05D000762 ORTHO05D002234 7.1e-06 53.9 65 33.8
Psat6g090400 Pisum sativum HOM05D000762 ORTHO05D002448 7.1e-06 53.9 73 34.2
Manes.01G020000 Manihot esculenta HOM05D000762 ORTHO05D002234 9.3e-06 53.5 65 38.5
PSO017G1524 Papaver somniferum HOM05D000762 ORTHO05D002234 9.3e-06 53.5 65 36.9


User provided reference genes

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