Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A365T11 Lonicera japonica HOM05D000219 ORTHO05D004649 1.5e-300 1035.4 536 100.0
GSVIVG01022253001 Vitis vinifera HOM05D000219 ORTHO05D004649 6.8e-216 754.2 530 68.9
Cc07_g16490 Coffea canephora HOM05D000219 ORTHO05D004649 6.6e-211 737.6 529 68.1
Dinv19467 Davidia involucrata HOM05D000219 ORTHO05D004649 1.4e-208 729.9 467 73.9
TAR625G1522 Trochodendron aralioides HOM05D000219 ORTHO05D004649 4.4e-207 724.9 531 66.5
QL06p031679 Quercus lobata HOM05D000219 ORTHO05D004649 5.8e-207 724.5 532 66.4
CSS0031787 Camellia sinensis var. sinensis HOM05D000219 ORTHO05D004649 7.5e-207 724.2 532 66.9
TWI79G1233 Tripterygium wilfordii HOM05D000219 ORTHO05D004649 3.5e-204 715.3 532 64.8
Cfa002771 Carpinus fangiana HOM05D000219 ORTHO05D004649 1.7e-203 713.0 531 65.2
Ciclev10027573m.g Citrus clementina HOM05D000219 ORTHO05D004649 1.1e-202 710.3 530 65.7
Gorai.009G178600 Gossypium raimondii HOM05D000219 ORTHO05D004649 4.0e-200 701.8 529 65.4
Gohir.A05G170300 Gossypium hirsutum HOM05D000219 ORTHO05D004649 8.9e-200 700.7 529 65.4
MSTRG.2524 Avicennia marina HOM05D000219 ORTHO05D004649 9.8e-199 697.2 533 64.7
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 9.8e-199 697.2 529 64.8
Potri.002G233300 Populus trichocarpa HOM05D000219 ORTHO05D004649 1.3e-198 696.8 528 65.9
FvH4_2g15830 Fragaria vesca HOM05D000219 ORTHO05D004649 2.9e-198 695.7 527 64.3
Duzib235G0760 Durio zibethinus HOM05D000219 ORTHO05D004649 4.9e-198 694.9 529 64.1
Actinidia39311 Actinidia chinensis HOM05D000219 ORTHO05D004649 6.4e-198 694.5 529 65.2
FAN24G0946 Fragaria x ananassa HOM05D000219 ORTHO05D004649 8.3e-198 694.1 527 64.1
Oeu027201.4 Olea europaea HOM05D000219 ORTHO05D004649 8.3e-198 694.1 534 63.1
HanXRQChr10g0311141 Helianthus annuus HOM05D000219 ORTHO05D004649 9.2e-197 690.6 528 64.8
Rhsim10G0148200 Rhododendron simsii HOM05D000219 ORTHO05D004649 9.2e-197 690.6 537 65.2
CANSAT64G2196 Cannabis sativa HOM05D000219 ORTHO05D004649 6.0e-196 688.0 531 63.8
CiPaw.15G021800 Carya illinoinensis HOM05D000219 ORTHO05D004649 6.0e-196 688.0 531 63.1
Eucgr.H04885 Eucalyptus grandis HOM05D000219 ORTHO05D004649 1.3e-195 686.8 527 63.8
SalBow6G5746 Salvia bowleyana HOM05D000219 ORTHO05D004649 2.3e-195 686.0 532 63.3
FAN20G1304 Fragaria x ananassa HOM05D000219 ORTHO05D004649 5.1e-195 684.9 527 63.6
Oeu035604.1 Olea europaea HOM05D000219 ORTHO05D004649 6.6e-195 684.5 534 62.2
FAN15G1293 Fragaria x ananassa HOM05D000219 ORTHO05D004649 4.3e-194 681.8 527 63.8
Prupe.1G573900 Prunus persica HOM05D000219 ORTHO05D004649 7.3e-194 681.0 527 63.6
Carub.0004s1368 Capsella rubella HOM05D000219 ORTHO05D004649 2.1e-193 679.5 527 61.7
SGA_v2.0_scaffold2G01286 Striga asiatica HOM05D000219 ORTHO05D004649 3.6e-193 678.7 534 64.2
Carub.0004s1193 Capsella rubella HOM05D000219 ORTHO05D004649 6.2e-193 677.9 530 61.5
Thhalv10016524m.g Eutrema salsugineum HOM05D000219 ORTHO05D004649 2.3e-192 676.0 527 61.9
CAN.G1235.19 Capsicum annuum HOM05D000219 ORTHO05D004649 1.2e-191 673.7 530 62.8
Manes.11G020000 Manihot esculenta HOM05D000219 ORTHO05D004649 1.5e-191 673.3 468 68.4
MD05G1030700 Malus domestica HOM05D000219 ORTHO05D004649 2.0e-191 672.9 527 62.4
Hund21266 Selenicereus undatus HOM05D000219 ORTHO05D004649 7.6e-191 671.0 530 60.2
THA.LOC104800903 Tarenaya hassleriana HOM05D000219 ORTHO05D004649 7.6e-191 671.0 529 60.5
COL.COLO4_16836 Corchorus olitorius HOM05D000219 ORTHO05D004649 2.2e-190 669.5 536 62.3
Sopen04g022970 Solanum pennellii HOM05D000219 ORTHO05D004649 8.4e-190 667.5 530 61.7
A03p17780 Brassica napus HOM05D000219 ORTHO05D004649 1.4e-189 666.8 527 60.0
AL4G26840 Arabidopsis lyrata HOM05D000219 ORTHO05D004649 1.9e-189 666.4 527 60.2
Gohir.D05G173400 Gossypium hirsutum HOM05D000219 ORTHO05D004649 9.2e-189 664.1 508 64.4
BcaC02g11270 Brassica carinata HOM05D000219 ORTHO05D004649 1.2e-188 663.7 529 59.7
A05p13880 Brassica napus HOM05D000219 ORTHO05D004649 1.2e-188 663.7 529 59.9
CsaV3_6G042230 Cucumis sativus L. HOM05D000219 ORTHO05D004649 1.2e-188 663.7 528 62.1
AT2G32320 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 1.6e-188 663.3 527 60.3
Sp4g14010 Schrenkiella parvula HOM05D000219 ORTHO05D004649 1.6e-188 663.3 527 60.5
BcaB02g10403 Brassica carinata HOM05D000219 ORTHO05D004649 2.1e-188 662.9 528 59.8
C03p20860 Brassica napus HOM05D000219 ORTHO05D004649 2.1e-188 662.9 527 59.8
C04p18270 Brassica napus HOM05D000219 ORTHO05D004649 4.6e-188 661.8 533 59.5
Carub.0004s1289 Capsella rubella HOM05D000219 ORTHO05D004649 1.3e-187 660.2 527 59.6
FvH4_1g22971 Fragaria vesca HOM05D000219 ORTHO05D004649 1.3e-187 660.2 528 61.2
DCAR_027131 Daucus carota HOM05D000219 ORTHO05D004649 2.3e-187 659.4 533 60.4
Hma1.2p1_0975F.1_g243180 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 5.1e-187 658.3 529 60.3
Sed0023684 Sechium edule HOM05D000219 ORTHO05D004649 5.1e-187 658.3 528 61.4
BraA05t20324Z Brassica rapa HOM05D000219 ORTHO05D004649 5.6e-186 654.8 551 57.5
Peaxi162Scf00106g01118 Petunia axillaris HOM05D000219 ORTHO05D004649 1.6e-185 653.3 530 61.3
Sabra02G0178000 Salix brachista HOM05D000219 ORTHO05D004649 6.2e-185 651.4 618 55.8
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 1.4e-184 650.2 464 66.4
BolC3t14438H Brassica oleracea HOM05D000219 ORTHO05D004649 8.9e-184 647.5 552 57.2
BolC4t23384H Brassica oleracea HOM05D000219 ORTHO05D004649 1.2e-183 647.1 560 56.6
ClCG01G015950 Citrullus lanatus HOM05D000219 ORTHO05D004649 5.8e-183 644.8 547 59.0
BraA03t11042Z Brassica rapa HOM05D000219 ORTHO05D004649 7.6e-183 644.4 546 57.3
Nn1g05995 Nelumbo nucifera HOM05D000219 ORTHO05D004649 1.2e-180 637.1 540 59.3
MELO3C007464.2 Cucumis melo HOM05D000219 ORTHO05D004649 1.6e-180 636.7 528 60.0
unitig_899.g14613 Utricularia gibba HOM05D000219 ORTHO05D004649 1.0e-179 634.0 523 58.3
FAN23G1549 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.5e-178 629.4 478 63.8
FAN27G2048 Fragaria x ananassa HOM05D000219 ORTHO05D004649 4.3e-178 628.6 527 60.2
CARHR008820 Cardamine hirsuta HOM05D000219 ORTHO05D004649 2.8e-177 625.9 506 58.7
Thecc.06G220500 Theobroma cacao HOM05D000219 ORTHO05D004649 1.4e-176 623.6 434 69.1
Lalb_Chr11g0075091 Lupinus albus HOM05D000219 ORTHO05D004649 4.0e-176 622.1 531 57.8
TPR.G6992 Trifolium pratense HOM05D000219 ORTHO05D004649 2.0e-175 619.8 524 57.4
Lj5g0005884 Lotus japonicus HOM05D000219 ORTHO05D004649 4.5e-175 618.6 518 57.9
Lj7C160G16 Lonicera japonica HOM05D000219 ORTHO05D004649 8.4e-174 614.4 430 73.7
Ca_09426_v3 Cicer arietinum L. HOM05D000219 ORTHO05D004649 9.3e-173 610.9 522 57.1
Sc05g0007990 Simmondsia chinensis HOM05D000219 ORTHO05D004649 1.2e-172 610.5 529 58.6
Haze_25064 Corylus avellana HOM05D000219 ORTHO05D004649 2.7e-172 609.4 563 56.3
FAN26G0146 Fragaria x ananassa HOM05D000219 ORTHO05D004649 3.5e-172 609.0 467 63.0
VMungo0720G2488 Vigna mungo HOM05D000219 ORTHO05D004649 3.5e-172 609.0 519 57.6
Psat0s1144g0040 Pisum sativum HOM05D000219 ORTHO05D004649 1.8e-171 606.7 517 56.7
arahy.Tifrunner.gnm1.ann1.V7J6Z4 Arachis hypogaea HOM05D000219 ORTHO05D004649 2.3e-171 606.3 469 61.6
Atru.chr10.1102 Acer truncatum HOM05D000219 ORTHO05D004649 3.0e-171 605.9 471 63.5
arahy.Tifrunner.gnm1.ann1.M2QW19 Arachis hypogaea HOM05D000219 ORTHO05D004649 3.9e-171 605.5 469 61.4
vmacro12890 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.1e-170 604.0 626 53.2
Solyc04g051600.4 Solanum lycopersicum HOM05D000219 ORTHO05D004649 1.5e-170 603.6 471 62.4
Glyma.10G001600 Glycine max HOM05D000219 ORTHO05D004649 3.6e-169 599.0 522 56.1
Medtr7g115250 Medicago truncatula HOM05D000219 ORTHO05D004649 4.8e-169 598.6 524 55.3
Psat7g054840 Pisum sativum HOM05D000219 ORTHO05D004649 6.2e-169 598.2 520 56.0
AUR62016924 Chenopodium quinoa HOM05D000219 ORTHO05D004649 8.1e-169 597.8 531 55.9
Glyma.16G091600 Glycine max HOM05D000219 ORTHO05D004649 8.1e-169 597.8 521 56.6
Lj6g0002222 Lotus japonicus HOM05D000219 ORTHO05D004649 6.9e-168 594.7 464 60.8
Phvul.010G125700 Phaseolus vulgaris HOM05D000219 ORTHO05D004649 5.5e-165 585.1 519 56.1
Hma1.2p1_0252F.1_g102800 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 2.1e-164 583.2 455 62.0
Nitab4.5_0000184g0150 Nicotiana tabacum HOM05D000219 ORTHO05D004649 2.1e-164 583.2 534 56.9
AUR62010269 Chenopodium quinoa HOM05D000219 ORTHO05D004649 2.7e-164 582.8 531 54.8
Nitab4.5_0009050g0040 Nicotiana tabacum HOM05D000219 ORTHO05D004649 1.5e-162 577.0 534 55.8
AUR62013249 Chenopodium quinoa HOM05D000219 ORTHO05D004649 9.6e-162 574.3 531 53.9
AT2G31580 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 1.2e-159 567.4 403 65.0
RcHm_v2.0_Chr2g0117491 Rosa chinensis HOM05D000219 ORTHO05D004649 1.5e-154 550.4 451 59.9
Lsat_1_v5_gn_7_9060 Lactuca sativa HOM05D000219 ORTHO05D004649 2.1e-153 546.6 537 55.7
vmacro14893 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 5.9e-151 538.5 536 55.2
COL.COLO4_17688 Corchorus olitorius HOM05D000219 ORTHO05D004649 6.3e-145 518.5 385 64.4
PGR102G3329 Punica granatum HOM05D000219 ORTHO05D004649 1.8e-144 516.9 458 55.9
CAN.G1044.3 Capsicum annuum HOM05D000219 ORTHO05D004649 8.2e-137 491.5 402 61.4
Os05g0535500 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D004649 5.5e-133 478.8 527 47.4
PGSC0003DMG400031193 Solanum tuberosum HOM05D000219 ORTHO05D004649 5.0e-126 455.7 468 51.3
Atru.chr10.1005 Acer truncatum HOM05D000219 ORTHO05D004649 8.5e-126 454.9 403 58.1
Migut.B00934 Erythranthe guttata HOM05D000219 ORTHO05D004649 4.4e-122 442.6 369 60.7
TAR628G0592 Trochodendron aralioides HOM05D000219 ORTHO05D004649 3.8e-118 429.5 296 69.3
Haze_08455 Corylus avellana HOM05D000219 ORTHO05D004649 1.7e-110 404.1 330 60.3
EL10Ac8g20632 Beta vulgaris HOM05D000219 ORTHO05D004649 2.3e-102 377.1 534 41.9
MBI04_g33333_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 1.2e-100 371.3 273 65.6
CANSAT01G1436 Cannabis sativa HOM05D000219 ORTHO05D004649 1.4e-99 367.9 281 62.6
Atru.chr10.1697 Acer truncatum HOM05D000219 ORTHO05D004649 4.9e-97 359.4 286 61.2
PSO782G0604 Papaver somniferum HOM05D000219 ORTHO05D004649 3.2e-88 330.1 274 58.4
HPP92_021547 Vanilla planifolia HOM05D000219 ORTHO05D004649 6.0e-87 325.9 273 57.5
Aqoxy2G01146 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 1.3e-86 324.7 274 58.4
Aqoxy3G01228 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 8.6e-86 322.0 274 58.0
ATR0322G032 Amborella trichopoda HOM05D000219 ORTHO05D004649 9.9e-82 308.5 276 55.1
Glyma.16G117567 Glycine max HOM05D000219 ORTHO05D004649 1.3e-81 308.1 259 59.5
PSO063G1486 Papaver somniferum HOM05D000219 ORTHO05D004649 1.7e-81 307.8 300 52.0
MBI05_g03455_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 1.6e-79 301.2 175 79.4
PSO063G0175 Papaver somniferum HOM05D000219 ORTHO05D004649 1.7e-78 297.7 274 54.4
Zm00001eb294000 Zea mays HOM05D000219 ORTHO05D004649 8.6e-78 295.4 394 41.9
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 5.6e-77 292.7 220 63.6
RcHm_v2.0_Chr6g0279211 Rosa chinensis HOM05D000219 ORTHO05D004649 5.6e-77 292.7 246 56.5
CDE06G2407 Ceratophyllum demersum HOM05D000219 ORTHO05D004649 1.1e-75 288.5 243 58.8
AagrBONN_evm.TU.Sc2ySwM_117.2004 Anthoceros agrestis HOM05D000219 ORTHO05D004649 1.5e-74 284.6 284 51.4
Mapoly0167s0023 Marchantia polymorpha HOM05D000219 ORTHO05D004649 6.4e-73 279.3 271 51.7
Pp3c1_10760 Physcomitrium patens HOM05D000219 ORTHO05D004649 8.4e-73 278.9 274 52.9
CBR_g11164 Chara braunii HOM05D000219 ORTHO05D004649 1.0e-70 271.9 293 51.2
Cre13.g581550 Chlamydomonas reinhardtii HOM05D000219 ORTHO05D004649 6.4e-65 252.7 271 47.6
TAR628G0698 Trochodendron aralioides HOM05D000219 ORTHO05D004649 2.1e-63 247.7 226 57.5
Atru.chr10.1696 Acer truncatum HOM05D000219 ORTHO05D004649 2.4e-59 234.2 142 75.4
AUR62014746 Chenopodium quinoa HOM05D000219 ORTHO05D004649 3.1e-59 233.8 271 45.4
PRCOL_00002092 Prasinoderma coloniale HOM05D000219 ORTHO05D004649 7.6e-58 229.2 272 45.6
SMO146G0027 Selaginella moellendorffii HOM05D000219 ORTHO05D004649 9.3e-56 222.2 205 51.7
SHI31711 Sapria himalayana HOM05D000219 ORTHO05D004649 1.8e-54 218.0 159 62.3
Cfa023086 Carpinus fangiana HOM05D000219 ORTHO05D004649 1.1e-51 208.8 316 39.6
HanXRQChr10g0318971 Helianthus annuus HOM05D000219 ORTHO05D004649 4.5e-50 203.4 183 58.5
vmacro14894 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.1e-48 198.7 300 42.7
HPP92_021534 Vanilla planifolia HOM05D000219 ORTHO05D004649 8.7e-46 189.1 186 48.9
Glyma.16G117633 Glycine max HOM05D000219 ORTHO05D004649 2.5e-45 187.6 184 51.1
PGSC0003DMG402004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 2.5e-45 187.6 148 56.8
HPP92_021538 Vanilla planifolia HOM05D000219 ORTHO05D004649 8.2e-44 182.6 212 46.2
Sopen04g022950 Solanum pennellii HOM05D000219 ORTHO05D000001 3.9e-38 163.7 165 52.1
SHI31709 Sapria himalayana HOM05D000219 ORTHO05D004649 3.7e-36 157.1 112 65.2
CARHR125230 Cardamine hirsuta HOM05D000219 ORTHO05D004649 6.3e-36 156.4 110 62.7
Haze_26924 Corylus avellana HOM05D000219 ORTHO05D004649 5.3e-35 153.3 161 44.7
AagrBONN_evm.TU.Sc2ySwM_344.3315 Anthoceros agrestis HOM05D000219 ORTHO05D004649 3.4e-34 150.6 127 58.3
Cpa.g.c44268 Carica papaya HOM05D000219 ORTHO05D004649 2.5e-29 134.4 70 84.3
GSVIVG01006301001 Vitis vinifera HOM05D000026 ORTHO05D000127 2.5e-29 134.4 88 70.5
HanXRQChr10g0318981 Helianthus annuus HOM05D000219 ORTHO05D004649 2.8e-28 131.0 120 57.5
vmacro20266 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 8.2e-28 129.4 244 38.1
CAN.G555.5 Capsicum annuum HOM05D000219 ORTHO05D000137 1.2e-26 125.6 71 76.1
vmacro13881 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 3.4e-26 124.0 104 56.7
Lj7A96G45 Lonicera japonica HOM05D000219 ORTHO05D004649 4.5e-26 123.6 93 65.6
Lj7A96T47 Lonicera japonica HOM05D000219 ORTHO05D004649 5.5e-24 116.7 60 90.0
RcHm_v2.0_Chr2g0117501 Rosa chinensis HOM05D000219 ORTHO05D004649 5.5e-24 116.7 89 62.9
HanXRQChr10g0319001 Helianthus annuus HOM05D000219 ORTHO05D004649 9.7e-21 105.9 89 58.4
PGSC0003DMG400016550 Solanum tuberosum HOM05D000219 ORTHO05D004649 2.0e-18 98.2 90 55.6
HanXRQChr10g0318991 Helianthus annuus HOM05D000219 ORTHO05D021059 5.9e-18 96.7 83 56.6
Actinidia05378 Actinidia chinensis HOM05D000219 ORTHO05D004649 5.2e-14 83.6 59 64.4
PGSC0003DMG400020961 Solanum tuberosum HOM05D000219 ORTHO05D004649 6.7e-14 83.2 45 80.0
Atru.chr10.1695 Acer truncatum HOM05D000219 ORTHO05D021059 3.3e-13 80.9 100 46.0
CARHR125240 Cardamine hirsuta HOM05D000219 ORTHO05D004649 4.4e-13 80.5 106 43.4
Atru.chr10.1103 Acer truncatum HOM05D000219 ORTHO05D004649 1.3e-12 79.0 57 64.9
AL4G27720 Arabidopsis lyrata HOM05D000219 ORTHO05D021059 4.8e-12 77.0 113 41.6
A07p24800 Brassica napus HOM05D000219 ORTHO05D017689 1.8e-11 75.1 75 48.0
BraA03t15335Z Brassica rapa HOM05D000219 ORTHO05D017689 1.8e-11 75.1 75 48.0
A02p19800 Brassica napus HOM05D000219 ORTHO05D017689 2.4e-11 74.7 75 48.0
C09p21500 Brassica napus HOM05D000352 ORTHO05D000260 9.1e-11 72.8 45 75.6
C03p38700 Brassica napus HOM05D012973 ORTHO05D016770 2.0e-10 71.6 40 77.5
BcaC05g27999 Brassica carinata HOM05D012973 ORTHO05D016770 3.5e-10 70.9 44 70.5
C05p40080 Brassica napus HOM05D012973 ORTHO05D016770 3.5e-10 70.9 44 70.5
BolC5t32753H Brassica oleracea HOM05D012973 ORTHO05D016770 3.5e-10 70.9 44 70.5
Nitab4.5_0005102g0050 Nicotiana tabacum HOM05D000219 ORTHO05D004649 4.5e-10 70.5 42 73.8
PGSC0003DMG400020960 Solanum tuberosum HOM05D000219 ORTHO05D004649 4.5e-10 70.5 43 72.1
C09p23930 Brassica napus HOM05D000219 ORTHO05D017689 5.9e-10 70.1 75 45.3
BolC3t16144H Brassica oleracea HOM05D012973 ORTHO05D016770 1.0e-09 69.3 38 78.9
Lj7A96T46 Lonicera japonica HOM05D000219 ORTHO05D004649 1.6e-07 62.0 42 66.7
PGSC0003DMG401004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 2.1e-07 61.6 64 50.0
SHI31712 Sapria himalayana HOM05D000219 ORTHO05D366583 1.0e-06 59.3 37 67.6


User provided reference genes

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